BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44360.1
Length=643
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483562 jgi|Araly1|483562|fgenesh2_kg.4__2622__AT2G44360.1 652 0.0
> Ahg483562 jgi|Araly1|483562|fgenesh2_kg.4__2622__AT2G44360.1
Length=489
Score = 652 bits (353), Expect = 0.0
Identities = 441/482 (91%), Gaps = 11/482 (2%)
Strand=Plus/Plus
Query 47 TCAGGAGCAGTAATTAAAATTGATTATTTTGATTATAAAATAACTCAAGAGAGATCACAG 106
|||| ||||||||||||| |||||| ||||||| | ||||||| || | ||| | ||
Sbjct 19 TCAGAAGCAGTAATTAAATTTGATTTTTTTGATAAGAAAATAA---AAAAAAGA-GA-AG 73
Query 107 AGAGATATGGCGGAGGGTAAACCCGACGAGCAGCTCTTTCAGCTTCTTTCGGGTCTTCTT 166
||||||||||| || |||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 74 AGAGATATGGCTGATGGTAAACCCGACGAACAGCTCTTTCAGCTTCTATCGGGTCTTCTT 133
Query 167 CAACAGGTAGAATCATTGACAAATACAGAAGAGGTTGAGCTACGTTCTAAGATTGAAGCT 226
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 134 CAACATGTGGAATCATTGACAAATACAGAAGAGGTTGAGCTACGTTCTAAGATTGAAGCT 193
Query 227 CTTGGTTTAGAAGTCACTAAAGTGCCATCAAAGTCTGCTCAACACCTCAATGAGGTGGAG 286
||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct 194 CTTGGTTTAGAAGTCACCAAAGTGCCTTCAAAATCTGCTCAACACCTCAATGAGGTGGAG 253
Query 287 ATAGCTAAGGAATTGGACAAGTTATCAGCAAAGTTAGATGATGTGGATGAGATGATATCA 346
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 254 ATAGCTAAGGAATTAAACAAGTTATCAGCAAAGTTAGATGATGTAGATGAGATGATTTCA 313
Query 347 TCAGCTATAGCTTCTGATCCACAGGTTCAGACGCTTCTTAGCGGCACAGCTGATGTTTGG 406
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 314 TCTGCTATAGCTTCTGATCCACAGGTTCAGACGCTTCTTAGCGGCACAGCTGATGTTTGG 373
Query 407 ATGCCGGTTATCACTGCCGGCGCCGAAGAGAGACTCAACTTCACAGCCTCTCTTGCTGAT 466
|||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||| ||
Sbjct 374 ATGCCGGTTATCACTGCCGGGGCCGAGGAGAGACTTAACTTCACAGCCTCTCTTGCTCAT 433
Query 467 GATGATGACCTTTCTAACAAGGAGACTACTACCGACAATACCAGCAGCTCTTAATCCCAT 526
|||||||| |||||||| ||||| ||||||| |||| |||||| ||||||||||||
Sbjct 434 GATGATGAGCTTTCTAAGAAGGA---TACTACCAACAAGACCAGC---TCTTAATCCCAT 487
Query 527 TT 528
||
Sbjct 488 TT 489
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23559962706
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5