BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G44310.1

Length=615
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg935361 jgi|Araly1|935361|scaffold_403349.1                        706    0.0  


> Ahg935361 jgi|Araly1|935361|scaffold_403349.1
Length=470

 Score =  706 bits (382),  Expect = 0.0
 Identities = 442/471 (94%), Gaps = 4/471 (1%)
 Strand=Plus/Plus

Query  54   AAAAC-GAAAAGTGAAGAAAAATGGGAGTAGTACTGATCGATGGATCAACGGTACGATCT  112
            ||||| ||| | ||||| ||||||||||| ||| ||||||||||||||||||||||||||
Sbjct  2    AAAACTGAAGACTGAAG-AAAATGGGAGTCGTAGTGATCGATGGATCAACGGTACGATCT  60

Query  113  TTTGTAGACGACGAAGAGCAATTCaaaaaaaGCGTCGACGAGAGGTTCGCAGCTCTGGAT  172
            ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  61   TTTGTGGACGACGAAGAGCAATTCAAAAAAAGCGTCGACGAGAGGTTCACAGCTCTGGAT  120

Query  173  CTGAACAAAGACGGCGTTTTATCGCGATCGGAGCTACGAAAAGCGTTTGAATCGATGAGG  232
            ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct  121  CTGAACAAAGACGGCGTTTTATCGCGATCGGAGTTACGAAAGGCGTTTGAATCGATGAGG  180

Query  233  CTACTTGAATCGCACTTTGGCGTTGATGTGGTGACTCCTCAGGACGAGCTGACGAACCTC  292
            ||||||||||||||||| || || |||||||||||||||| ||| ||||| ||||| |||
Sbjct  181  CTACTTGAATCGCACTTCGGTGTCGATGTGGTGACTCCTCCGGAGGAGCTAACGAAGCTC  240

Query  293  TACGATTCGATCTTCGAGAAATTCGATACGGATCAAAGCGGTTCTGTGGATCTGGAGGAG  352
            ||||| ||||||||||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct  241  TACGACTCGATCTTCGAGAAATTTGATACGGACCAGAGCGGTTCTGTGGATCTGGAGGAG  300

Query  353  TTTAGATCGGAGATGAAGAAGATCGTGCTTGCGATTGCTGATGGGCTTGGATCTTGTCCG  412
            ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct  301  TTTAGATCGGAGATGAAGAAGATCGTGCTTGCGATTGCTGATGGGCTCGGGTCTTGTCCG  360

Query  413  ATTACGATGGTGTTAGATGATGATGATGATAATTT-CTTGAAAAAAGCTGCGGATTTGGA  471
            || ||||||||||||||||||||||| |||||||| || |||||||||||||||||||||
Sbjct  361  ATAACGATGGTGTTAGATGATGATGAGGATAATTTTCT-GAAAAAAGCTGCGGATTTGGA  419

Query  472  AGCTTCCAAGCTTGAGAAAGCTTCTTCGTAATGGTGATGGATGgttttggg  522
            |||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct  420  AGCTTCCAAGTTTGAGAAAGCTTCTTCGTGATGGTGATGGATGGTTTTGGG  470



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22492521030


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5