BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44300.1
Length=837
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483556 jgi|Araly1|483556|fgenesh2_kg.4__2616__AT2G44300.1 996 0.0
Ahg935359 jgi|Araly1|935359|scaffold_403347.1 750 0.0
> Ahg483556 jgi|Araly1|483556|fgenesh2_kg.4__2616__AT2G44300.1
Length=753
Score = 996 bits (539), Expect = 0.0
Identities = 675/740 (91%), Gaps = 12/740 (2%)
Strand=Plus/Plus
Query 56 AAAACAAAAT-GGAGTCACGGAAGATTAACCTAATGGCGACAGCAATAGCTTTAAT-A-- 111
|||||||||| ||| ||| ||| |||||| |||||||||||||||||||||||||| |
Sbjct 18 AAAACAAAATGGGA-TCATGGAGGATTAATCTAATGGCGACAGCAATAGCTTTAATCATG 76
Query 112 GTGGTGGCTATGGTGGTGGCA-GCTGCTGATGATAAGACGAAAGACAAGGAGGAGTGTAC 170
||||||||||||||||||| | || | ||||||||| ||||||||||||||||||||||
Sbjct 77 GTGGTGGCTATGGTGGTGG-ATGCCGGAGATGATAAGGCGAAAGACAAGGAGGAGTGTAC 135
Query 171 GGAGCAGCTGGTCGGTATGGCCACGTGTCTTCCTTACGTGCAAGGACAAGCAAAATCTCC 230
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 136 GGAGCAGCTGGTTGGTATGGCCACGTGTCTTCCTTACGTGCAAGGACAGGCAAAATCTCC 195
Query 231 GACGCCAGACTGTTGCTCCGGTCTCAAACAAGTTCTTAATTCAAACAAGAAGTGTCTTTG 290
||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 196 AACGCCGGACTGTTGCTCCGGCCTCAAACAAGTTCTTAATTCCAACAAGAAGTGTCTTTG 255
Query 291 TGTGATCATTCAAGACAGGAATGATCCTGATTTGGGTCTCCAGATCAACGTCTCTCTAGC 350
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 256 TGTGATCATCCAAGATAGGAATGATCCTGATTTGGGTCTCCAGATCAACGTCTCTCTAGC 315
Query 351 TCTCGCACTTCCTTCTGTTTGTCACGCCGCTGCTGACGTCACTAAATGCCCTGCTTTGCT 410
||| || ||||||||||||||||||||| |||| ||| ||||||| || |||||||||||
Sbjct 316 TCTTGCTCTTCCTTCTGTTTGTCACGCCACTGCCGACATCACTAAGTGTCCTGCTTTGCT 375
Query 411 TCACTTGGATCCGAATTCTCCAGATGCCCAAGTCTTCTACCAGCTAGCTAAAGGTTTAAA 470
||||||||| || |||||||| ||||||||||||||||| |||||||||||||||| |||
Sbjct 376 TCACTTGGACCCAAATTCTCCGGATGCCCAAGTCTTCTATCAGCTAGCTAAAGGTTCAAA 435
Query 471 CAAAACCGGCCCAGCCTCTGCTCCCACTGGCTCGTCCCCTGGACCTATAAGCATTTCTCC 530
||||||| |||||||||||||||||||||||| | || |||| || | ||||| |||||
Sbjct 436 CAAAACCAGCCCAGCCTCTGCTCCCACTGGCTTGGCCTCTGGGCCCACCAGCATGTCTCC 495
Query 531 GACTTCAGGATCCGATGATGGTAACAACAGTGGTCGAACGACCTCTGTGCCAGGCAGGAA 590
||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 496 GACCGCAGGATCCGATGATGGTAACAACAGTGGTCGAACAACCTCCGTGCCAGGCAGGAA 555
Query 591 CCACGCTCAAAGCTTCTATAAACAATGGCTGGGGCTCGAAGTTGT-GTTCCATTTCTTCG 649
| |||||||||||||||||||||||||||| |||||||||||||| || |||||||||||
Sbjct 556 CAACGCTCAAAGCTTCTATAAACAATGGCTAGGGCTCGAAGTTGTTGT-CCATTTCTTCG 614
Query 650 TAATTTTTTATATTTTCATCCTCGTATAGATAAATAATGATAACGAAAA-CTGAAAAGCA 708
|||||||||||||||||||||||||||||||| ||||| |||||||||| | ||||||
Sbjct 615 TAATTTTTTATATTTTCATCCTCGTATAGATAGATAATAATAACGAAAAGC-GAAAAGTT 673
Query 709 TGTGATGTTGATTA-GTGAAATTGCGGTGACGCTGATTTTTGCAGTTACTGTTTTGATTG 767
||| | ||||||| ||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 674 TGTAACGTTGATTTTGTGAAATTGCGGTGACGCTGAGTTTTGCAGTTACTGTTTCGATTA 733
Query 768 GTGTATTTAATTCTAGTTCG 787
|| |||||||||||||||||
Sbjct 734 GTATATTTAATTCTAGTTCG 753
> Ahg935359 jgi|Araly1|935359|scaffold_403347.1
Length=658
Score = 750 bits (406), Expect = 0.0
Identities = 567/643 (88%), Gaps = 17/643 (3%)
Strand=Plus/Plus
Query 53 AACAAAACAAAAT-GGAGTCACGGAAGATTAACCTAATGGCGACAGCAATAGC-TT--TA 108
||| ||||||||| ||| ||| ||| |||||| |||||||||||||||||||| || ||
Sbjct 11 AAC-AAACAAAATGGGA-TCATGGAGGATTAATCTAATGGCGACAGCAATAGCTTTGATA 68
Query 109 ATAGTGGTGGCTATGGTGGTGGCA-GCTGCTGATGATAAGACGAAAGACAAGG-AGGAGT 166
|| ||||||||||||||||||| | || | ||||||||| ||||||||||| ||| ||
Sbjct 69 ATGGTGGTGGCTATGGTGGTGG-ATGCCGGAGATGATAAGGGGAAAGACAAGGAAGG-GT 126
Query 167 GTACGGAGCAGCTGGTCGGTATGGCCACGTGTCTTCCTTACGTGCAAGGACAAGCAAAAT 226
|||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 127 GTACGGAGCAGCTGGTGGGTATGGCCACATGTCTTCCTTACGTGCAAGGACAGGCAAAAT 186
Query 227 CTCCGACGCCAGACTGTTGCTCCGGTCTCAAACAAGTTCTTAATTCAAACAAGAAGTGTC 286
||||||||||||||||||||||||| |||||||| ||||| ||||| |||| ||||||||
Sbjct 187 CTCCGACGCCAGACTGTTGCTCCGGCCTCAAACAGGTTCTCAATTCCAACATGAAGTGTC 246
Query 287 TTTGTGTGATCATTCAAGACAGGAATGATCCTGATTTGGGTCTCCAGATCAACGTCTCTC 346
||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 247 TTTGTGTGATCATCCAAGACAGGAATGATCCTGATTTAGGTCTCCAGGTCAACGTCTCTC 306
Query 347 TAGCTCTCGCACTTCCTTCTGTTTGTCACGCCGCTGCTGACGTCACTAAATGCCCTGCTT 406
| ||||||| |||||||||||||| |||||| |||||||| ||||||| || |||||||
Sbjct 307 TCGCTCTCGGTCTTCCTTCTGTTTGCCACGCCACTGCTGACATCACTAAGTGTCCTGCTT 366
Query 407 TGCTTCACTTGGATCCGAATTCTCCAGATGCCCAAGTCTTCTACCAGCTAGCTAAAGGTT 466
||||||||||||| ||||| ||||| || ||||| || ||||| |||||||||||||||
Sbjct 367 TGCTTCACTTGGACCCGAAGTCTCCGGAGGCCCACGTGTTCTATCAGCTAGCTAAAGGTC 426
Query 467 TA-AACAAAACCGGCCCAGCCTCTGCTCCCACTGGCTCGTCCCCTG-GACCTATAAGCAT 524
| ||| |||| ||| |||||||||||||||||||||| | |||| | || | |||||
Sbjct 427 -AGAACGAAACGGGCAAAGCCTCTGCTCCCACTGGCTCGGCTCCTGAGCCC-ACCAGCAT 484
Query 525 TTCTCCGACTTCAGGATCCGATGATGGTAACAACAGTGGTCGAACGACCTCTGTGCCAGG 584
||| |||| ||||||||| || |||||||||||||||||| |||||||||| ||||||
Sbjct 485 GTCTTCGACCCCAGGATCCGGTGCTGGTAACAACAGTGGTCGGACGACCTCTGCGCCAGG 544
Query 585 CAGGAACCACGCTCAAAGCTTCTATAAACAATGGCTGGGGCTCGAAGTTGTGTTCC-ATT 643
||||||||||||||||||||||| |||||||||||| |||||||||||||| | || |||
Sbjct 545 CAGGAACCACGCTCAAAGCTTCTCTAAACAATGGCTAGGGCTCGAAGTTGT-TGCCCATT 603
Query 644 TCTTCGTAATTTTTTATATTTTCATCCTCGTATAGATAAATAA 686
||||||||||||||| ||||||||||||| | ||||||| |||
Sbjct 604 TCTTCGTAATTTTTTGTATTTTCATCCTCATTTAGATAA-TAA 645
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30955808604
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5