BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44350.2
Length=1822
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483560 jgi|Araly1|483560|fgenesh2_kg.4__2620__AT2G44350.2 2832 0.0
Ahg486475 jgi|Araly1|486475|fgenesh2_kg.5__2467__AT3G60100.1 1395 0.0
> Ahg483560 jgi|Araly1|483560|fgenesh2_kg.4__2620__AT2G44350.2
Length=1779
Score = 2832 bits (1533), Expect = 0.0
Identities = 1712/1792 (96%), Gaps = 37/1792 (2%)
Strand=Plus/Plus
Query 36 ACACGCAGACGCAGCTTTTAG-TAtttttttCAACAATCGCttttttttttCTCGATCTC 94
||||||||||||||||||| | | ||||||||||||||||| ||||||||||||||||
Sbjct 20 ACACGCAGACGCAGCTTTTTGTTTTTTTTTTCAACAATCGC---TTTTTTTCTCGATCTC 76
Query 95 CGTGAAGCTCTCGAATCTCTGGTTTTGAGTTTTGGAGAATGGTGTTTTTCCGCAGCGTAT 154
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 77 CGTCAAGCTCCCGAATCTCTGGTTTTGAGTTTTGGAGAATGGTGTTTTTCCGCAGCGTAT 136
Query 155 CGGCCTTTACTAGGCTGAGGTCTCGCGTCCAGGGCCAACAATCTTCACTCAGCAATTCTG 214
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
Sbjct 137 CGGCCTTTACTAGGCTGAGGTCTCGCGTCCAGGGGCAACAATCTTCGCTCAGCAATTCGG 196
Query 215 TCAGATGGATTCAGATGCAGAGCTCTACCGACCTGGACCTGAAGTCGCAGCTGCAAGAGT 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 197 TCAGATGGATTCAGATGCAGAGCTCTACCGACCTGGACCTGAAGTCGCAGCTGCAAGAGT 256
Query 275 TAATTCCGGAACAGCAGGACCGTCTGAAGAAACTGAAGTCAGAACATGGGAAGGTCCAAC 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 257 TAATTCCGGAACAGCAGGACCGTCTGAAGAAACTGAAGTCAGAACATGGGAAGGTCCAAC 316
Query 335 TGGGAAACATCACTGTTGATATGGTTATTGGTGGAATGAGAGGGATGACTGGATTGCTTT 394
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 317 TGGGAAACATCACTGTTGATATGGTTATCGGTGGGATGAGAGGGATGACTGGATTGCTTT 376
Query 395 GGGAAACCTCATTGCTTGACCCGGAAGAGGGTATTCGCTTTAGGGGATTGTCGATTCCTG 454
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 377 GGGAAACCTCATTGCTTGACCCGGAAGAGGGTATTCGCTTTAGGGGCTTGTCAATTCCTG 436
Query 455 AGTGCCAGAAAGTATTACCTACTGCCCAGTCTGGAGCTGAACCATTACCGGAGGGTCTTT 514
||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 437 AGTGCCAAAAAGTATTACCTACTGCCCAGTCTGGAGCAGAACCATTACCGGAGGGTCTGT 496
Query 515 TGTGGCTTCTCTTAACTGGAAAGGTACCTAGCAAAGAGCAAGTTGAAGCACTGTCGAAAG 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 497 TGTGGCTTCTCTTAACTGGAAAGGTACCTAGCAAAGAGCAAGTTGAAGCACTGTCGAAAG 556
Query 575 ACTTGGCGAA-CCGTGCTGCTGTGCCAGATTATGTGTACAATGCCATCGATGCTCTGCCT 633
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 557 ACTTGGC-AAGCCGTGCTGCTGTGCCAGATTATGTGTACAATGCCATCGATGCTCTGCCT 615
Query 634 TCCACAGCTCATCCAATGACTCAATTTGCTAGCGGTGTTATGGCCCTCCAGGTGCAAAGT 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 616 TCCACAGCTCATCCAATGACTCAATTTGCTAGCGGTGTTATGGCCCTCCAGGTGCAAAGT 675
Query 694 GAGTTTCAAAAGGCATATGAGAATGGAATTCATAAGTCAAAGTTCTGGGAGCCAACATAT 753
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 676 GAGTTCCAAAAGGCATATGAGAATGGAATTCATAAGTCAAAGTTCTGGGAGCCAACATAT 735
Query 754 GAGGATTGCCTCAACCTGATTGCTCGTGTTCCTGTTGTAGCTGCATATGTTTATCGAAGG 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 736 GAGGATTGCCTCAACCTGATTGCTCGTGTTCCTGTTGTAGCTGCATATGTTTATCGAAGG 795
Query 814 ATGTATAAGAATGGTGATTCCATTCCCTCAGATAAATCTTTGGATTATGGTGCAAATTTT 873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 796 ATGTATAAGAATGGTGATTCCATTCCCTCAGATAAATCTTTGGATTATGGTGCAAATTTT 855
Query 874 TCCCACATGTTGGGATTTGATGATGAAAAGGTGAAAGAGCTCATGAGGCTTTACATCACC 933
|||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 856 TCCCACATGTTGGGATTTGATGATGAAAAGATGAAAGAGCTTATGAGGCTTTACATCACT 915
Query 934 ATCCACAGTGATCATGAAGGTGGAAATGTTAGTGCTCACACTGGTCACCTGGTTGGTAGT 993
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 916 ATCCACAGTGATCATGAAGGTGGAAATGTTAGTGCTCACACTGGTCACCTGGTCGGTAGT 975
Query 994 GCACTTTCAGACCCATATCTGTCATTTGCAGCTGCATTAAATGGTTTAGCTGGGCCACTC 1053
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 976 GCACTTTCAGATCCATATCTGTCATTTGCAGCTGCATTAAATGGTTTAGCTGGGCCACTC 1035
Query 1054 CATGGTTTGGCTAATCAGGAAGTTTTGCTTTGGATCAAATC-AGTCGTAGAGGAATGTGG 1112
||||||||||||||||||||||||||||||||||||||| | ||| || |||||||||||
Sbjct 1036 CATGGTTTGGCTAATCAGGAAGTTTTGCTTTGGATCAAA-CAAGTTGTCGAGGAATGTGG 1094
Query 1113 AGAAGATATATCAAAAGAACAGTTGAAAGAATATGTTTGGAAAACATTAAACAGTGGCAA 1172
|||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1095 AGAAGACGTATCGAAAGAACAGTTGAAAGAATATGTTCAGAAAACATTAAACAGTGGCAA 1154
Query 1173 GGTTATTCCGGGATATGGTCACGGTGTTCTGCGCAATACTGATCCAAGATATGTATGCCA 1232
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1155 GGTTGTTCCGGGATATGGACACGGTGTTCTGCGCAATACTGATCCAAGATATGTATGCCA 1214
Query 1233 AAGAGAATTTGCCTTGAAGCATCTACCTGACGACCCTCTTTTCCAGCTGGTGTCAAAGCT 1292
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1215 AAGAGAATTTGCCTTGAAGCATCTACCTGATGACCCTCTTTTCCAGCTGGTGTCAAAGCT 1274
Query 1293 TTATGAAGTTGTGCCTCCTGTTCTCACTGAGCTTGGAAAGGTGAAGAACCCGTGGCCAAA 1352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1275 TTATGAAGTTGTGCCTCCTGTTCTCACTGAGCTTGGAAAGGTGAAGAACCCGTGGCCAAA 1334
Query 1353 TGTTGATGCTCACAGTGGGGTCTTGCTGAACCACTATGGTCTAACCGAAGCAAGGTACTA 1412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1335 TGTTGATGCTCACAGTGGGGTCTTGCTGAACCACTATGGTCTAACCGAAGCAAGGTACTA 1394
Query 1413 CACCGTGCTCTTTGGTGTTTCAAGGAGTCTTGGCATCTGCTCTCAGCTTATATGGGACCG 1472
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1395 CACCGTGCTCTTTGGTGTTTCAAGGAGTCTTGGCATCTGCTCTCAGCTAATATGGGACCG 1454
Query 1473 AGCTCTTGGACTTGCACTTGAGAGGCCAAAGAGTGTTACCATGGACTGGCTTGAAGCCCA 1532
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1455 AGCTCTTGGACTTGCACTTGAGAGGCCAAAGAGTGTTACAATGGACTGGCTTGAAGCCCA 1514
Query 1533 TTGTAAGAAAGCTTCATCTGCTTAAGTCACCACCGAGTCCTGAGTTGTCGCACTCTCTCG 1592
|||||||||||||||||||||||||| | | ||| | ||| | || |
Sbjct 1515 TTGTAAGAAAGCTTCATCTGCTTAAG-C-C-ACC-A--CCT-------C----TC----G 1553
Query 1593 TGTTTCAACAAAAGTCATTCTCTTCCACACTGGATAGCtttttttgtttttACCTTCTAT 1652
||||| |||||||| ||||||||||||||||| ||||| |||||| | |||||||||
Sbjct 1554 TGTTTAAACAAAAGCCATTCTCTTCCACACTGAATAGCCTTTTTT-T----ACCTTCTAT 1608
Query 1653 T-GACAGAAGAAACATTTGTTCATGTAGAAATTGTTCCTGAGAAACACATGCTTGGTGCA 1711
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1609 TTGACAGAAGAAACATTTGTTCATGTAGAAATTGTTCCTGAGAAACACATGCTTGGTGCA 1668
Query 1712 AATTTGCATTTCCGGGAAA-CTCGTGATAATAAATAAACAGTTGTATTCAGTTTGCGTAA 1770
|||||||||| |||||||| |||||||||||||||||||||||||||||| ||||| |||
Sbjct 1669 AATTTGCATT-CCGGGAAAACTCGTGATAATAAATAAACAGTTGTATTCAATTTGCATAA 1727
Query 1771 AAATCAAACATCAATATCACTCATGAATTAAAGCTTATCTTGGTTTTGATAT 1822
| ||| ||||||||||||||||||||||| |||||| |||| ||||||||||
Sbjct 1728 ACATCCAACATCAATATCACTCATGAATTTAAGCTTTTCTTAGTTTTGATAT 1779
> Ahg486475 jgi|Araly1|486475|fgenesh2_kg.5__2467__AT3G60100.1
Length=1608
Score = 1395 bits (755), Expect = 0.0
Identities = 1201/1410 (85%), Gaps = 56/1410 (4%)
Strand=Plus/Plus
Query 130 AGAATGGT-GTTTTTCCGCAGCGTATCGGCC-TTTACTAGGCTGAGGTCTCGCGTCCAGG 187
|||||||| |||||| || ||| |||| ||| ||| | ||||| ||||||| | |||
Sbjct 2 AGAATGGTGGTTTTT-CGTAGCTTATCAGCCATTT-CAAGGCTTCGGTCTCGAG--CAGT 57
Query 188 GCCAACAATCTTCACTCAGCAATTCTGTCAGATGGATTCAGATGCAGAGCTCTACCGACC 247
| |||||||| ||||| ||||| || ||||||||| | | | | |||| | ||
Sbjct 58 G-CAACAATCCTCACTTAGCAACTCCGTCAGATGG---C---T-C-CA-CTCTTCTGAAT 107
Query 248 TGGACCTGAAGTCGCAGCTGCAAGAGTTAATTCCGGAACAGCAGGACCGTCTGAAGAAAC 307
||||| ||||||||||| |||||||| | ||||| ||||| ||||||||| |||||||||
Sbjct 108 TGGACTTGAAGTCGCAGATGCAAGAGATCATTCCAGAACAACAGGACCGTTTGAAGAAAC 167
Query 308 TGAAGTCAGAACATGGGAAGGTCCAACTGGGAAACATCACTGTTGATATGGTTA-TTGGT 366
|||| ||||||||||| ||||||| | |||| |||||||| |||||||||| || |||||
Sbjct 168 TGAAATCAGAACATGGAAAGGTCCCAGTGGGGAACATCACCGTTGATATGG-TACTTGGT 226
Query 367 GGAATGAGAGGGATGACTGGATTGCTTTGGGAAACCTCATTGCTTGACCCGGAAGAGGGT 426
||||||||||||||||||||||| || |||||||||||||||||||| | || |||||
Sbjct 227 GGAATGAGAGGGATGACTGGATTACTCTGGGAAACCTCATTGCTTGATGCAGATGAGGGA 286
Query 427 ATTCGCTTTAG-GGGATTGTCGATTCCTGAGTGCCAGAAAGTATTACCTACTGCCCAGTC 485
|| |||||||| || | ||||||||||||| ||||| |||||||||||| | || |||||
Sbjct 287 ATACGCTTTAGAGGCA-TGTCGATTCCTGAATGCCAAAAAGTATTACCTTCAGCTCAGTC 345
Query 486 TGGAGCTGAACCATTACCGGAGGGTCTTTTGTGGCTTCTCTTAACTGGAAAGGTACCTAG 545
||||| || || || || ||||||||| |||||||||| |||||||||||||| || |
Sbjct 346 TGGAGAAGAGCCCTTGCCTGAGGGTCTTCTGTGGCTTCTGTTAACTGGAAAGGTGCC-AA 404
Query 546 C-AAAGAGCAAGTTGAA-GCACTGTCGAAAGACTTGGCGAACCGTGCTGCTGTGCCAGAT 603
| |||||||||||| || || |||| ||||| ||||| | ||||| ||||||||
Sbjct 405 CTAAAGAGCAAGTT-AATGCTTTGTCAAAAGAGTTGGCTCATCGTGCGGCTGTGCC---- 459
Query 604 TATGTGTACAATGCCATCGATGCTCTGCCTTCCACAGCTCATCCAATGACTCAATTTGCT 663
| | | | || ||||| |||||||| |||||||||||||||||||||||||||
Sbjct 460 -A---G--C--T---ATAGATGCCCTGCCTTCAACAGCTCATCCAATGACTCAATTTGCT 508
Query 664 AGCGGTGTTATGGCCCTCCAGGTGCAAAGTGAGTTTCAAAAGGCATATGAG-AATG-GA- 720
|| || ||||||||||| ||||| |||||||||||||| |||||||||||| | | ||
Sbjct 509 AGTGGGGTTATGGCCCTTCAGGTTCAAAGTGAGTTTCAGAAGGCATATGAGCAGGGTGAT 568
Query 721 ATTCATAAGTCAAAGTTCTGGGAGCCAACATATGAGGATTGC-CTCAACCTGATTGCTCG 779
|||||||||||||||| |||||||||||| | |||||| ||| || ||| ||||||||||
Sbjct 569 ATTCATAAGTCAAAGTACTGGGAGCCAACCTTTGAGGA-TGCACTAAACTTGATTGCTCG 627
Query 780 TGTTCCTGTTGTAGCTGCATATGTTTATCGAAGGATGTATAAGAATGGT-G-ATTCCATT 837
|||||||||| ||||| |||| ||||||||||||||||| ||| ||||| | | | ||||
Sbjct 628 TGTTCCTGTTCTAGCTTCATACGTTTATCGAAGGATGTACAAGGATGGTAGCA-T-CATT 685
Query 838 CCCTCAGATAAATCTTTGGATTATGGTGCAAATTTTTCCCACATGTTGGGATTTGATGA- 896
|| | |||| | |||||||||||||||||||||||||| |||||| |||||| |||| |
Sbjct 686 CCATTAGATGATTCTTTGGATTATGGTGCAAATTTTTCACACATGCTGGGATATGAT-AG 744
Query 897 TGAAAAGGTGAAAGAGCTCATGAGGCTTTACATCACCATCCACAGTGATCATGAAGGTGG 956
| || ||||||| |||||||||||||| |||| |||||||||||||||||||||||
Sbjct 745 TCCTCAGATGAAAGAACTCATGAGGCTTTATGTCACTATCCACAGTGATCATGAAGGTGG 804
Query 957 AAATGTTAGTGCTCACACTGGTCACCTGGTTGGTAGTGCACTTTCAGACCCATATCTGTC 1016
|||||||||||||||| |||||||||||||||| |||||||||||||| |||||||| ||
Sbjct 805 AAATGTTAGTGCTCACGCTGGTCACCTGGTTGGGAGTGCACTTTCAGATCCATATCTTTC 864
Query 1017 ATTTGCAGCTGCATTAAATGGTTTAGCTGGGCCACTCCATGGTTTGGCTAATCAGGAAGT 1076
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 865 ATTTGCAGCTGCTTTAAATGGTTTAGCTGGTCCACTCCATGGTTTGGCTAATCAGGAAGT 924
Query 1077 TTTGCTTTGGATCAAATCAGTCGTAGAGGAATGTGGAGAAGATATATCAAAAGAACAGTT 1136
||||||||||||||||||||| || ||||||||||||||| |||| ||||| |||||| |
Sbjct 925 TTTGCTTTGGATCAAATCAGTTGTCGAGGAATGTGGAGAAAATATTTCAAAGGAACAGCT 984
Query 1137 GAAAGAATATGTTTGGAAAACATTAAACAGTGGCAAGGTTATTCCGGGATATGGTCACGG 1196
||||| ||||| |||||||| |||||||||||||||||| |||| |||||||| || ||
Sbjct 985 AAAAGATTATGTCTGGAAAACGTTAAACAGTGGCAAGGTTGTTCCAGGATATGGCCATGG 1044
Query 1197 TGTTCTGCGCAATACTG-ATCCAAGATATGTATGCCAAAGAGAATTTGCCTTGAAGCATC 1255
|||| | || || || | ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1045 TGTTTTACGTAA-ACCGGATCCAAGATATGTATGCCAAAGAGAGTTTGCCTTGAAGCATC 1103
Query 1256 TACCTGACGACCCTCTTTTCCAGCTGGTGTCAAAGCTTTATGAAGTTGTGCCTCCTGTTC 1315
||||||| || |||||||| |||||||| ||||||||||||||||| ||||||||| |||
Sbjct 1104 TACCTGATGATCCTCTTTTTCAGCTGGTCTCAAAGCTTTATGAAGTGGTGCCTCCTATTC 1163
Query 1316 TCACTGAGCTTGGAAAGGTGAAGAACCCGTGGCCAAATGTTGATGCTCACAGTGGGGT-C 1374
| || ||||| |||||||| |||||||||||||| || ||||||||||| ||||| || |
Sbjct 1164 TAACCGAGCTGGGAAAGGTCAAGAACCCGTGGCCTAACGTTGATGCTCATAGTGGAGTGC 1223
Query 1375 TTGCTGAACCACTATGGTCTAACCGAAGCAAGGTACTACACCGTGCTCTTTGGTGTTTCA 1434
| ||||||| |||||||||||||||||||||| |||||||| ||||| ||||| || |||
Sbjct 1224 T-GCTGAACTACTATGGTCTAACCGAAGCAAGATACTACACAGTGCTTTTTGGAGTCTCA 1282
Query 1435 AGGAGTCTTGGCATCTGCTCTCAGCTTATATGGGACCGAGCTCTTGGACTTGC-ACTTGA 1493
|| |||||||||||||| || ||||| ||||||||| | || |||||||| || ||||||
Sbjct 1283 AGAAGTCTTGGCATCTGTTCGCAGCTGATATGGGACAGGGCACTTGGACT-GCCACTTGA 1341
Query 1494 GAGGCCAAAGAGTGTTACCATGGACTGGCT 1523
||| ||||||||||| | ||||||||||||
Sbjct 1342 GAGACCAAAGAGTGTAAACATGGACTGGCT 1371
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68410080020
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5