BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44420.1
Length=1356
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935376 jgi|Araly1|935376|scaffold_403364.1 1652 0.0
> Ahg935376 jgi|Araly1|935376|scaffold_403364.1
Length=1091
Score = 1652 bits (894), Expect = 0.0
Identities = 1017/1077 (94%), Gaps = 5/1077 (0%)
Strand=Plus/Plus
Query 74 TTGAACTATCTCGCCGGCGATAATGATCTACGTTGGTGGAGTGCAATTTCTAGACGAGAG 133
||||||| |||||||||||||||||||||||||||||||||||| | ||| ||| ||||
Sbjct 1 TTGAACTCTCTCGCCGGCGATAATGATCTACGTTGGTGGAGTGCCAGTTCGAGATGAGAA 60
Query 134 TAGCTCTTTTTCATTGTCTTCTTCATCGCAGGGAAGTAGCTTGCTTGTTGATGTAATGAG 193
|||||| | ||| |||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 61 TAGCTCATCTTCCTTGTCTTCTTCATCTCAGGGAAGTAGCTTGCTTCTTGATGTAATGAG 120
Query 194 TCATCCTGTGATAACGTTAGCTTCTGATTCCTTTAAGAATCTTGAGGAAAAGAATGTTTC 253
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 121 TCATCCTGTGATAACGTTAGCTTCTGATTCTTTTAAGAATCTTGAGGAAAAGAATGTTTC 180
Query 254 TTTCGATGAAAGTGATTCAGAGAGCTCAACAAAAGACAGATATGTTTACATATTCCAAAG 313
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTTTGATGAAAGTGATTCAGAGAGCTCAACAAAAGACAGATATGTTTACATATTCCAAAG 240
Query 314 AGAATTTGCTGTTGTGAATCCAGCTCTTGTTGATTTTGTTGGCACCGATGAAGCAACAAC 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGAATTTGCTGTTGTGAATCCAGCTCTTGTTGATTTTGTTGGCACCGATGAAGCAACAAC 300
Query 374 TTGTGTAGGCCTTGTTATCCGCAACAGAAAATCTGGAATGACGTCTGTTGCACACATGGA 433
||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 301 TTGCGTAGGCCTTGTTATCCGCAACAGAAAATCTGGAATGACGTCTGTTGCGCATATGGA 360
Query 434 TTCGCCAGAGATTGTGGATTTGGGGATAAGCCAGATGTTGTTATTGGTTTTACAGGATGA 493
||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||
Sbjct 361 TTCGCCAGAGATTGTGGATTTGGGGATAAGCCAGATGTTATCATTGGTTTTAGAGGATGA 420
Query 494 CGTAGATGCCGAGTTAGATGTACATATGGTTGGTGGTTATGAAGATGTCGACATAAAAAA 553
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 421 CGTAGATGCCGAGTTAGATGTACATATGGTTGGTGGTTATGAAGATGTAGACATAAAAAA 480
Query 554 TGCTGATGGT-GT--TGGTGACTATGCCAAACCAGAGGGTTATTCATTTCCGTTGTGTTG 610
|||||||||| || ||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 481 TGCTGATGGTAGTGGTGGTGACTATGCCAAACCAGAGGGTTACTCATTTCCTTTGTGTTG 540
Query 611 CAAATTAGTAGAAACTTTGCAGAAGAGAAGAGAAAACTTTCACATTCAAACCCTCTTTAT 670
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 541 CAAATTAGTAGAAACTTTGCAGAAGAGAAGAGAATACTTTCACATTCAAACCCTCTTTAT 600
Query 671 TCTTGGGCACAATACCAAGTTGGATTCACAAGCAAACACGTGCCCCATTTTTAATGGATG 730
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 601 TCTTGGGCACAATACCAAGTTGGATGCACAAGCGAACACGTGCCCCATTTTTAATGGATG 660
Query 731 CCTGGTGAATACCAGCACCGGTGCAATCTTGCCAGCCAGTTTCAACAGAACATCTAGATG 790
||||||||||||| |||||||||||| || |||||||||||| ||||||||||||||||
Sbjct 661 CCTGGTGAATACCTCCACCGGTGCAATTTTCCCAGCCAGTTTCGACAGAACATCTAGATG 720
Query 791 TCCGGATGAGATCGTTAGAAGAATTCGAGTTTCATCATCGTTTGAAGATTCTAGCTGGAA 850
|||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 721 TCCGGATGAGATTGTTAGAAGAATTCGAGTTTCATCATCATTTTTAGATTCTAGCTGGAA 780
Query 851 GGGAAAGTTACTTGACACATATGACACAAAAACTGATAGATTCATCATCGCACCATGCCG 910
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 781 GGGAAAGTTACTCGACACATATGACACAAAAACTGATAGATTCATCATTGCACCATGCCG 840
Query 911 CTGGACAATGCGCTTGATTGAATATGTTTGGGAACTTAATCAGCTTACTGATGAAGAAAT 970
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 841 CTGGACAATGCGCTTGGTTGAATATGTTTGGGAACTTAATCAGCTTTCTGATGAAGAAAT 900
Query 971 CCTCACTAACTGTTCCACCTCACCTTCTGCTGAAGGTCCAGACTTCGTAAACAGTTTAAG 1030
|||||| || ||||| || |||||||||||||||||||||||||||||| ||| || |||
Sbjct 901 CCTCACAAATTGTTCTACGTCACCTTCTGCTGAAGGTCCAGACTTCGTAGACAATTCAAG 960
Query 1031 AAGGAATTGGG-GATATTTACTGAAATATCCAGAATGGAGCAAAACATTCCCAAGGAGGC 1089
||||| ||||| | |||||||| ||| ||||||| ||||||||||| ||||||| || |
Sbjct 961 AAGGATTTGGGAG-TATTTACTCAAACATCCAGATTGGAGCAAAACCTTCCCAAAAAGAC 1019
Query 1090 AACCACGTGTGTTTGAAAGAACTGTCGATGGACACTGGAAAAAATGCTGACTTTCTC 1146
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1020 AACCACGCGTGTTTGAAAGGACTGTCGATGGACACTGGAAAAAATGCTGACTTTCTC 1076
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50741602527
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5