BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G44330.1

Length=600
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg483558 jgi|Araly1|483558|fgenesh2_kg.4__2618__AT2G44330.1         494    4e-139


> Ahg483558 jgi|Araly1|483558|fgenesh2_kg.4__2618__AT2G44330.1
Length=556

 Score =  494 bits (267),  Expect = 4e-139
 Identities = 350/388 (90%), Gaps = 14/388 (4%)
 Strand=Plus/Plus

Query  210  TTCGAAGACGATGAGGAATCTC-AGTTTCTCGATCCCATGGAATCTCTTCCGACCATTAA  268
            ||||||||||| |||||||||| | ||||||||| |||||||||||||||||||| || |
Sbjct  172  TTCGAAGACGACGAGGAATCTCTA-TTTCTCGATTCCATGGAATCTCTTCCGACCGTTGA  230

Query  269  GATCTCATCTTCAATGTTGTCTTCCGCTTCCTCAGACGATTCTGCTTTACCATGTGCCAT  328
            ||||||||||||||||||||||| |||||||||||||||||||  ||||||||| |||||
Sbjct  231  GATCTCATCTTCAATGTTGTCTTGCGCTTCCTCAGACGATTCTAATTTACCATGCGCCAT  290

Query  329  TTGCAGAGAAGATTTCGTGGTTGGAGAATCTGCTAGGAGATTGCCATGCAACCATTTATA  388
            ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  291  TTGTAGAGAAGATTTCGTGGTTGGAGAATCTGCTAGGAAATTGCCATGCAACCATTTATA  350

Query  389  CCATAATGA-TTGCATTATTCCTTGGCTCACAAGTCATAACTCGTGCCCTCTCTGTCGAG  447
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  351  CCATAATGATTTGCATTATTCCTTGGCTCACAAGTCATAACTCGTGCCCTCTCTGTCGAT  410

Query  448  TTGAGCTCCCGGTTGCATCTAGTGAAGACGATAGTGGTCTGGAC-ATGTGGTTTGATGCT  506
            |||||||||| ||||||| ||||| |||||| ||||||||| || |||||||||||||| 
Sbjct  411  TTGAGCTCCCAGTTGCATTTAGTGGAGACGACAGTGGTCTG-ACCATGTGGTTTGATGCA  469

Query  507  TTGAACCTAGAGGACGACTTG-GA---G-G--AAGA-AGCGGGAGTCACGCTCGATTTGG  558
            |||| |||||||||||||||| |    | |  |||| | ||| |||||| |||| |||| 
Sbjct  470  TTGACCCTAGAGGACGACTTGCGTCTTGCGGGAAGATA-CGGTAGTCACTCTCGCTTTGT  528

Query  559  AGCAAAGTTTAGACGGCTAAAATTCTAG  586
            | |||||||||||||||||||||| |||
Sbjct  529  ACCAAAGTTTAGACGGCTAAAATTGTAG  556


 Score =  217 bits (117),  Expect = 9e-56
 Identities = 146/159 (92%), Gaps = 6/159 (4%)
 Strand=Plus/Plus

Query  1    CTTCTAAATTTCCTCAACCACCAACCACCTTCTCAATGTCGTCCTCCTCTACCCAAAACC  60
            |||||||||||||||||||||| |  | |||||||||||||||||||||||||||| |||
Sbjct  1    CTTCTAAATTTCCTCAACCACC-A--A-CTTCTCAATGTCGTCCTCCTCTACCCAATACC  56

Query  61   AATTGGAGATGCGGGATTACACGTGTCCGGAATGTAACAT-AGGTCTTAGGGTTCTCTCA  119
            || ||||||||||| ||||||||||||| ||||||||||| | | |||||||||||||||
Sbjct  57   AACTGGAGATGCGGAATTACACGTGTCCAGAATGTAACATAATG-CTTAGGGTTCTCTCA  115

Query  120  TTGCCTTCCGCTTCTCCTCCATACTGTCCTCTATGCAAT  158
            | |||||| ||||||||||||||||||||||||||||||
Sbjct  116  TCGCCTTCTGCTTCTCCTCCATACTGTCCTCTATGCAAT  154



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21977619264


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5