BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44450.1
Length=1671
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935380 jgi|Araly1|935380|scaffold_403368.1 2490 0.0
Ahg494520 jgi|Araly1|494520|fgenesh2_kg.8__336__AT5G44640.1 1736 0.0
Ahg481414 jgi|Araly1|481414|fgenesh2_kg.4__474__AT2G25630.1 647 0.0
> Ahg935380 jgi|Araly1|935380|scaffold_403368.1
Length=1566
Score = 2490 bits (1348), Expect = 0.0
Identities = 1502/1575 (95%), Gaps = 15/1575 (1%)
Strand=Plus/Plus
Query 25 TCATAAAGAAGAAAA-CTAAGAATGAGAGGTAATTATCTTTCTTTGCTAGTAGTGCTCAT 83
|||| ||||| |||| ||||||||| |||| || |||| ||||||||||||||||||||
Sbjct 1 TCAT-AAGAAAAAAATTTAAGAATGAAAGGTGATCATCTCTCTTTGCTAGTAGTGCTCAT 59
Query 84 TGTCTTGGCCTCCAATGATGTTCTTGCCAACAACAACTCTTCAACACCTAAATTAAGAAG 143
||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||
Sbjct 60 TGTCTTGGCCTCCAACGAAGTTCTTGCCAACAACAACTCTTCAACACCTAAATTACGAAG 119
Query 144 AAGTGATTTTCCTGAAGATTTCATTTTTGGATCTGCAACATCTGCTTACCAGGTCGAAGG 203
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 120 AAGTGATTTTCCTGAAGATTTCATTTTTGGGTCTGCAACCTCTGCTTACCAGGTCGAAGG 179
Query 204 AGGTGCTCATGAAGATGGTAGAGGACCTAGTATCTGGGATACCTTCTCTGAGAAATATCC 263
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 180 AGCTGCTCATGAAGATGGTAGAGGACCAAGTATCTGGGATACCTTCTCTGAGAAATACCC 239
Query 264 AGAGAAGATAAAGGATGGTAGCAATGGGTCTGTTGCAGATAACTCTTACCATCTTTACAA 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AGAGAAGATAAAGGATGGTAGCAATGGGTCTGTTGCAGATAACTCTTACCATCTTTACAA 299
Query 324 GGAAGATGTGGCGTTATTGCATCAAATTGGGTTTAATGCATACAGATTCTCAATCTCATG 383
|||||||||||| || |||||||||||||| || ||||||||||||||||||||||||||
Sbjct 300 GGAAGATGTGGCTTTGTTGCATCAAATTGGATTCAATGCATACAGATTCTCAATCTCATG 359
Query 384 GTCGAGGATCTTGCCTCGTGGGAATCTAAAAGGAGGAATCAACCAGGCTGGTATTGACTA 443
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 360 GTCGAGGATCTTGCCTCGTGGGAATCTAAGAGGAGGAATCAACCAGGCTGGTATTGACTA 419
Query 444 TTACAACAACTTGATCAATGAACTTTTGTCCAAAGGAATTAAGCCTTTTGCAACCATGTT 503
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 420 TTACAACAACTTGATCAATGCGCTTTTGTCCAAAGGAATTAAGCCTTTTGCAACCATGTT 479
Query 504 CCATTGGGACACACCACAAGCCCTTGAAGATGCTTATGGTGGATTCCGTGGTGCCGAGAT 563
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 480 CCATTGGGACACACCACAAGCCCTTGAAGATGCTTATGGCGGATTCCGTGGTGCCGAGAT 539
Query 564 TGTGAACGATTTCCGCGATTATGCGGATATTTGCTTCAAGAATTTTGGAGATAGAGTGAA 623
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 540 TGTGAACGATTTCCGGGATTATGCGGATATTTGCTTCAAGAGTTTTGGAGATAGAGTGAA 599
Query 624 GCATTGGATGACATTGAACGAGCCATTGACAGTGGTGCAACAAGGGTATGTTGCAGGTGT 683
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 600 GCATTGGATGACATTGAACGAGCCATTGACAGTGGTGCAACAAGGATATGTTGCAGGTGT 659
Query 684 AATGGCTCCAGGAAGATGCTCCAAATTCACAAACCCTAATTGCACAGATGGAAATGGAGC 743
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 660 TATGGCTCCAGGAAGATGCTCCAAATTCACAAACCCTAATTGCACCGGTGGAAATGGAGC 719
Query 744 CACCGAGCCTTATATCGTTGGTCACAACCTCATCCTTTCTCACGGAGCCGCCGTCCAAGT 803
||| ||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 720 CACTGAGCCTTATATTGTTGGTCACAATCTCATCCTTGCTCACGGAGCCGCCGTCCAAGT 779
Query 804 CTACAGAGAAAAATACAAGGCTTCTCAACAA-GGTCAAGTTGGTATTGCTTTGAACGCGG 862
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 780 CTACAGAGAAAAATACAAGGCTTCTCAA-AATGGTCAAGTTGGTATTGCTTTGAACGCGG 838
Query 863 GTTGGAACTTGCCATATACAGAATCACC-GAAGGATAGATTAGCTGCGGCACGAGCCATG 921
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 839 GTTGGAACTTGCCATATACAGAATCACCAGA-GGATAGATTAGCTGCGGCACGAGCCATG 897
Query 922 GCCTTCACATTTGACTACTTTATGGAGCCGCTTGTGACGGGTAAATACCCGGTTGATATG 981
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 898 GCTTTCACATTTGACTACTTTATGGAGCCGCTTGTGACCGGTAAATACCCGGTTGATATG 957
Query 982 GTCAACAACGTAAAAGGC--C-GCTTACCTATATTCACTGCACAACAATCTAAGATGTTG 1038
|||||||| ||||||||| | ||||||||||||||||||||||||||||||||||| |
Sbjct 958 GTCAACAATGTAAAAGGCGGCCGCTTACCTATATTCACTGCACAACAATCTAAGATGCTA 1017
Query 1039 AAAGGCTCATATGATTTCATTGGCATCAACTATTACTCTTCTACTTATGCAAAGGATGTT 1098
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1018 AAAGGCTCATATGATTTCATTGGCATCAACTATTACTCCTCCACTTATGCAAAGGATGTT 1077
Query 1099 CCCTGCTCCACCAAAGATGTTACTATGTTCTCTGATCCTTGTGCCAGTGTCACAGGTGAA 1158
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1078 CCCTGCTCCACCAAAGATGTTACTATGTTCTCTGATCCTTGTGCTAGTGTCACAGGTGAA 1137
Query 1159 AGAGATGGAGTTCCCATTGGTCCAAAGGCTGCATCAGATTGGCTTTTAATATATCCAAAG 1218
||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 AGAGACGGAGTTCCGATCGGTCCAAAGGCTGCATCAGATTGGCTTTTAATATATCCAAAG 1197
Query 1219 GGAATTCGTGATCTTGTGCTCTATGCAAAATACAAGTTTAAGGACCCTGTCATGTACATA 1278
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1198 GGAATTCGTGATCTTGTCCTCTATGCAAAATACAAGTTCAAGGACCCTGTCATGTACATA 1257
Query 1279 ACTGAAAACGGGAGAGATGAATTTAGTACCAATAAAATCTTCCTTAAAGACGGTGACAGG 1338
|| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1258 ACCGAAAACGGGAGAGATGAATTTAGTACCAATAAAATCTTCCTTCAAGATGGTGACAGG 1317
Query 1339 ATCGATTACTACGCTCGACATCTCGAAATGGTTCAAGACGCTATCTCTGTTGGAGCCAAT 1398
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1318 ATCGATTACTATGCTCGACATCTCGAAATGGTTCAAGACGCTATCTCGGTTGGAGCCAAC 1377
Query 1399 GTGAAGGGATTTTTCGCATGGTCGTTGCTAGACAATTTCGAATGGGCAATGGGATACACG 1458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 GTGAAGGGATTTTTCGCATGGTCGTTGCTAGACAATTTCGAATGGGCAATGGGATACACG 1437
Query 1459 GTCCGGTTTGGACTGGTTTATGTGGATTTCAAAGACGGATGTAAGAGATATCCCAAGAAA 1518
||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1438 GTCCGGTTTGGGCTGGTTTACGTGGATTTCAAAGATGGATGTAAGAGATATCCCAAGAAA 1497
Query 1519 TCAGCTGAATGGTTCAGAAAGTTATTGAATGAAAAGAAAAACGATTGATGATGATGAGAT 1578
|| ||||| ||||||| ||| ||||||||||||||||||||| | || |||||||||
Sbjct 1498 TCTGCTGAGTGGTTCAAAAAATTATTGAATGAAAAGAAAAAC-A---AT--TGATGAGAT 1551
Query 1579 ATGTATATTTCATTA 1593
|||||||||||||||
Sbjct 1552 ATGTATATTTCATTA 1566
> Ahg494520 jgi|Araly1|494520|fgenesh2_kg.8__336__AT5G44640.1
Length=1705
Score = 1736 bits (940), Expect = 0.0
Identities = 1369/1573 (87%), Gaps = 42/1573 (3%)
Strand=Plus/Plus
Query 46 ATGAGAGGTAATTATCTTTCTTTGCTAGTAGTGCTCATTGTCTTGGCCTCCAATGATGTT 105
|||||| ||| ||||||||||| |||||||| || |||| ||||| |||||||| |||
Sbjct 1 ATGAGAACTAAATATCTTTCTTTACTAGTAGTCCTTGTTGTTTTGGCTTCCAATGAAGTT 60
Query 106 CTTGCCAA-CAACAACTCTTCAACACCTAAATTAAGAAGAAGTGATTTTCCTGAAGA-TT 163
||||||| ||| ||||||||||||||||| |||||||||||||||| || |||| ||
Sbjct 61 ATTGCCAAGAAAC-ACTCTTCAACACCTAAACTAAGAAGAAGTGATTTCCCAAAAGATTT 119
Query 164 TCATTTTTGGATCTGCAACATCTGCTTACCAGGTCGAAGGAGGTGCTCATGAAGATGGTA 223
|| |||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 120 TC-TTTTTGGAGCTGCAACATCTGCTTACCAAGTCGAAGGAGCTGCTCATGAAGATGGTA 178
Query 224 GAGGACCTAGTATCTGGGATACCTTCTCTGAGAAATATCCAGAGAAGATAAAGGATGGTA 283
||||||| ||||| |||||||| |||||||| |||||||| || |||||||| |||||||
Sbjct 179 GAGGACCAAGTATTTGGGATACATTCTCTGAAAAATATCCGGAAAAGATAAAAGATGGTA 238
Query 284 GCAATGGGTCTGTTGC-AGATAACTCTTACCATCTTTACAAGGAAGATGTGGCG-TTATT 341
||||||| ||| |||| || | | ||||||||||||||||| |||||||||| | ||| |
Sbjct 239 GCAATGGATCTATTGCAAG-TGATTCTTACCATCTTTACAAAGAAGATGTGG-GTTTACT 296
Query 342 GCATCAAATTGGGTTTAATGCATACAGATTCTCAATCTCATGGTCGAGGATCTTGCCTCG 401
||||||||||| ||| ||| || |||||||| ||||| ||||||||||| ||||| ||
Sbjct 297 ACATCAAATTGGTTTTGGTGCCTATAGATTCTCCATCTCGTGGTCGAGGATTTTGCCACG 356
Query 402 TGGGAATCTAAAAGGAGGAATCAACCAGGCTGGTATTGACTATTACAACAACTTGATCAA 461
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 357 TGGGAATCTAAAAGGAGGAATCAACCAAGCTGGTATTGACTATTACAACAACTTGATCAA 416
Query 462 TGAACTTTTGTCCAAAGGAATTAAGCCTTTTGCAACCATGTTCCATTGGGACACACCACA 521
||| |||||||| ||||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct 417 TGAGCTTTTGTCTAAAGGAATTAAGCCTTTCGCCACCATTTTCCATTGGGACACACCACA 476
Query 522 AGCCCTTGAAGATGCTTATGGTGGATTCCGTGGTGCCGAGATTGTGAACGATTTCCGCGA 581
|| ||||||||||||| || ||||| | |||||| ||||||||||| |||||||| ||
Sbjct 477 AGATATTGAAGATGCTTACGGAGGATTTCTTGGTGCGGAGATTGTGAATGATTTCCGTGA 536
Query 582 TTATGCGGATATTTGCTTCAAGAATTTTGGAGATAGAGTGAAGCATTGGATGACATTGAA 641
||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||| ||
Sbjct 537 TTATGCGGATATTTGTTTCAAGAATTTTGGAGATCGAGTTAAGCATTGGATGACATTAAA 596
Query 642 CGAGCCATTGACAGTGGTGCAACAAGGGTATGTTGCAGGTGTAATGGCTCCAGGAAGATG 701
||||||||| || |||||||||||||| |||||||| |||||||||||||||||||| ||
Sbjct 597 CGAGCCATTAACTGTGGTGCAACAAGGATATGTTGCTGGTGTAATGGCTCCAGGAAGGTG 656
Query 702 CTCCAAATTCACAAACCCTAATTGCACAGATGGAAATGGAGCCACCGAGCCTTATATCGT 761
||| ||||||||||| ||||||||||| | ||| ||||||| || ||||||||||| ||
Sbjct 657 CTCAAAATTCACAAATCCTAATTGCACTGCGGGAGATGGAGCTACAGAGCCTTATATTGT 716
Query 762 TGGTCACAACCTCATCCTTTCTCACGGAGCCGCCGTCCAAG-TCTACAGAGAAAAATACA 820
|||||||||||| |||||| | ||||||| || ||| | | | |||||||||||||| |
Sbjct 717 TGGTCACAACCTAATCCTTGCACACGGAGAAGCGGTC-AGGGTATACAGAGAAAAATATA 775
Query 821 AGGCTTCTCAACAA-GGTCAAGTTGGTATTGCTTTGAACGCGGGTTGGAACTTGCCATAT 879
| || |||||| || |||||||||||||| ||||||||||||||||||||||| || |||
Sbjct 776 AAGCATCTCAA-AATGGTCAAGTTGGTATCGCTTTGAACGCGGGTTGGAACTTACCTTAT 834
Query 880 ACAGAATCA-CCGAAGGATAGATTAGCTGCGGCACGAGCCATGGCCTTCACATTTGACTA 938
||||||||| |||||| |||| |||||||||||||||||||||||||||||||| |||||
Sbjct 835 ACAGAATCAGCCGAAG-ATAGGTTAGCTGCGGCACGAGCCATGGCCTTCACATTCGACTA 893
Query 939 CTTT-ATGGAGCCGCTTGTGACGGGTAAATACCCGGTTGATATGGTCAACAACGTAAAAG 997
||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||
Sbjct 894 -TTTCATGGAGCCGCTTGTGACCGGTAAATACCCGGTTGACATGGTCAATAACGTAAAAG 952
Query 998 GC---CGCTTACCTATATTCACTGC-ACAACAATCTAAGATGTTGAAAGGC-TCATATGA 1052
|| |||||||||| ||| ||||| | |||||||||| ||| | ||||| ||||||||
Sbjct 953 GCGGTCGCTTACCTACATTTACTGCTA-AACAATCTAAAATGCT-AAAGGGATCATATGA 1010
Query 1053 TTTCATTGGCATCAACTATTACTCTTC-TACTTATGCAAAGGATGTTCCCTGCTCCACC- 1110
||||||||||||||| |||||||| || | |||| || ||||||||||| ||||| | |
Sbjct 1011 TTTCATTGGCATCAATTATTACTCATCGT-CTTACGCTAAGGATGTTCCTTGCTCAAGCG 1069
Query 1111 AAAGATGTTACT-ATGTTCTCTGATCCTTGTGCCAGTGTCACAGGTGAAAGAGATGGAGT 1169
||| | ||||| | ||||||||||||||||| || ||||||||||||||||| |||||
Sbjct 1070 AAA-ACGTTACACAA-TTCTCTGATCCTTGTGCTAGCGTCACAGGTGAAAGAGAAGGAGT 1127
Query 1170 TCCCATTGGTCCAAAGGCTGCATCAGATTGGCTTTTAATATATCCAAAGGGAATTCGTGA 1229
|||||| ||||||||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1128 TCCCATCGGTCCAAAGGCAGCATCGGATTGGCTTTTGATATATCCAAAGGGAATTCGTGA 1187
Query 1230 TCTTGTGCTCTATGCAAAATACAAGTTTAAGGACCCTGTCATGTACATAACTGAAAACGG 1289
||| | |||||||||||||||||||| ||||| |||||| |||||||||| || |||||
Sbjct 1188 TCTCCTCCTCTATGCAAAATACAAGTTCAAGGATCCTGTCCTGTACATAACCGAGAACGG 1247
Query 1290 GAGAGATGAATTTAGTACCAATAAAATCTTCCTTAAAGACGGTGACAGGATCGATTACTA 1349
|||||||||| ||||||| ||||||| ||||||||| |||| ||||||||||||||
Sbjct 1248 GAGAGATGAAGCTAGTACCGGTAAAATCGACCTTAAAGATAGTGAGAGGATCGATTACTA 1307
Query 1350 CGCTCGACATCTCGAA-ATGGTTCAAGACGCTATCTCTGTTGGAGCCAATGTGAAGGGAT 1408
||||||||| | ||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1308 TGCTCGACATTT-GAAGATGGTTCAAGACGCTATCTCAATTGGAGCCAATGTGAAGGGAT 1366
Query 1409 T-TTTCGCATGGTCGTTGCTAGACAA-TTTCGAATGGGCAATGGGATACACGGTCCGGTT 1466
| ||| |||||||| |||||||| || ||| |||||||||| || ||| ||||||||||
Sbjct 1367 TCTTT-GCATGGTCTTTGCTAGATAACTTT-GAATGGGCAACAGGTTACGCGGTCCGGTT 1424
Query 1467 TGGACTGGTTTATGTGGATTTCAAAGACGGATGTAAGAGATATCCCAAGAAATCAGCTGA 1526
||||| ||||| ||||||||||| || ||| ||||||||||||| ||||||||||| |
Sbjct 1425 CGGACTAGTTTACGTGGATTTCAATGATGGACGTAAGAGATATCCTAAGAAATCAGCAAA 1484
Query 1527 ATGGTTCAGAAAGTTATTGAATGAAAAGAAAAACGATTGATGATGATGAGATATGTAT-A 1585
|||||||| ||| || |||| |||||||||| || || |||||||| ||| || |
Sbjct 1485 ATGGTTCACAAAATTGTTGAGCGAAAAGAAAAG-GA---AT--TGATGAGACATGCATCA 1538
Query 1586 TTTCATTATATTA 1598
|| ||||||||||
Sbjct 1539 TTCCATTATATTA 1551
> Ahg481414 jgi|Araly1|481414|fgenesh2_kg.4__474__AT2G25630.1
Length=1356
Score = 647 bits (350), Expect = 0.0
Identities = 581/688 (84%), Gaps = 34/688 (5%)
Strand=Plus/Plus
Query 486 GCCTTTTGCAACCATGTTCCATTGGGACACACCACAAGCCCTTGAAGATGCTTATGGTGG 545
|||||| || ||||| |||||||||||||||||||||| ||||||||||||||| || ||
Sbjct 351 GCCTTTCGCCACCATTTTCCATTGGGACACACCACAAGACCTTGAAGATGCTTACGGAGG 410
Query 546 ATTCCGTGGTGCCGAGATTGTGAACGATTTCCGCGATTATGCGGATATTTGCTTCAAGAA 605
||||||||| || || |||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 411 ATTCCGTGGGGCTGAAATTGTGAATGATTTCCGCGATTATGCGGATATTTGTTTCAAGAA 470
Query 606 TTTTGGAGATAGAGTGAAGCATTGGATGACATTGAACGAGCCATTGACAGTGGTGCAACA 665
|||||| ||| ||||||| |||||||||||||||||||| ||||| || |||||||||||
Sbjct 471 TTTTGGCGATCGAGTGAAACATTGGATGACATTGAACGAACCATTAACTGTGGTGCAACA 530
Query 666 AGGGTATGTTGCAGGTGTAATGGCTCCAGGAAGATGCTCCAAATTCACAAACCCTAATTG 725
||| |||||||| ||||| |||||||||| ||| || || ||||| ||||||||||||||
Sbjct 531 AGGATATGTTGCTGGTGTTATGGCTCCAGAAAGGTGTTCAAAATTTACAAACCCTAATTG 590
Query 726 CACAGATGGAAATGGAGCCACCGAGCCTTATATCGTTGGTCACAACCTCATCCTTTCTCA 785
||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 591 CACCTCCGGAAATGGAGCCACCGAGCCTTATATCGTTGGTCACAACCTCATTCTTGCTCA 650
Query 786 CGGAGCCGCCGTCCAAGTCTACAGAGAAAAATACAAGGCTTCTCAACAAGGTCAAGTTGG 845
||||| || ||| ||||||| ||| ||||||| |||||| ||||| || | | |
Sbjct 651 CGGAGAAGCAGTCAAAGTCTATAGAAAAAAATATAAGGCTACTCAA-AA----A-G--G- 701
Query 846 TATTGCTTTGAACGCGGGTTGGAACTTGCCATATACAGAATCACCGAAGGATAGATTAGC 905
| | | |||| || | ||| ||| |||||||| | |||||||| |||||
Sbjct 702 T-T-G----GAAC-----TT--ACCTT---ATA--CAGAATCATCTAAGGATAGGTTAGC 743
Query 906 TGCGGCACGAGCCATGGCCTTCACATTTGACTACTTTATGGAGCCGCTTGTGACGGGTAA 965
||||||||||||||||| |||||||| ||||| |||||||||||||| ||||| |||||
Sbjct 744 CGCGGCACGAGCCATGGCTTTCACATTCGACTATTTTATGGAGCCGCTCGTGACCGGTAA 803
Query 966 ATACCCGGTTGATATGGTCAACAACGTAAAAGGC---CGCTTACCTATATTCACTGCACA 1022
|||||||||||| ||||| ||||||||||||||| |||||||||| ||| ||| || |
Sbjct 804 ATACCCGGTTGACATGGTTAACAACGTAAAAGGCGGTCGCTTACCTACATTTACTACAAA 863
Query 1023 ACAATCTAAGATG-TTGAAAGGCTCATATGATTTCATTGGCATCAACTATTACTCTTCTA 1081
||||||||||||| || || || ||||||||||||||||| || || |||||||| |||
Sbjct 864 ACAATCTAAGATGCTT-AAGGGATCATATGATTTCATTGGAATAAATTATTACTCGTCTT 922
Query 1082 CTTATGCAAAGGATGTTCCCTGCTCCACC-AAAGATGTTACTATGTTCTCTGATCCTTGT 1140
|||||||||| |||||||| ||||| | | ||| | ||||| ||||||||||||||||||
Sbjct 923 CTTATGCAAAAGATGTTCCTTGCTCAAGCGAAA-ACGTTACAATGTTCTCTGATCCTTGT 981
Query 1141 GCCAGTGTCACAGGTGAAAGAGATGGAG 1168
| || |||||||| |||||||| ||||
Sbjct 982 TCTAGCGTCACAGGGGAAAGAGAAGGAG 1009
Score = 327 bits (177), Expect = 1e-88
Identities = 249/283 (88%), Gaps = 7/283 (2%)
Strand=Plus/Plus
Query 54 TAATTATCTTTCTTTGCTAGTAGTGCTCATTGTCTTGGCCTCCAATGATGTTCTTGCCAA 113
||| ||| ||| ||| ||||| || ||||||||||||| |||||||| ||| |||||||
Sbjct 9 TAAATATTTTTGTTTACTAGT-GT--TCATTGTCTTGGCTTCCAATGAAGTTGTTGCCAA 65
Query 114 CA-ACAACTCTTCAACACCTAAATTAAGAAGAA-GTGATTTTCCTGAAGATTTCATTTTT 171
| || |||||||||||||||||||||||| || |||||| || ||||||||||||||
Sbjct 66 GAGAC-ACTCTTCAACACCTAAATTAAGAA-AATATGATTTCCCAGAAGATTTCATTTTC 123
Query 172 GGATCTGCAACATCTGCTTACCAGGTCGAAGGAGGTGCTCATGAAGATGGTAGAGGACCT 231
||| ||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 124 GGAGCTGCAACCTCTGCGTACCAGGTCGAAGGAGCTGCTCATGAAGATGGTAGAGGACCT 183
Query 232 AGTATCTGGGATACCTTCTCTGAGAAATATCCAGAGAAGATAAAGGATGGTAGCAATGGG 291
||||| |||||||| |||||||| ||||| ||| | |||||||| ||||||||||| ||
Sbjct 184 AGTATATGGGATACGTTCTCTGAAAAATACCCACAAAAGATAAAAGATGGTAGCAACGGA 243
Query 292 TCTGTTGCAGATAACTCTTACCATCTTTACAAGGAAGATGTGG 334
||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 244 TCTATTGCAGATGACTCTTACCATCTTTACAAGGAAGATGTGG 286
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62658453025
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5