BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44440.1
Length=1775
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483568 jgi|Araly1|483568|fgenesh2_kg.4__2628__AT2G44440.1 2302 0.0
> Ahg483568 jgi|Araly1|483568|fgenesh2_kg.4__2628__AT2G44440.1
Length=1738
Score = 2302 bits (1246), Expect = 0.0
Identities = 1625/1795 (91%), Gaps = 77/1795 (4%)
Strand=Plus/Plus
Query 1 GGCAAATAATGAGCTTTAGGCAAAATCTGTAATCTTTTAAGCTGAATCACTTATAGTGAA 60
||||||||||||||||| |||||||||||||||| | ||||||||||||||| | ||| |
Sbjct 1 GGCAAATAATGAGCTTTCGGCAAAATCTGTAATC-TCTAAGCTGAATCACTTGTTGTGGA 59
Query 61 GCTCAGATTTGTTACCGGAGCAAGAAATTGATCCGTCGCTTCTTTCTTATAGCAGCTCGA 120
|||| |||||||| |||||||||||| ||||||||||||||||||| | |
Sbjct 60 GCTCTGATTTGTTGCCGGAGCAAGAATTTGATCCGTCGCTTCTTTC---T------T--- 107
Query 121 CAAAGTACAAAATTGAGCTCAAAACCAAAAATCGAGTCCTCTTCTAAGTCAAATTGAAAT 180
|||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||
Sbjct 108 --AAGTACAAAATTGAGCTC-AAACC-AAAATCGAGTCTTCTTCTAAGTCAAATTGAAAT 163
Query 181 CAACCTTG-GCAAATTGTGCTTGATTCTTCGTCTAGCTTCTCCAATTTTCATCTTCGAGA 239
|||||| | |||| |||| ||||||||||||||| ||||||||||||| || ||||||||
Sbjct 164 CAACCTCGCGCAA-TTGTTCTTGATTCTTCGTCTTGCTTCTCCAATTT-CACCTTCGAGA 221
Query 240 TTCGTCTCTTGATTTAAGCTTCGTCATGGACTGCAAATCG-TCTGATAGCAGTGGAACTG 298
|| ||||||||||| ||||||||| ||||||| | || | | |||||||||||||||||
Sbjct 222 TTAGTCTCTTGATTAAAGCTTCGT-ATGGACTACGAACCAAT-TGATAGCAGTGGAACTG 279
Query 299 ATGATGATCTGCCACCGTCGCATAGAGTTCCACgaggaggaggaggaggaagaggaggaC 358
||||||||||||||||||| | | ||||||||||| | | | | |
Sbjct 280 ATGATGATCTGCCACCGTC--A-------C---GAGGAGGAGGACGTGT--G-G-----C 319
Query 359 GCGTGGCTGGTAATGGAAGACCTTTGAATCTTCCGCCATCTTACCCAAAGATGTATGATG 418
|| || ||||||||| ||||||||||||| |||||||| |||||||| |||||||
Sbjct 320 ---TG-CT---AATGGAAGATCTTTGAATCTTCCTCCATCTTATCCAAAGATATATGATG 372
Query 419 ATCTTGCTGCGGATATGGAAGCTCAGATTCACCAGATTGAGAAGGAAGCATATATCTCTG 478
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 373 ATGTTGCTGCTGATATGGAAGCTCAGATTCACCAGATTGAGAAGGAAGCATATATCTCTG 432
Query 479 TTTTAAGAGCCTTTAAAGCCCAAGGAGATGCTATTTCATGGGAAAAAGAAAGTGTCATAA 538
|| |||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||
Sbjct 433 TTCTAAGAGCCTTTAAAGCTCAAGGAGATGCTATTTCATGGGAAAAAGAAGGTGTAATAA 492
Query 539 CTGAATTACGTAAAGAGTTGAGTTTATCGAATGAGGAGCATAGAGAGCTTCTAGGCCGTG 598
|||| |||||| ||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 493 CTGAGCTACGTAGAGAGTTGAGTTTATCGAATGAGGAGCATAGAGAACTTCTAGGTCGTG 552
Query 599 TTAACTCAGATGATACAATACGAAGGATAAGGGAATGGAGACAATCTGGAGGAATGCAGC 658
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 553 TTAACGCAGATGATACAATACGAAGGATAAGGGAATGGAGACAATCTGGAGGAATGCAAC 612
Query 659 CAAGTATGCGCAATGCTGCTCAAGTGGTTCACGATACATTGCCAAGCCCTTCTGTTTCAG 718
||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| |||
Sbjct 613 CAAGTGTGCGCAATGCTGCTCAAGTGGTTAACGATACATTGCCAAGCACTTCTGTTCCAG 672
Query 719 CTTCTATGAAGACGCACAAACCAAACCAGCCAATTCCTTCTCAACCATTCGCTAGTTCTT 778
||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 673 CTTCTATTAAGAAGCACAAACCAAACCAGCCAATTCCTGCTCAACCATTCGCTAGTTCTT 732
Query 779 CACCTTCTTTTCATCCTCAAGCTGATCCCACTCACCCGTTTGCTTCATCGACAGCTAAAC 838
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||
Sbjct 733 CACCTTCTTTTCATCCTCAAGCTGATCCCACTCACCCATTTGCTTCATCCACAGCCAAAC 792
Query 839 GAGGACCTGTTCCTATTGTCAAGGGCAAAAAACACAAACCAGTTTTTCCTGGCTCGTCTT 898
| ||| ||||||||||||||||||||||||| || ||||||||||||||||| |||||||
Sbjct 793 GGGGAGCTGTTCCTATTGTCAAGGGCAAAAAGCATAAACCAGTTTTTCCTGGTTCGTCTT 852
Query 899 CCACAAAACATGCCCCATACCATCCTTCAGATCAACCTCCACGAGGACAAGTCATGAACA 958
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 853 CCACAAAACCCGTCCCATACCATCCTTCAGATCAACCTCCACGAGGACAAGTCATGAACA 912
Query 959 GATTACCA-TCTGTTCCTGCCAGTTCAAGTGAACCCACAAACGGAATCGATCCTGAATCT 1017
|||||||| | ||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 913 GATTACCAAT-TGTTCCTACCAGTTCAAGTGAACCCACAAACGGAACCGATCCTGAATCT 971
Query 1018 TTT-TTAGG-AAGAAGAGTTAGAACAAAGTGGCCTGAGGACAATACATTTTACGACGCTA 1075
||| || || || |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 972 TTTATT-GGCAA-AAGAGTTAGAACAAAGTGGCCTGAAGACAATACATTTTACGACGCTG 1029
Query 1076 TCATTACCCA-GTATAATCCAGTTGAGGGTCGTCATGCTTTAGTTTATGACATTGCAACA 1134
|||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1030 TCATTACC-ATGTATAATCCAGTTGAGGGTCGCCATGCTTTAGTTTATGACATTGCAACA 1088
Query 1135 CCTTC-TGAGACATGGGAATGGGTTAGA-CTCTCAGAGATATCTCCTGGGGATATAGAGT 1192
|| | |||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1089 GCT-CATGAGACATGGGAATGGGTTA-ATCTCTCAGAGATATCTCCTGGGGATATAGAGT 1146
Query 1193 GGATAGGAGAGGATCCTGGGCTTGGTAATCGATATA---AT---GGACAAGGTCATGGAC 1246
|||||||||||||||||||| |||||||||||||| || ||||||||||||| ||
Sbjct 1147 GGATAGGAGAGGATCCTGGGGTTGGTAATCGATATGGTTATAACGGACAAGGTCATGAAC 1206
Query 1247 TGAATAGAACTACCGGACCCAACTGTGTTCCACAACGAGGAAGCGGTTTGG-AGAAGAAC 1305
| ||||||||||||||||||||| || |||||||||||||||||||||||| | ||||||
Sbjct 1207 TAAATAGAACTACCGGACCCAACAGTATTCCACAACGAGGAAGCGGTTTGGCA-AAGAAC 1265
Query 1306 ACTATCAGAAAGGGTTTCAGAACATCACAGAATGGAACTGGAAAAAAGAAACATCTCGAT 1365
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 1266 ACTATCAGAAAGGATTTCAGAACATCACAGAATGGAACTGGGAAAAAGAAACATCTCAAT 1325
Query 1366 ATACGAATCCGCCAAACAGATGTCCTAATCAGAGAGGTGGAGAGAGTTCTTCGTTCACAC 1425
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1326 ATACGAATCCGCCAAACAAATGTCCTAATCAGAGAGGTGGAGAGAGTTCTTGGTTCACAC 1385
Query 1426 AATCCAGATCCTTACGAAGTTGAAAGGGCTAAGAGAGTTTTGGAGGAGCACGAGCATGCA 1485
||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 1386 AATCCAGATCCCCACGAAGTTGAAAGGGCTAGGAGAATTTTGGAGGAGCACGAGCATGCA 1445
Query 1486 CTTGTGGGCGCAATTGCAAAGCTTGGAGATATTTCCGATGGAGAAAACG--AA--GGTGC 1541
||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||
Sbjct 1446 CTTGTGGGCGCAATTGCAAAGCTTGGAAATATTTCCGATGGAGAAAACGGCAAAAGGTGC 1505
Query 1542 ATTTCGTCGGTAGCTTATGTTTGAATCAAGCAATTTTGCCAAGGCACAGTGCAATGTGTG 1601
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1506 ATTTCGTCAGTAGCTTATGTTTGAATCAAGCAATTTTGCCAAGGCACAGTGCAATGTGCG 1565
Query 1602 GTCCATGAGGAGTCAGTGAAGAAGAGATCGAAGGTCAGAGTCTCAACTTCTTTGATGTTA 1661
|||||||||||| | |||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 1566 GTCCATGAGGAGCCGGTGAAGAAGAGATCGAAGGTCAAAGTCTCACCTTCTTTGATGTTA 1625
Query 1662 CCCTTTTCTTGGGTATCTGACTGTAATTTTT-GCTGACACTAGAGATTAGCTCAACCTGG 1720
||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1626 CCCTTTTTTTGGGTATCTGACTGTAATTTTTTGCTGACACTAGAGATTAGCTTGACCTGG 1685
Query 1721 ATCTCCGTTTTGTTGGATATATATGTTCAATGGAATAGTTTGGGTATATTGTCAC 1775
|||| |||||||||||||||| |||||||||| |||||| ||||| |||||||
Sbjct 1686 ATCTTGGTTTTGTTGGATATAT--GTTCAATGGAGTAGTTTCGGTATCTTGTCAC 1738
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66619838505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5