BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44430.1
Length=2196
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483567 jgi|Araly1|483567|fgenesh2_kg.4__2627__AT2G44430.1 3188 0.0
Ahg939046 jgi|Araly1|939046|scaffold_503237.1 276 6e-73
> Ahg483567 jgi|Araly1|483567|fgenesh2_kg.4__2627__AT2G44430.1
Length=2210
Score = 3188 bits (1726), Expect = 0.0
Identities = 2065/2224 (93%), Gaps = 42/2224 (2%)
Strand=Plus/Plus
Query 1 GAGCGTTTTTGTTTGTgagagagaagaagagagagacgagtctgtatggcaaaaggatga 60
||||||||||||||||| ||||| | ||||||||||||||||||||||| ||||||||||
Sbjct 1 GAGCGTTTTTGTTTGTGTGAGAG-A-AAGAGAGAGACGAGTCTGTATGGAAAAAGGATGA 58
Query 61 ggaaggaagaagaagaagaagCAGGATCTTATAACATGAACGTCGACGATACTAACAACA 120
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 59 GGAAGGAAGAAGAAGAAGAAGCACGATCTTATAACATGAACGTCGACGATACTAAC-AC- 116
Query 121 ACAACAACTATATCTGCACTGATAATGATTACATCGAAGAAGATGAAGATAATAGCAACA 180
|||||| ||||| ||||||||||||||||||||||||||| |||||||| ||| |||||
Sbjct 117 -CAACAAGTATATTTGCACTGATAATGATTACATCGAAGAACATGAAGATGATAACAACA 175
Query 181 CTAAGAAGAGCCAAACACAAGCATGGGGCACGTGGGAAGAGCTGTTATTAGCATGCGCCG 240
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 GTAAGAAGAGCCAAGCACAAGCATGGGGCACGTGGGAAGAGCTGTTATTAGCATGCGCCG 235
Query 241 TTAAACGACACGGATTTGGTGATTGGGATTCCGTCGCTACGGAGGTTCGATCCCGGAGCT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 TTAAACGACACGGATTTGGTGATTGGGATTCCGTCGCTACGGAGGTTCGATCCCGGAGCT 295
Query 301 CTCTCTCTCACCTCCTCGCTTCCGCTAATGATTGTAGGCACAAGTATCGAGATCTCAAGC 360
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 CTCTCTCCCACCTCCTCGCTTCCGCTAATGATTGTAGGCACAAGTATCGAGATCTCAAGC 355
Query 361 GTCGATTTCACGAACAAGAAAAAACAGATGTGACGGCGACGGTGgaagaag-aagaagaa 419
|||||||||| ||||||| |||||| |||| | | ||||||| | | | | ||||||||
Sbjct 356 GTCGATTTCAGGAACAAGCAAAAACCGATGCGGCTGCGACGGCG-ACGGTGGAAGAAGAA 414
Query 420 gaagaagagagaGTTGGTAATAATATCCCGTGGCTTGAACAGCTACGTAACCTTCGTGTA 479
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 415 GAAGAAGAGAGAGTCGGTAATAATATCCCTTGGCTTGAACAGCTACGTAACCTTCGTGTA 474
Query 480 GCTGAGCTCCGTCGTGAAGTTGAGCGTTATGATTGTTCGATACTATCGCTTCAATTGAAA 539
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 475 GCTGAGCTCCGTCGTGAAGTTGAGCGATATGATTGTTCGATACTATCGCTTCAATTGAAG 534
Query 540 GTTaagaaattagaggaggagagagaagtcggagaagagaaaccagatctggaaaacgag 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 535 GTTAAGAAATTAGAGGAGGAGAGAGAAGTCGGAGAAGAGAAACCAGATCTGGAAGATGAG 594
Query 600 aggaaagaagagagatcggagaaCGATGGTTCTGAATCTGAGCACCGTGAAAAGGCGGT- 658
|||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||
Sbjct 595 AGGAAAGAAGAGAGATCGGAGAACGACGGTTCTGAATCCGAGCACCGTGGAAAGGCGGTG 654
Query 659 -TT-CAGCGGCGGAGGAATCTGATCGGGAAAATAGGTCGATGAACGAGTCCAACTCGACA 716
|| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 655 GTTTCAGCGGCGGAGGAATCTGATCGGGAAAACAGGTCGATGAACGAGTCGAACTCGACA 714
Query 717 GCAACCGCCGGAGAAGAAGAGAGAGTTTGCGGAGACGAACCGAGTCAAACTCGAGAAGAT 776
| ||||| ||||||||| ||||||||| ||||||| ||||||||||| |||||||| |||
Sbjct 715 GAAACCGTCGGAGAAGACGAGAGAGTTGGCGGAGATGAACCGAGTCAGACTCGAGATGAT 774
Query 777 GATTCCGGTAATGATAAGAAT---CCGGATCCTGATCCGGTTAACAAGGATGCGACGGCT 833
|| || ||||||||||| ||| |||||||||||||||||| | || |||||| ||||
Sbjct 775 GACTCGGGTAATGATAATAATAATCCGGATCCTGATCCGGTTTATAACGATGCGGCGGCG 834
Query 834 GCGG---AGGAGGAGGAAGGATCGGTTAGTAGAGGATCGGAAGCGAGTCACTCAGACGAG 890
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 GCGGTGGAGGAGGAGGAAGGATCGGTTAGTAGAGGATCGGAAGCGAGTCACTCAGACGAG 894
Query 891 TTAGGCGAGTCAGGGACATCGGAAA-GTAAATGGAAACGGAAACGAAGGAAACAGGGTGG 949
||||||||||||||||| ||||||| | ||||||||||||||||| ||||||||||||||
Sbjct 895 TTAGGCGAGTCAGGGACGTCGGAAACG-AAATGGAAACGGAAACGTAGGAAACAGGGTGG 953
Query 950 TGCCGGCGAGATCAGATCGGCTGAGAGTAAATCACAGCCGTTGATTAGTCTTCTTGATCT 1009
| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 954 TTCCGGCGACATCAGATCGGCTGAGAGTAAATCACAGCCGTTGATTGGTCTTCTTGATCT 1013
Query 1010 GATTCGGTCCCATCCGCGTGGATCTTTGTTCGAACGCCGGCTTCGGAGCCAGGAGGCTAA 1069
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 GATTCGGTCCCATCCGCGTGGATCTTTGTTCGAACGCCGGCTTCGGAGCCAGGAGGCTAA 1073
Query 1070 GGATTACAAGAGCATGGTTAAGCAACATTTGGACATTGAGACAATACAGAGAAAGTTGAA 1129
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1074 GGATTACAAGAGCATGATTAAGCAACATTTGGACATTGAGACGATACAGAGAAAGTTGAA 1133
Query 1130 GCAAGGATCTTATGATTCTTCAAGCCTCATTTTTTACAGAGATCTACAGCTTCTCTTCAC 1189
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1134 GCAAGGATCTTATGATTCTTCAAGCCTCACTTTTTACAGAGATCTACAGCTTCTCTTCAC 1193
Query 1190 AAACGCAATTGTCTTCTTTCCTTTATCTTCCTCAGAATCGATGGCAGCTCACGAACTACG 1249
|||||| ||||| || ||||||||||||||||||||||| ||||| |||||||||||| |
Sbjct 1194 AAACGCCATTGTGTTTTTTCCTTTATCTTCCTCAGAATCAATGGCCGCTCACGAACTAAG 1253
Query 1250 AGCTGTTGTTTCTCAAGAAATGAGAAAAGAGACCGGAAAAGCTGGCCCCAGGTTAATAAA 1309
||| |||||||||||||||| || ||||| |||||||||||||| ||||||||||||||
Sbjct 1254 AGCCATTGTTTCTCAAGAAATAAGGAAAGATACCGGAAAAGCTGGTCCCAGGTTAATAAA 1313
Query 1310 ACAGGAAGCATCCGGTATGCGTAGTGGCAAAGCGGATGCTGAAACATCAGACTCGTCTCT 1369
| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1314 CCGGGAAGCATCGGGTATGCGTAGTGGCAAAGCGGATGCTGAGACATCAGACTCGTCTCT 1373
Query 1370 CTCTAGGCAGAAATCTTCAGG-TCCTCTTGTCGTTTGTAAGAAGAGGCGTTCTGTTTCCG 1428
|||||| ||||||||||| || | | || || ||||||||||||||| |||||||| |||
Sbjct 1374 CTCTAGACAGAAATCTTC-GGCTACACTAGTTGTTTGTAAGAAGAGGAGTTCTGTTACCG 1432
Query 1429 CTAAGGCTTCTCCTTCGTCATCAAGCTTTAGCCAAAAAGATGATACGAAAGAAGAGACAT 1488
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1433 CTAAGGCTTCTCCTTCGTCATCAAGCTTTAGCCAAAAAGAGGAGACGAAAGAAGAGACAT 1492
Query 1489 TATCAGAGGAAAAAGACAACATTGCGACTGGTGTAAGAAGCTCGAGAAGGGCAAACAAAG 1548
|||||||||| |||||||||| || ||||||||||||||||||||||||||| |||||||
Sbjct 1493 TATCAGAGGAGAAAGACAACACTGTGACTGGTGTAAGAAGCTCGAGAAGGGCCAACAAAG 1552
Query 1549 TGG---CTGC-G--G---TTGTCGCTAATAATACCAAGACGGGCAAAGGCAGGAACAAAC 1599
||| |||| | | ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1553 TGGTTGCTGCTGCTGCGGTTGTCGCTAATAATACCAAGACGGGCAAAGGCAAGAACAAAC 1612
Query 1600 AGAAACAGACAGAGTCGAAAACAAATTCGTCGAATGATAATAGTAGTAAACAAGACACAG 1659
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 1613 AGAAACAGACAGAGTCGAAAACAAATTCGTTGAATGATAATAGTAGTAAACAAGATACAG 1672
Query 1660 GTAAAACAGAGAAGAAAACGGTTTCAGCAGATAAAAAGAAGAGTGTGGCTGATTTCTTGA 1719
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 1673 GTAAAACAGAGAAGAAAACGGTTTCATCAGATAAGAAGAAGAGTGTGGCTGATTTCTTGA 1732
Query 1720 AGAGATTAAAGAAGAACTCTCCGCAAAAAGAAGCTAAAGATCAGAATAAGAGCGGTGGAA 1779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1733 AGAGATTAAAGAAGAACTCTCCGCAAAAAGAAGCTAAAGATCAGAATAAGAGCGGTGGAA 1792
Query 1780 ATGTTAAGAAAGATAGTAAAACAAAACCAAGAGAACTTAGAAGTAGCAGTGTGGGTAAAA 1839
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1793 ATGGTAAGAAAGATAGTAAAACAAAACCAAGAGAACTTAGAAGTAGCAGTGTGGGTAAAA 1852
Query 1840 AGAAGGCCGAGGTAGAGAATACTCCGGTGAAAAGAGCCCCCGGGAGACCGCAGAAGAAAA 1899
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 1853 AGAAGGCCGAGGTAGAGAATGCTCCGGTGAAAAGAGCCCCTGGGAGACCGCAGAAGAAAA 1912
Query 1900 CAGCAGAGGCAACTGCATCTGCCTCAGGAAAACGGGGTAGGGATACAGGAAGCACGGGGA 1959
|||||||| |||| ||||||||||| |||||||||||||| ||||| ||||||||||| |
Sbjct 1913 CAGCAGAGTCAACCGCATCTGCCTCGGGAAAACGGGGTAGAGATACCGGAAGCACGGGAA 1972
Query 1960 AGGACAATAAACAGCCAAAGAAAAGAATCAGAAAATGACAATTCAAAACATGTTT-GCCC 2018
|||||||||||||||||||||||||||||||||||||| |||| |||||| ||| ||||
Sbjct 1973 AGGACAATAAACAGCCAAAGAAAAGAATCAGAAAATGAGAATTGAAAACACCTTTTGCCC 2032
Query 2019 CTTTAGTGGCATT-TCTTAAGAGCTCAAGTTATTGTATATGCTTTGGAGttttttttttA 2077
|||| ||| | || |||||||||| || | || ||||||||||||||||| |||| |
Sbjct 2033 CTTTGGTGTC-TTCTCTTAAGAGCACAGGGTACTGTATATGCTTTGGAGTATTTT----A 2087
Query 2078 ATCTTAATTCTAACATTAGAAGTCCTATTCTCATAGTTATGG-AT---T-AGAGAAAGTG 2132
|||||||||||||| ||| ||| ||||||||||||||||| || | || |||||||
Sbjct 2088 -TCTTAATTCTAACACTAGGGGTCATATTCTCATAGTTATGGTATGGATTAGGGAAAGTG 2146
Query 2133 TATTTTGGCTTGCTGTCATCAGTAATATTCATTCCTTCTTTTCTGTTATATTTTGCTCAT 2192
|||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2147 TATTTTTGCTTGCTGGCATCAGTAATATTCATTCCTTCTTTTCTATTATATTTTGCTCAT 2206
Query 2193 TTCC 2196
||||
Sbjct 2207 TTCC 2210
> Ahg939046 jgi|Araly1|939046|scaffold_503237.1
Length=1973
Score = 276 bits (149), Expect = 6e-73
Identities = 409/527 (78%), Gaps = 48/527 (9%)
Strand=Plus/Plus
Query 795 AATCCGGATCCTGATCCGGTTAACAAGGATGCGACGGCTGC-GGAGGAGGAGGAAGG-AT 852
||||| ||||| ||||||||||| |||| | | |||| || ||||||||| ||| | |
Sbjct 726 AATCCAGATCCCGATCCGGTTAATAAGGC-G-G-CGGC-GCCGGAGGAGGAAGAACGCA- 780
Query 853 CGGTTAGTAGAGGATCGGAAGCGAGTCACTCAGACGAGTTAGGC-GAGTCAGGGA-CATC 910
||||||||| | |||||||| |||| |||| | |||||| || || || |||| | ||
Sbjct 781 CGGTTAGTAAAAGATCGGAAATGAGTAACTCGGGCGAGTT-GGATGAATC-GGGAACGTC 838
Query 911 GGAAAG-TAAATGGAAAC-GGAAACGA-AGGAA-ACAG--G-GT-GGTGCCGGCGA-GAT 961
| | | |||||| ||||| || || || |||| | | || | ||||| |||
Sbjct 839 C-ACTGGTCC-TGGAAAGAGGAAAGGACAGAAATACAGAAGCGGCGGAGGCGGCGGTGAT 896
Query 962 --CAGATCGGCTGA-GAGTAAATCACAGCCGTTGATTAG-TCTTC-TTGATCTGATTCGG 1016
|| |||||| | || |||||||||||||||||| || | | | || | || ||||||
Sbjct 897 ATCAAATCGGCCGGTGA-TAAATCACAGCCGTTGAT-AGATAT-CATTAAGCTAATTCGG 953
Query 1017 TCCCATCCGCGTGGATCTTTGTTCGAA-CGCCGGCTTCGGAGCCAGGAGGCTAAGGATTA 1075
|| ||||| ||||| || |||||||| | ||||||| ||||||||||| | ||||||||
Sbjct 954 TCTCATCCCCGTGGTTCCGTGTTCGAATC-CCGGCTTAGGAGCCAGGAGACAAAGGATTA 1012
Query 1076 CAAGAGCATGGTTAAG-CAACATTTGGACATTGAGACAATACAGA-GAA-AGTTGAAGCA 1132
|||||| || | ||| || ||||||||||| |||||||| ||| ||| | |||| | |
Sbjct 1013 CAAGAGGTTGAT-AAGGCAGCATTTGGACATCAAGACAATAGAGAAGAAGA-TTGA-GAA 1069
Query 1133 AGGATCTTATGATTCTTCAAGCCTCATT-TTT-TACAGAGATCTACA-GCTTCTCTTCAC 1189
||||||||||| |||||||||||| || ||| |||||||| || || ||||||||||||
Sbjct 1070 AGGATCTTATGTTTCTTCAAGCCT--TTCTTTCTACAGAGACCT-CAAGCTTCTCTTCAC 1126
Query 1190 AAACGCAATTGTCTTCTTTCCTTTATCTTCCTCAGAATCGATGGCAGCTCACGAACTACG 1249
|||||| ||||||||||||||| ||||||||||||||| ||||| ||||| || ||| |
Sbjct 1127 AAACGCCATTGTCTTCTTTCCTACATCTTCCTCAGAATCCATGGCTGCTCAAGAGCTAAG 1186
Query 1250 AGCTGTTGTTTCTCAA-GAAATGA-GAAAAGAGACCGGAAAAGCTGG 1294
| | | || ||| || || |||| |||| || || |||||| ||||
Sbjct 1187 AACCCTCGTCTCT-AACGAGATGAAGAAACGA-ACGGGAAAATCTGG 1231
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82655831650
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5