BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G44340.1

Length=567
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg483559 jgi|Araly1|483559|fgenesh2_kg.4__2619__AT2G44340.1         793    0.0  


> Ahg483559 jgi|Araly1|483559|fgenesh2_kg.4__2619__AT2G44340.1
Length=507

 Score =  793 bits (429),  Expect = 0.0
 Identities = 482/508 (95%), Gaps = 2/508 (0%)
 Strand=Plus/Plus

Query  1    ATGGAGATTACTCAATATCAAAGTTTTCATGAAGGTTCGAGTTCTAGGGTTTCCATGAAC  60
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  1    ATGGAGATTACTCAATATCAAAGTTTTAATGAAGGTTCGAGTTCTAGGGTTTCCATGAAC  60

Query  61   AGGAATTCACAAGTAATATCCAAGATCAAACCCAAGATTCGCATAATCCATATATTTGCA  120
            | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  61   AAGAATTCACAAGTAATATCCAAGATCAAACCCAAGATTCGCATAATCCATATATTCGCA  120

Query  121  CCGGAGGTCATCAAGACCGACGTCAAGAACTTTCGTTCACTCGTCCAGAGTCTAACCGGG  180
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  121  CCGGAGGTCATCAAGACCGACGTCAAGAACTTCCGTTCACTCGTCCAGAGTCTAACCGGG  180

Query  181  AAACCGGCACCGGGAGAAGCCAAAACCGGTAAAAAGAGAGCCAAATCAAGAATTACGAC-  239
            ||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||| 
Sbjct  181  AAACCGGCACCGGGAGAGGCCAAAACCGGTAAAAAGAGAGCCAAATCGAGAATTCCGACG  240

Query  240  TCCCCAAGAACCGGTTTGCGATGATCATCAGCCGGTCAACAGGCTTTCGGGTTTCACCGG  299
            | |||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||
Sbjct  241  T-CCCAAGAACCGGTTGGCGAAAATCATCAGCCGGTCAACAGGCTTTCGGGTTTCACCGG  299

Query  300  TTTACTAGCAAACGGAGGAAACCACCAGGTGAAAGAAGAGTGGGGATCAGGTGATCAGAG  359
            |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct  300  TTTACTAGCAAACGGAGGAAACCATCAGGTGAAAGAAGAATGGGGATCAGGTGATCAGAG  359

Query  360  TACTTCGAACACAAACACGTACTTTGATCTAGAAGGTTTAATTCAAGATGTCGGAGAAGA  419
            |||||| ||||||| ||| |||||||||||||||||||| || |||||||||||||||||
Sbjct  360  TACTTCAAACACAAGCACTTACTTTGATCTAGAAGGTTTGATCCAAGATGTCGGAGAAGA  419

Query  420  TTACTTCTCTTCGTTTCCCATGAGATCCTCTTCTTCTTCACAAGTCGAAGGTTTCATCTT  479
            ||||||| | || |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  420  TTACTTCACCTCCTTTCCCATGAGATCCTCTTCTTCTTCACAAGTTGAAGGTTTCATCTT  479

Query  480  caacaacaacaacaacaacaacaacaac  507
            ||||||||||| ||||| ||||| ||||
Sbjct  480  CAACAACAACACCAACACCAACACCAAC  507



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20718484827


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5