BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44290.1
Length=884
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935359 jgi|Araly1|935359|scaffold_403347.1 920 0.0
Ahg483556 jgi|Araly1|483556|fgenesh2_kg.4__2616__AT2G44300.1 828 0.0
> Ahg935359 jgi|Araly1|935359|scaffold_403347.1
Length=658
Score = 920 bits (498), Expect = 0.0
Identities = 604/654 (92%), Gaps = 11/654 (2%)
Strand=Plus/Plus
Query 30 CTTAAATCAGAACAAACAAAAT-GGAGTCACGGAAGATTAAAGTAATGGCGACAGCAATA 88
|||||||||||||||||||||| ||| ||| ||| |||||| |||||||||||||||||
Sbjct 1 CTTAAATCAGAACAAACAAAATGGGA-TCATGGAGGATTAATCTAATGGCGACAGCAATA 59
Query 89 GCTTTAATAA---TGGTGGCTATGGTGGTGGATGCCGCCGGAGCTGATAAAGGGAAAGAC 145
||||| |||| |||||||||||||||||||| ||||||| |||||| |||||||||
Sbjct 60 GCTTTGATAATGGTGGTGGCTATGGTGGTGGAT---GCCGGAGATGATAAGGGGAAAGAC 116
Query 146 AAGGAAGAGTGTACGGCGCAGCTGGTCGGTATGGCCACATGTCTTCCTTACGTGCAAGGA 205
||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 117 AAGGAAGGGTGTACGGAGCAGCTGGTGGGTATGGCCACATGTCTTCCTTACGTGCAAGGA 176
Query 206 AAGGCAAAATCTCCGACGCCAGACTGTTGCTCCGGCCTCAAACAAGTTATTAATTCCGAC 265
||||||||||||||||||||||||||||||||||||||||||| ||| | |||||| ||
Sbjct 177 CAGGCAAAATCTCCGACGCCAGACTGTTGCTCCGGCCTCAAACAGGTTCTCAATTCCAAC 236
Query 266 ATGAAGTGTCTTTGTATGATCATCCAAGAGAGGAATGATCCTGATTTGGGTCTCCAGGTC 325
||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 237 ATGAAGTGTCTTTGTGTGATCATCCAAGACAGGAATGATCCTGATTTAGGTCTCCAGGTC 296
Query 326 AACGTCTCTCTCGCTCTCGCTCTTCCTTCTGTTTGCCACGCCACTGCTGACATCACTAAG 385
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 297 AACGTCTCTCTCGCTCTCGGTCTTCCTTCTGTTTGCCACGCCACTGCTGACATCACTAAG 356
Query 386 TGCCCTGCTTTGCTTCATTTGGACCCAAATTCTCCGGATGCCCAAGTGTTCTATCAGCTA 445
|| |||||||||||||| |||||||| || |||||||| ||||| |||||||||||||||
Sbjct 357 TGTCCTGCTTTGCTTCACTTGGACCCGAAGTCTCCGGAGGCCCACGTGTTCTATCAGCTA 416
Query 446 GCTAAAGGTCTGAACGAAACAGTCTCAGCCTCTGCTCCCACTGGCTCGGCCT-CTGAGCC 504
|||||||||| ||||||||| | | ||||||||||||||||||||||| || |||||||
Sbjct 417 GCTAAAGGTCAGAACGAAACGGGCAAAGCCTCTGCTCCCACTGGCTCGG-CTCCTGAGCC 475
Query 505 CACTAGTATGTCTTCGACCCCAGGATCCAGTGCTGGTAACAACAGTGGTCGGACGACCTC 564
||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 476 CACCAGCATGTCTTCGACCCCAGGATCCGGTGCTGGTAACAACAGTGGTCGGACGACCTC 535
Query 565 TGTGCCAGGCACGAACCACGCTCAAAGCTTCTCCAAACAATGGCTAGGGCTCGAAGTTGT 624
|| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 536 TGCGCCAGGCAGGAACCACGCTCAAAGCTTCTCTAAACAATGGCTAGGGCTCGAAGTTGT 595
Query 625 TGCCCATTTCTTCGTAATTTTTTATATTTTCATCCTCGTTTAGATAAGTGAAAA 678
||||||||||||||||||||||| ||||||||||||| ||||||||| | ||||
Sbjct 596 TGCCCATTTCTTCGTAATTTTTTGTATTTTCATCCTCATTTAGATAA-TAAAAA 648
> Ahg483556 jgi|Araly1|483556|fgenesh2_kg.4__2616__AT2G44300.1
Length=753
Score = 828 bits (448), Expect = 0.0
Identities = 583/646 (90%), Gaps = 17/646 (3%)
Strand=Plus/Plus
Query 33 AAATCAGAACAAACAAAAT-GGAGTCACGGAAGATTAAAGTAATGGCGACAGCAATAGCT 91
|||||| || ||||||||| ||| ||| ||| |||||| ||||||||||||||||||||
Sbjct 10 AAATCACAA-AAACAAAATGGGA-TCATGGAGGATTAATCTAATGGCGACAGCAATAGCT 67
Query 92 TTAAT-A--ATGGTGGCTATGGTGGTGGATGCCGCCGGAGCTGATAAAGG-GAAAGACAA 147
||||| | |||||||||||||||||||| ||||||| |||| |||| |||||||||
Sbjct 68 TTAATCATGGTGGTGGCTATGGTGGTGGAT---GCCGGAGATGAT-AAGGCGAAAGACAA 123
Query 148 GGAAGAGTGTACGGCGCAGCTGGTCGGTATGGCCACATGTCTTCCTTACGTGCAAGGAAA 207
||| |||||||||| ||||||||| ||||||||||| ||||||||||||||||||||| |
Sbjct 124 GGAGGAGTGTACGGAGCAGCTGGTTGGTATGGCCACGTGTCTTCCTTACGTGCAAGGACA 183
Query 208 GGCAAAATCTCCGACGCCAGACTGTTGCTCCGGCCTCAAACAAGTTATTAATTCCGACAT 267
|||||||||||| ||||| ||||||||||||||||||||||||||| |||||||| |||
Sbjct 184 GGCAAAATCTCCAACGCCGGACTGTTGCTCCGGCCTCAAACAAGTTCTTAATTCCAACAA 243
Query 268 GAAGTGTCTTTGTATGATCATCCAAGAGAGGAATGATCCTGATTTGGGTCTCCAGGTCAA 327
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 244 GAAGTGTCTTTGTGTGATCATCCAAGATAGGAATGATCCTGATTTGGGTCTCCAGATCAA 303
Query 328 CGTCTCTCTCGCTCTCGCTCTTCCTTCTGTTTGCCACGCCACTGCTGACATCACTAAGTG 387
||||||||| ||||| ||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 304 CGTCTCTCTAGCTCTTGCTCTTCCTTCTGTTTGTCACGCCACTGCCGACATCACTAAGTG 363
Query 388 CCCTGCTTTGCTTCATTTGGACCCAAATTCTCCGGATGCCCAAGTGTTCTATCAGCTAGC 447
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 364 TCCTGCTTTGCTTCACTTGGACCCAAATTCTCCGGATGCCCAAGTCTTCTATCAGCTAGC 423
Query 448 TAAAGG-TCTGAACGAAA-CAGTCTCAGCCTCTGCTCCCACTGGCTCGGCCTCTGAGCCC 505
|||||| || ||| ||| ||| | ||||||||||||||||||||| |||||||| ||||
Sbjct 424 TAAAGGTTC-AAACAAAACCAG-CCCAGCCTCTGCTCCCACTGGCTTGGCCTCTGGGCCC 481
Query 506 ACTAGTATGTCTTCGACCCCAGGATCCAG-TGCTGGTAACAACAGTGGTCGGACGACCTC 564
|| || |||||| ||||| |||||||| | || |||||||||||||||||| || |||||
Sbjct 482 ACCAGCATGTCTCCGACCGCAGGATCC-GATGATGGTAACAACAGTGGTCGAACAACCTC 540
Query 565 TGTGCCAGGCACGAACCACGCTCAAAGCTTCTCCAAACAATGGCTAGGGCTCGAAGTTGT 624
|||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 541 CGTGCCAGGCAGGAACAACGCTCAAAGCTTCTATAAACAATGGCTAGGGCTCGAAGTTGT 600
Query 625 TGCCCATTTCTTCGTAATTTTTTATATTTTCATCCTCGTTTAGATA 670
|| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 601 TGTCCATTTCTTCGTAATTTTTTATATTTTCATCCTCGTATAGATA 646
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32747585703
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5