BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44280.1
Length=1959
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935358 jgi|Araly1|935358|scaffold_403346.1 2327 0.0
Ahg486472 jgi|Araly1|486472|fgenesh2_kg.5__2464__AT3G60070.1 1242 0.0
Ahg903265 jgi|Araly1|903265|Al_scaffold_0003_393 444 1e-123
> Ahg935358 jgi|Araly1|935358|scaffold_403346.1
Length=1433
Score = 2327 bits (1260), Expect = 0.0
Identities = 1379/1437 (96%), Gaps = 5/1437 (0%)
Strand=Plus/Plus
Query 335 TCTCTTTTGAAAACGATTAGTTGATGACGTCATCGGTTATTGTCGGAATGgaagaagaag 394
||||||||| |||| ||| |||||||||||||||||||| ||||||||| | |||||||
Sbjct 1 TCTCTTTTGCAAACAATTGGTTGATGACGTCATCGGTTACTGTCGGAAT-G--GAAGAAG 57
Query 395 aagaagaTCCATCGACAAAACCACTTGGAAGATTGTCTGTGTTCTATTATGGAGTTGGAC 454
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 58 AAGAAGATCCATCGACAAAACCACTTGGAAGATTGTCGGTGTTCTATTATGGAGTTGGAC 117
Query 455 ATATGCTTAATGACATTACTGCTTCTTGTTGGTTCACTTACCTTCTCTTGTTTTTAACCC 514
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 118 ATATGCTTAATGACATTACTGCTTCTTGTTGGTTTACTTACCTCCTCTTGTTTTTAACCC 177
Query 515 AAATTGGCCTCTCCCCAAGGGATGCTGCAATTGTCATGCTCTCTGGTCAAGTTGCTGATG 574
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 AAATTGGTCTCTCCCCAAGGGATGCTGCAATTGTCATGCTCTCTGGTCAAGTTGCTGATG 237
Query 575 GTTTTGCTACAATCTTCATCGGTGAATTGATTGATAGATTTGGGCATTTCAAAATTTGGC 634
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 238 GTTTTGCTACTATCTTCATTGGTGAATTGATTGATAGATTTGGGCATTTCAAAATTTGGC 297
Query 635 ATGCTGCAGGATCCT-TATTAGTTGCTATCTCATTTTCCTCTGTTTTTGGCGGTTGTTTG 693
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 ATGCTGCAGGAT-CTCTATTAGTTGCTATCTCATTTTCCTCTGTTTTTGGCGGTTGTTTG 356
Query 694 CCTTGTTCACTCCTCCATAATAACTCTTCAACTATCGAAACATTATCGTACAGTATGTTT 753
||||||||||||||||||| |||||| ||||||||||||||||||||||| | ||||||
Sbjct 357 CCTTGTTCACTCCTCCATAGTAACTCCTCAACTATCGAAACATTATCGTATTGCATGTTT 416
Query 754 GCAGCTATCTTCAATATTGGATGGGCTGCTACTCAGGTTTCTCACATGGCTATGGTTAAT 813
||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 417 GCAGCTATCTTCAATGTAGGATGGGCTGCTACTCAGGTTTCTCACATGGCTATAGTTAAT 476
Query 814 TGCATTACATTGAATTCAACAAGCAGAGTAGCACTAACAAGCTCCCGTAATGCGTTTAGC 873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TGCATTACATTGAATTCAACAAGCAGAGTAGCACTAACAAGCTCCCGTAATGCGTTTAGC 536
Query 874 ATGGTTGCTAATTTAGGCTTATACGCTATTGCTTTAGTTGTATTTGGTGTTAGCGAGGCC 933
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 537 ATGGTTGCTAACTTAGGCTTATACGCGATTGCTTTAGTTGTATTTGGTGTTAGCGAGGCC 596
Query 934 GTGACAAAAGAAAATACCGAATCTCAGTATCGTTGGATTGCTTATTCATCCATCACCGTT 993
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 597 GTGACAAAAGAAAATACCGAAACTCAGTATCGTTGGATTGCTTATTCATCCATCACCGTT 656
Query 994 GGCTGCTGCTTTGTGGTCATATTTCTTATGGGGACAAAGGAACCAAGGCTGAGGATAAAT 1053
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 657 GGCTGCTGCTTTGTGGTCATATTTCTTATGGGGACAAAGGAACCAAGGATGAAGATAAAT 716
Query 1054 CTAAGAGAAACTAGTCGAGCAAGAATACCATGGTCTTATTGGTTCCGTAAAATTCTATAC 1113
||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 717 TTAAGAGAGACTAGCCGATCAAGAATACCATGGTCTTATTGGTTCCGTAAAATTCTATAC 776
Query 1114 TATCAAGTTGCTATGGTTTATCTCCTCACTCGACTAGTATTGAATGTTTCACAGGCATAT 1173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TATCAAGTTGCTATGGTTTATCTCCTCACTCGACTAGTATTGAATGTTTCACAGGCATAT 836
Query 1174 CTTGCATTCTTTGTTATTGATGATTTGCAAATGGCTCAATCTGCTAAAGCTCTGATTCCT 1233
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 CTTGCATTCTTTATTATTGATGATTTGCAAATGGCTCAATCTGCTAAAGCTCTGATTCCC 896
Query 1234 GCAATAATCTACGTATGCAGCTTCGTTGTATCAGTTATGCTTCAGGAGATTCCTTGGAAT 1293
|||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 897 GCAATAATCTACATCTGCAGCTTCGTTGTATCGGTTATGCTTCAGGAGATTCCTTGGAAT 956
Query 1294 GGAAAACGCCTCAAGGCATATTATTGTGCTGGTGGTATTATTTGGATATTCTGCGGTATA 1353
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 957 GGAAAACGCCTCAAGGCATATTATTGTGCGGGTGGTATTATTTGGATATTCTGCGGTATA 1016
Query 1354 TCAATACTCTTATTGCCCAGAAGCATTAACTCTTACATGTATGCGATCTCTGTCTTTATC 1413
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1017 TCAATCCTCTTATTGCCCAGAAGCATTAACTCGTACATGTATGCGATCTCTGTCTTTATC 1076
Query 1414 GGCATCGCAAATGCAGTAATGTTGGTGACATCAATTAGTATGCAGAGTGTCTTGATTGGT 1473
||||||||||||||| ||||| |||||||| ||||||||||||||||||| |||||||||
Sbjct 1077 GGCATCGCAAATGCATTAATGCTGGTGACAGCAATTAGTATGCAGAGTGTGTTGATTGGT 1136
Query 1474 TCGAAACTCGGGGGATGTGCTTTCGTTTGTGGGTCATTAAGCTTCTTAGACAAAATGTCA 1533
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 TCGGAACTCGGTGGATGTGCTTTCGTTTGTGGGTCATTAAGCTTCTTAGACAAAATGTCA 1196
Query 1534 TGTGGGCTTGCTTTATATGTTCTTCAGTCACATCAAGGCACTTCACCAAAGGTTGACGTA 1593
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1197 TGTGGGCTTGCCTTATATGTTCTTCAGTCACATCAAGGCACTTCACCAAAGGTTGATGTA 1256
Query 1594 AACATCAAAGAATATTTTTACTTCTCGGTGACAAGATATGGGTTAGGACTTGTTCCAGCT 1653
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1257 AACATCAAAGAATATTTTTACTTCTCGGTAACAAGATATGGGTTAGGACTTGTTCCAGCT 1316
Query 1654 GTATGCTCGCTTGTTGGAGTTGTTGTAACATATTTTATGGAACTCGATAGCACGATTCTA 1713
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1317 GTTTGCTCGCTTGTTGGAGTTGTTGTAACATATTTTATGGAACTCGATAGCACAATTCTA 1376
Query 1714 AAGCCTCTGTGTCAACCGCTACTACTAGAATGAACAGAAAGAAGAAACACAATGCTT 1770
||||||||||| ||||| |||||||||||||||| |||| ||||| || ||| ||||
Sbjct 1377 AAGCCTCTGTGCCAACCACTACTACTAGAATGAAAAGAAGGAAGATACGCAACGCTT 1433
> Ahg486472 jgi|Araly1|486472|fgenesh2_kg.5__2464__AT3G60070.1
Length=1690
Score = 1242 bits (672), Expect = 0.0
Identities = 1134/1351 (84%), Gaps = 56/1351 (4%)
Strand=Plus/Plus
Query 384 GgaagaagaagaagaagaTCCA-TCGACAAAA-CCACTTGGAAGATTGTCTGTGTTCTAT 441
||| |||| || || |||||| || |||||| ||| ||||||||| |||||| |||| |
Sbjct 177 GGAGGAAG-TGAGGAGGATCCATTC-ACAAAACCCA-TTGGAAGATGGTCTGTCTTCT-T 232
Query 442 -TATGGAGTTGGACATATGCTTAATGACATTACTGCTTCTTGTTGGTTCACTTACCTTCT 500
||||||||||| || ||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 233 CTATGGAGTTGGGCACATGCTTAATGACATTACTGCTTCATGTTGGTTCACTTACCTCCT 292
Query 501 CTTGTTTTTAACCCAAATTGGCCTCTCCCCAAGGGATGCTGCAATTGTCATGCTCTCTGG 560
| | || || ||||||||||| ||||||||||| ||||| |||||||| ||||| || ||
Sbjct 293 CCTATTCTTGACCCAAATTGGTCTCTCCCCAAGAGATGCAGCAATTGTTATGCTATCAGG 352
Query 561 TCAAGTTGCTGATG-GTTTTGCTACAATCTTCATC-GGTGAATTGATTGATAGATTTGGG 618
||||||||||||| | |||||||| ||||||| | ||||||||||| ||||| |||||
Sbjct 353 CCAAGTTGCTGATGCG-TTTGCTACTATCTTCA-CTGGTGAATTGATAGATAGGTTTGGA 410
Query 619 CATTTCAAAATTTGGCATGCTGCAGGATCCTTATTAGTTGCTATCTCATTTTCCTCTGTT 678
|||||||| |||||||||||||||||||| ||| | ||||| ||||| |||||||| |||
Sbjct 411 CATTTCAAGATTTGGCATGCTGCAGGATCATTACTGGTTGCAATCTCGTTTTCCTCGGTT 470
Query 679 TTTGGCGGTTGTTTGCCTTGTTC-ACTCCTCCATAATAACTCT-TCAACTA-TCGAAACA 735
|| || |||||| |||||||||| | |||||||||| ||||| | ||| | |||||||
Sbjct 471 TTCGGAGGTTGTCTGCCTTGTTCGA-TCCTCCATAACGACTCTAT-AAC-ACTCGAAACC 527
Query 736 TTATCGTACAGTATGTTTGCAGCTATCTTCAATATTGGATGGGCTGCTACTCAGGTTTCT 795
|| || |||||||||||||||||||| || || |||||||||||||||||||| |||||
Sbjct 528 TTCTCCTACAGTATGTTTGCAGCTATATTTAACATTGGATGGGCTGCTACTCAAGTTTCC 587
Query 796 CACATGGCTATGGTTAATTGCATTACATTGAATTCAACAAGCAGAGTAGCACTAACAAGC 855
|| ||||| ||||||||||||||| |||| || |||||||||||||| || |||| |||
Sbjct 588 CATATGGCCATGGTTAATTGCATTTCATTAAACTCAACAAGCAGAGTTGCTTTAACTAGC 647
Query 856 TCCCGTAATGCGTTTAGC-ATGGTTGCTAAT-TTAGGCTTATACGCTATTGCTTTAGTTG 913
|| ||||| ||||||| | |||||||||||| || |||||||| || ||||||||||| |
Sbjct 648 TCTCGTAACGCGTTTA-CTATGGTTGCTAATCTT-GGCTTATATGCGATTGCTTTAGTAG 705
Query 914 TATTTGGTGTTAGCGAGGC-CGTGACAAAAGAAAATACCGAATCTCAGTATCGTTGGATT 972
|||| ||||||| | || || |||||||| |||| ||| | |||||||||||||||
Sbjct 706 TATTCGGTGTTATTAAAGCTGGT-TCAAAAGAAGATACGGAAACACAGTATCGTTGGATT 764
Query 973 GCTTATTCATCCATCACCG-TTGGCTGCTGCTTTGTGGTCATATTTCTTATGGGGACAAA 1031
|| |||||||| |||| || |||| |||||||||||||||||||||||||||||||||||
Sbjct 765 GCATATTCATCTATCA-CGATTGGATGCTGCTTTGTGGTCATATTTCTTATGGGGACAAA 823
Query 1032 GGAACCAAGGCTGAGGATA-AATCT-AAGAGAAACTAGTCGAGCAAGAATACCATGG-TC 1088
|| ||||||||||||||| ||| | || | ||||||| |||||||||||||| ||| ||
Sbjct 824 AGAGCCAAGGCTGAGGATAGAAT-TGAA-ACAAACTAGCCGAGCAAGAATACCGTGGGTC 881
Query 1089 TTATTGGTTCCGTAAAATTCTATACTATCAAGTTGCTATGGTTTATCTCCTCACTCGACT 1148
| |||||||||| ||| ||||||||||||||||||| |||||||| |||||||||||| |
Sbjct 882 T-ATTGGTTCCGGAAACTTCTATACTATCAAGTTGCCATGGTTTACCTCCTCACTCGATT 940
Query 1149 AGTATTGAATGTTTCACAGGCATATCTTGCATTCTTTGTTATTGATGATTTGCAAATGGC 1208
||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 941 AGTATTGAATGTTTCTCAGGCATATCTTGCATTCTTCGTTATCGATGATTTGCAAATGGG 1000
Query 1209 TCAATCTGCTAAAGCTCTGATTCCTGCAATAATCTACGTATGCAGCTTCGTTGTATCAGT 1268
|||||| ||||||||| || ||||||| || ||||| | |||||||| |||||||| ||
Sbjct 1001 TCAATCCGCTAAAGCTTTGGTTCCTGCGATTATCTATATCTGCAGCTTTGTTGTATCGGT 1060
Query 1269 TATGCTTCAGGAGATTCCTTGGAATGGAAAACGCCTCAAGGCATATTATTGTGCTGGTGG 1328
| |||||||||||||||| ||||| || | |||| | ||||| |||||| ||||||||
Sbjct 1061 TCTGCTTCAGGAGATTCCATGGAACGGGAGACGCTTGAAGGCGTATTATACAGCTGGTGG 1120
Query 1329 TATTATTTGGATATTCTGCGGTATATCAATACT-CTTATTGCCCAGA-AGCATTAACT-C 1385
||| |||||||||||||| ||| | |||| || || |||||| ||| | ||| || | |
Sbjct 1121 TATAATTTGGATATTCTGTGGTGCAGCAATTCTTCT-ATTGCCTAGAGA-CAT-AAGTTC 1177
Query 1386 TTACATGTATGCGATCTCTGTCTTTATCGGCATCGCAAATGCAGTAATGTTGGTGACATC 1445
|| |||||||||||| ||||||||||| ||||||||||||||| ||||| |||| ||| |
Sbjct 1178 TTTCATGTATGCGATATCTGTCTTTATTGGCATCGCAAATGCATTAATGATGGTTACAGC 1237
Query 1446 AATTAGTATGCAGAGTGTCTTGATTGGTTCGAAACTCGGGGGATGTGC-TTTCGTTTGTG 1504
||| |||||||||||||| ||| ||||| || || |||| || || || ||| || ||||
Sbjct 1238 AATCAGTATGCAGAGTGTGTTGGTTGGTGCGGAAGTCGGTGGTTGCGCGTTT-GTCTGTG 1296
Query 1505 GGTCATTAAGCTTCTTAGACAAAATGTCATGTGGGCTTGCTTTATATGTTCTTCAGTCAC 1564
| || ||||| ||||| ||||| ||||| |||||||||||| ||||||||||||||||||
Sbjct 1297 GCTCGTTAAGTTTCTTGGACAAGATGTCTTGTGGGCTTGCTCTATATGTTCTTCAGTCAC 1356
Query 1565 ATCAAGGC-ACTTCACCAA-AGGTTGACGTAAACATCAA-AG--AATAT--T-TTTAC-T 1615
| ||| | |||||||| | ||| || |||||| ||| | || | | ||||| |
Sbjct 1357 ACCAAA-CTACTTCACCTAGAGGCCAAC-TAAACAACAACAACCAACAAAGTGTTTACCT 1414
Query 1616 TCTCGGTGACAAGATATGGGTTAGGACTTGTTCCAGC-TGTATGCTCGCTTGTTGGAGTT 1674
| ||||| |||||||| || ||||| ||||||||||| | | |||||| ||||||| ||
Sbjct 1415 T-TCGGTTACAAGATACGGTTTAGGTCTTGTTCCAGCAT-TGTGCTCGTTTGTTGGTGTC 1472
Query 1675 GTTGTAACATAT-TTTATGGAACTCGATAGC 1704
| |||||| | | |||||||| ||||| |||
Sbjct 1473 GCTGTAACGT-TCTTTATGGAGCTCGA-AGC 1501
> Ahg903265 jgi|Araly1|903265|Al_scaffold_0003_393
Length=294
Score = 444 bits (240), Expect = 1e-123
Identities = 278/296 (94%), Gaps = 3/296 (1%)
Strand=Plus/Plus
Query 1452 TATGCAGAGTGTCTTGATTGGTTCGAAACTCGGGGGATGTGCTTTCGTTTGTGGGTCATT 1511
|||||||||||| |||||||||||| |||| || ||||||||||||||||||||| ||||
Sbjct 1 TATGCAGAGTGTGTTGATTGGTTCGGAACT-GGTGGATGTGCTTTCGTTTGTGGGCCATT 59
Query 1512 AAGCTTCTTAGACAAAATGTCATGTGGGCTTGCTTTATATGTTCTTCAGTCACATCAAGG 1571
|||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||| |
Sbjct 60 AAGCTTCTTAGACAAAATGTTATGTGTGCTTGCTTTATATGTTCTTCAGTTACATCAAAG 119
Query 1572 CACTTCACCAAAGGTTGACGTAAACATCAAA-GAATATTTTTACTTCTCGGTGACAAGAT 1630
||||||||||||||| || |||||||||||| | ||||||||||||||||||||||||||
Sbjct 120 CACTTCACCAAAGGTCGATGTAAACATCAAACG-ATATTTTTACTTCTCGGTGACAAGAT 178
Query 1631 ATGGGTTAGGACTTGTTCCAGCTGTATGCTCGCTTGTTGGAGTTGTTGTAACATATTTTA 1690
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 179 ATGGGTTAGGACTTGTTCCAGCTCTATGCTCGCTTGTTGGAGTTGTTGTAACATATTTTA 238
Query 1691 TGGAACTCGATAGCACGATTCTAAAGCCTCTGTGTCAACCGCTACTACTAGAATGA 1746
|||||||| ||||||| |||||||||| |||||||||| |||||||||||||||||
Sbjct 239 TGGAACTCAATAGCACAATTCTAAAGCTTCTGTGTCAATCGCTACTACTAGAATGA 294
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73628443585
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5