BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44410.1
Length=1774
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935374 jgi|Araly1|935374|scaffold_403362.1 1831 0.0
> Ahg935374 jgi|Araly1|935374|scaffold_403362.1
Length=1260
Score = 1831 bits (991), Expect = 0.0
Identities = 1197/1291 (93%), Gaps = 36/1291 (3%)
Strand=Plus/Plus
Query 290 TTTGGTGTTCTTTGAGCTCTCATGTCAACTAGTGTTCAAGGAGAGACAATGGATCTTGAT 349
|||||||||||||||||||| ||| | | | |||||||||||||||||||||||||||||
Sbjct 1 TTTGGTGTTCTTTGAGCTCTGATGACGAGTGGTGTTCAAGGAGAGACAATGGATCTTGAT 60
Query 350 TTGAATCAAGAGCCGTCTTCTGATTCGGAGTCTCCGGGTGGTTTGATGACGGCGCTTTCT 409
|||||||||||||| ||||||||||| |||||||| |||||||||||||| | |||||||
Sbjct 61 TTGAATCAAGAGCCATCTTCTGATTCCGAGTCTCCAGGTGGTTTGATGACAGAGCTTTCT 120
Query 410 CCAAT-GTTAGAA-GAGCTTGAATCTGCTCAAGAGCGGATTCAAGAACGCATAAGACAGC 467
|| || |||| || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CC-ATGGTTA-AATGAACTTGAATCTGCTCAAGAGCGGATTCAAGAACGCATAAGACAGC 178
Query 468 TTGAAGTGATAGTTTCGAGAATCAGGGAACGAGAAATAACAACAACAACAACACCGGCTT 527
|||||| |||||||| ||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 179 TTGAAGCAATAGTTTCAAGAATCAGGGAACGAGAAATAACTACAACTACAACACCGGCTT 238
Query 528 TGGTGTCGCCTAACGAACATAGAGATTCAACTGCTGGAGTTATACATGAGCGTTCTCGAG 587
||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 239 TGGTGTCGCTTAACGAACATAGAGATTCAACTGCAGGAGTTATACATGAGCGTTCTCGTG 298
Query 588 AGAGACTT-GTCGAAAATGGCGAAAACAAGACTTATTTGATAGCCAAGGCATTGAACATG 646
||||| || |||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 299 AGAGA-TTGGTCGAAAACGGCGAAAACAAGACTTATTTGATAGCAAAGGCATTGAACATG 357
Query 647 GAGAAAACAAGCTCTGTTCCTGGTGGCTTCTTTGACTGCAACATATGTTTAGAGAAAGCT 706
||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 358 GAGAAAACAAGTTCTGTTCCTGGCGGGTTCTTTGACTGCAACATATGTTTAGAGAAAGCT 417
Query 707 GAAGATCCGATTTTGACTTGTTGTGGTCATTTGTTCTGTTGGGGTTGCTTCTATCAGTTG 766
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 418 GAAGATCCGATTTTGACTTCTTGTGGTCATTTGTTCTGCTGGGGTTGCTTCTATCAGTTG 477
Query 767 CCTTTAATTTACTTAAACATAAAGGAATGTCCGGTTTGCGATGGGGAAGTGACTGACGCC 826
||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 478 CCTTTGATTTATTTAAACATAAAGGAATGTCCTGTTTGCGATGGGGAAGTGACTGACACC 537
Query 827 GAGGTGATTCCGATATATGGTAATGGAGATGATTGTGATGGTACTAAACCAAAGTTAGAA 886
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 538 GAGGTGATCCCGATATATGGTAATGGAGATGATTGTGATGGTACTAAACCCAAGTTAGAA 597
Query 887 GA-TTGTGGTATTAGTCTACCTCCAAGGCCTAATGCTAAAAGAGTGGAAAGTGTTCGTCA 945
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 -ACTTGTGGTATTAGTCTACCTCCAAGGCCTAATGCTAAAAGAGTGGAAAGTGTTCGTCA 656
Query 946 AAAGATCATAAACCGAGG-GAACCCTTTCTTCCCTGGGCACGAAAACGAAGCAATCGAAC 1004
||||||||||||||| || || || ||| || ||||||||| |||| |||||||||
Sbjct 657 AAAGATCATAAACCG-GGCGATTCCGTTC--CC-TGGGCACGA---CGAAACAATCGAAC 709
Query 1005 ATATTAGAAGAACTATTGATTCCATAGGACTACAAGCTTTAGCTCAAGGCGATGAGTTTG 1064
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 710 ATATTAGAAGAACTATTGATTCCATAGGACTACAAGCATTAGCTCAAGGCGATGAGTTTG 769
Query 1065 GTTTGACAAACATAATAAACAATGGAGGAGACAATGGTGGacaacaacaacaacaacaac 1124
||||||||||||||||||||||||| ||| | |||||||||||||| ||
Sbjct 770 GTTTGACAAACATAATAAACAATGG---------TGG-G--CAACAACAACAACATCA-- 815
Query 1125 atcatcatcatcatcatcCGCCTTTTGGACCTTTGAGGTTATTGCCACCATATGCTACTT 1184
|||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct 816 -TCATCATCATCATCATCCGCCTTTTGGACCTTTGAGGTTAATGACACCATATGCTGCTT 874
Query 1185 TCCCAGGTCTTCTAGTTGATACCTCAGACATACCAGCACCCTTTGATGATGATGCTTTTG 1244
||||||||||| |||||||||||||||||||||| || | ||||||||||||||||| |
Sbjct 875 TCCCAGGTCTTGTAGTTGATACCTCAGACATACC-GC-CT-TTTGATGATGATGCTTTCG 931
Query 1245 ATGTTGATAGTTTTGTTGACACAACTAGTTTGAGAAGAAACCGTAGAAGACCTTCACCAG 1304
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 932 ATGTTGATAGTTTTGTTGACACAACTAGTTTGAGAAGAAACCGTCGAAGACCTTCACCAG 991
Query 1305 CCGTACGAGCTTCTTATCAGAGAAACCGAAGTAACAATGCTTCTCAAACGATTTCGTTCA 1364
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 992 CCGTACGAGCTTCTTATCAGAGAAACCGAACTAACAATGCTTCTCAGACGATTTCGTTCA 1051
Query 1365 GGCTCGGTTCTTCAGCTTCATCAGCACCTAGAGAGTTTGCTGTTCCAAGCTCCTCCATTA 1424
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1052 GGCTCGGTTCTTCAGCTTCATCAGCACCTAGAGAGTTTGCTGTTCCGAGCTCCTCCATTA 1111
Query 1425 TGACGAGAAGCCAAACTGTAAACCCTACTGAAGTGGTTACTTCGAGTACTTCAGCTTCAT 1484
||||||||||||||||||||| ||||||||||||||||||| | |||| || |||||||
Sbjct 1112 CGACGAGAAGCCAAACTGTAAATCCTACTGAAGTGGTTACTTTGGGTACATCCGCTTCAT 1171
Query 1485 CGTCTAGGAGAAGAACAGAAGATGTAAACAATGGACCTCGGACCAGGTCTAGAAGGAGGC 1544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1172 CGTCTAGGAGAAGAACAGAAGATGTAAACAATGGACCTCGGACCAGGTCTAGAAGGAGGC 1231
Query 1545 TGAGGTAAAAAGGAAAAACGGTCGCCGGAAT 1575
|||||||| | |||| || ||||||||||
Sbjct 1232 TGAGGTAACT-GTAAAATCG-TCGCCGGAAT 1260
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66581748260
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5