BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G44310.1 Length=615 Score E Sequences producing significant alignments: (Bits) Value Ahg935361 jgi|Araly1|935361|scaffold_403349.1 706 0.0 > Ahg935361 jgi|Araly1|935361|scaffold_403349.1 Length=470 Score = 706 bits (382), Expect = 0.0 Identities = 442/471 (94%), Gaps = 4/471 (1%) Strand=Plus/Plus Query 54 AAAAC-GAAAAGTGAAGAAAAATGGGAGTAGTACTGATCGATGGATCAACGGTACGATCT 112 ||||| ||| | ||||| ||||||||||| ||| |||||||||||||||||||||||||| Sbjct 2 AAAACTGAAGACTGAAG-AAAATGGGAGTCGTAGTGATCGATGGATCAACGGTACGATCT 60 Query 113 TTTGTAGACGACGAAGAGCAATTCaaaaaaaGCGTCGACGAGAGGTTCGCAGCTCTGGAT 172 ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 61 TTTGTGGACGACGAAGAGCAATTCAAAAAAAGCGTCGACGAGAGGTTCACAGCTCTGGAT 120 Query 173 CTGAACAAAGACGGCGTTTTATCGCGATCGGAGCTACGAAAAGCGTTTGAATCGATGAGG 232 ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| Sbjct 121 CTGAACAAAGACGGCGTTTTATCGCGATCGGAGTTACGAAAGGCGTTTGAATCGATGAGG 180 Query 233 CTACTTGAATCGCACTTTGGCGTTGATGTGGTGACTCCTCAGGACGAGCTGACGAACCTC 292 ||||||||||||||||| || || |||||||||||||||| ||| ||||| ||||| ||| Sbjct 181 CTACTTGAATCGCACTTCGGTGTCGATGTGGTGACTCCTCCGGAGGAGCTAACGAAGCTC 240 Query 293 TACGATTCGATCTTCGAGAAATTCGATACGGATCAAAGCGGTTCTGTGGATCTGGAGGAG 352 ||||| ||||||||||||||||| |||||||| || |||||||||||||||||||||||| Sbjct 241 TACGACTCGATCTTCGAGAAATTTGATACGGACCAGAGCGGTTCTGTGGATCTGGAGGAG 300 Query 353 TTTAGATCGGAGATGAAGAAGATCGTGCTTGCGATTGCTGATGGGCTTGGATCTTGTCCG 412 ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 301 TTTAGATCGGAGATGAAGAAGATCGTGCTTGCGATTGCTGATGGGCTCGGGTCTTGTCCG 360 Query 413 ATTACGATGGTGTTAGATGATGATGATGATAATTT-CTTGAAAAAAGCTGCGGATTTGGA 471 || ||||||||||||||||||||||| |||||||| || ||||||||||||||||||||| Sbjct 361 ATAACGATGGTGTTAGATGATGATGAGGATAATTTTCT-GAAAAAAGCTGCGGATTTGGA 419 Query 472 AGCTTCCAAGCTTGAGAAAGCTTCTTCGTAATGGTGATGGATGgttttggg 522 |||||||||| |||||||||||||||||| ||||||||||||||||||||| Sbjct 420 AGCTTCCAAGTTTGAGAAAGCTTCTTCGTGATGGTGATGGATGGTTTTGGG 470 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22492521030 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5