BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44460.1
Length=1950
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935381 jgi|Araly1|935381|scaffold_403369.1 2582 0.0
Ahg483572 jgi|Araly1|483572|fgenesh2_kg.4__2632__AT2G44470.3 1437 0.0
> Ahg935381 jgi|Araly1|935381|scaffold_403369.1
Length=1780
Score = 2582 bits (1398), Expect = 0.0
Identities = 1669/1793 (93%), Gaps = 45/1793 (3%)
Strand=Plus/Plus
Query 38 AATTCCAAAACACAAAAAAGGAATATGAAGATGCATTTTTTCATCCTCCTTGTAATAACC 97
|||||||||| | |||||| |||||||||||||| ||||||||||||||| | |||| |
Sbjct 1 AATTCCAAAA-A-AAAAAA--AATATGAAGATGCAATTTTTCATCCTCCTTATCATAATC 56
Query 98 TCATGGTTGTCGGAGAAAATTACTTCACTTCCTCCTGATTCTCGAGTATTCGATCGTCAT 157
|||||||| |||||||| |||||||||||||||||||| |||| |||| |||||||||||
Sbjct 57 TCATGGTTTTCGGAGAAGATTACTTCACTTCCTCCTGAATCTCAAGTACTCGATCGTCAT 116
Query 158 GGTTTTCCCGATAATTTTGTTTTTGGAACAGCTGCATCAGCTTTTCAGTACGAAGGTGCA 217
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 117 GGTTTTCCCGATAATTTTGTTTTTGGAACAGCTGCATCGGCTTTTCAGTACGAAGGTGCA 176
Query 218 ACAAGCGAAGGTGGGAAATCTCCATCTATATGGGATTACTTCAGCCACACTTTTCCAGAA 277
||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 177 ACAAGTGAAGGTGGGAAATCTCCAGCTATATGGGATTACTTCAGCCACACTTTTCCAGAG 236
Query 278 AGAACCAGAATGCAGAATGCAGATGTAGCGGTCGATTTTTACCATCGTTATAAGGATGAC 337
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 237 AGAACCAGGATGCAGAATGCAGATGTAGCGGTCGACTTTTACCATCGTTATAAGGATGAC 296
Query 338 ATCAAGTTGATGAAAGAGCTAAATATGGACGCTTTCAGATTTTCGATTTCGTGGGCTAGA 397
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 297 ATCAAGTTGATGAAAGACCTAAATATGGACGCTTTCAGATTTTCGATTTCGTGGGCGAGA 356
Query 398 TTAATACCCAGTGGAAAAGTAAAAGATGGAGTAAACAAAGAAGGTGTAGAATTCTATAAG 457
||||||||||||||||||||||| |||||||| ||| ||||||||||| |||||||||||
Sbjct 357 TTAATACCCAGTGGAAAAGTAAAGGATGGAGTTAACCAAGAAGGTGTACAATTCTATAAG 416
Query 458 GCTCTTATCGACGAGCTTGTTGCTAATGGCATTGAACCATCGATGACCCTCTACCATTGG 517
||||| ||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 417 GCTCTCATCGACGAGCTCGTTGCGAATGGCATTCAACCATCGATGACCCTCTACCATTGG 476
Query 518 GACCATCCTCAATCACTGGAAGACGAGTATGGT-GGTTTCTTAAGCCCTCAAATAGTAGA 576
|||||||||||| |||| || |||||||||||| ||||| |||||||| |||||||||||
Sbjct 477 GACCATCCTCAAGCACTTGAGGACGAGTATGGTGGGTTT-TTAAGCCCCCAAATAGTAGA 535
Query 577 AGATTTTCGAGATTTTTCAAGAGTGTGTTTTGAAGAATTCGGAGACAAAGTTAAGATGTG 636
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 536 AGATTTTCGAGATTTTTCAAGAGTATGTTTTGAAGAATTCGGAGACAAAGTTAAAATGTG 595
Query 637 GACTACTATAAACGAGCCTTATGTCATAACTGTTGCGGGCTACGACACTGGCAACAAAGC 696
|||||| |||||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 596 GACTACAATAAACGAGCCTTATGTCATAACTGTTGCGGGCTACGATACGGGAAACAAAGC 655
Query 697 GGTTGGACGATGCTCGAAATGGGTGAATAGTAAGTGTCAAGGTGGCGATTCAGGTACTGA 756
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 656 GGTGGGACGATGCTCGAAATGGGTGAATAGTAAGTGTCAAGGCGGCGATTCAGGTACCGA 715
Query 757 GCCTTACATTGCATCACATCACCTTCTTCTCGCTCATGCCGCAGCTGTACAAGAGTTCCG 816
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 716 GCCCTACATTGCATCACATCACCTTCTTCTTGCTCATGCCGCAGCTGTACAAGAGTTCCG 775
Query 817 AAAATGTAACAAGACTCAAGACGGTCAGATTGGGATAGTGTTATCTCCTTTGTGGTTTGA 876
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 776 AAAATGTAACAAGACTCAAGACGGTCAAATTGGGATAGTGTTATCTCCTTTGTGGTTTGA 835
Query 877 GCCTTACGACTCTGCTTCTCCTGCCGACAACGAAGCTGTTAAACGAGCTCTTGCCACTGA 936
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 836 GCCTTACGACTCTGCTTCTCCTTCCGATAACGAAGCTGTTAAACGAGCTCTTGCCACTGA 895
Query 937 ACTAGATTGGCATTTAGATCCAGTTATTCACGGAGATTATCCAGAAATGATGAAGAAACT 996
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 ACTAGATTGGCATTTAGATCCAGTTATTCACGGAGATTATCCAGAAATGATGAAGAAACT 955
Query 997 TGCCGGAAATAGATTACCTTCGTTCACTCCAGAACAATCCAAAATGTTGAAAAATTCATC 1056
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 956 CGCCGGAAATAGATTACCTTCTTTCACTCCAGAACAATCCAAAATGTTGAAAAATTCATC 1015
Query 1057 GGATTTCATTGGAATAAACTACTATACAGCGCGTTACGTTGCTCATATTCCACAAGC-CG 1115
||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||
Sbjct 1016 CGATTTCATTGGAATAAACTACTATACAACGCGTTACGTTGCTCATATTCCACAC-CTCG 1074
Query 1116 ATCCTGCTCGTCCGCGATTCGTAACCGATCATCAGCTCCAATGGCGAGTAACAAATCACA 1175
| ||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 1075 ACCCTGCTCGTCCACGATTTGTAACCGATCATCAGCTCCAATGGAGAGTAACAAATCACA 1134
Query 1176 GTAATCACCAATTCGGACCAGGGGAAGATCGAGGCATACTTCAATCACATCCTGAAGGTT 1235
||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1135 GTAATCACCAAATCGGACCAGGGGAAGATCGAGGCATACTCCAATCACATCCAGAAGGTT 1194
Query 1236 TACGAAAAGTTCTTAACTACATCAAAGATAAATACAACAACCCTATAGTTTATATCAAAG 1295
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1195 TACGAAAAGTTCTTAACTACATCAAAGATAAATACAATAACCCTATAGTTTATATAAAAG 1254
Query 1296 AGAACGGAATTAATGACTACGACGACGGTACAAAATCACGAGAGGAGATTCTCAATGATA 1355
|||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1255 AGAACGGAATCAATGACTACGACGATGGTACAAAATCACGAGAGGATATTCTCAATGATA 1314
Query 1356 CATTTAGGATAAGCTACCATGAGGACCATCTCCAACAACTCCAAAAAGCTATAATAGAGG 1415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 CATTTAGGATAAGCTACCATGAGGACCATCTCCAACAACTCCAAAAAGCTATAATAGAGG 1374
Query 1416 ATGGGTGTGACGTCCGAGGATATTACGTGTGGTCTTTACTAGACAATTTCGAGTGGGAAC 1475
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 ATGGATGTGACGTCAGAGGATATTACGTGTGGTCTTTACTAGACAATTTCGAGTGGGAAC 1434
Query 1476 ATGGATATTCTACTAGATTTGG-CGTGTACTATGTTGACTACGACAACGATCTCACTCGT 1534
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1435 ATGGATATTCTACTAGATTTGGTC-TGTACTATGTTGACTACGACAACGATCTCACTCGT 1493
Query 1535 ATTCCCAAAGATTCCGTTAACTGGTTCAAGCAGTTCCTCGATGTAAAGAAT-AA-A---- 1588
|||||||||||||| |||||||||||||||||||| |||||| |||||||| || |
Sbjct 1494 ATTCCCAAAGATTCTGTTAACTGGTTCAAGCAGTTTCTCGATTTAAAGAATGAAGAAACA 1553
Query 1589 ---GA--AA----TATGGGAT--GT-----G-----TCACATAAAGAAAGGTATAATAAG 1627
|| || |||||||| || | |||||| |||||||||||||||||
Sbjct 1554 AATGATGAAGGAATATGGGATTTGTCAAATGAGAGGTCACATGAAGAAAGGTATAATAAG 1613
Query 1628 ACTTTTGATGATGT-AGAAAGTTTCGAGGCATCTGTTGGTTCGATTCTCTATCTCATGAC 1686
||||| |||||| | ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1614 ACTTTCGATGAT-TCAGAAAGTTTCGAGGCATCTGTTGGTTCGATTCTCTATCTAATGAC 1672
Query 1687 GAACAACATATCGAGGAGAGAAGAGGAAGAAAGAGATCAATGCGCTTTTGGGAATCTTAA 1746
|||||||||||| |||||||| ||| |||||||||||||||||||| | ||||||||
Sbjct 1673 ---CAACATATCGAGAAGAGAAGAAGAAAAAAGAGATCAATGCGCTTTTCGAAATCTTAA 1729
Query 1747 TGATCAGTCCGGTCTGTTGTTGGAATCATATAA-TTCTTTCGGATTTTTAGAA 1798
||||||||| ||| | ||| ||| |||||| || |||||| ||||||| ||||
Sbjct 1730 TGATCAGTCGGGTTTATTGCTGGGATCATA-AAGTTCTTTGGGATTTT-AGAA 1780
> Ahg483572 jgi|Araly1|483572|fgenesh2_kg.4__2632__AT2G44470.3
Length=1959
Score = 1437 bits (778), Expect = 0.0
Identities = 1315/1569 (84%), Gaps = 58/1569 (4%)
Strand=Plus/Plus
Query 44 AAAA-CACAAA-AAAG-GAATATG-AAGATGCATTTTTTCATCCTCCTTGTAATAACCTC 99
|||| || ||| |||| || ||| ||| |||| ||||||||||||||| | |||| |||
Sbjct 32 AAAACCAGAAAGAAAGAAAAAATGAAAG-TGCAATTTTTCATCCTCCTTTTGATAATCTC 90
Query 100 ATGG-TTGTCGGAGAAAATTACTTCACTTCCTCCTGATTCTCGAGTA-TTCGATCGTCA- 156
|||| || | ||| |||||||| |||||||| || |||| |||| || ||| | |
Sbjct 91 ATGGCTT-ACTCCGAAGATTACTTCTCTTCCTCCAGAATCTCAAGTACTT-GATAG-AAG 147
Query 157 TGGTTTTCCCGATA-ATTTTGTTTTTGGAACAGCTGCATCAGCTTTTCAGTA-CGAAGGT 214
| ||||||| || | |||| ||||| ||||| ||| ||| || |||||| | |||||||
Sbjct 148 TAGTTTTCCTGA-AGATTTCGTTTTCGGAACCGCTATATCGGCCTTTCAG-AGCGAAGGT 205
Query 215 GCAACAAGCGAAGGTGGGAAATCTCCATCTATATGGGATTACTTCAGCCACACTTTTCCA 274
||||||||||||||||| ||||| ||| |||| |||||||||||||||||||| ||||||
Sbjct 206 GCAACAAGCGAAGGTGGAAAATCGCCAACTATTTGGGATTACTTCAGCCACACCTTTCCA 265
Query 275 GAAAGAACCAGA-ATGCAGAATGCAGATGTAGCGGTCGATTTTTACCATCGTTATAAGGA 333
|||||||||| | |||||||||| ||| || || |||||||||||||||||| |||||
Sbjct 266 GAAAGAACCA-ATATGCAGAATGGAGACGTTGCCACCGATTTTTACCATCGTTACAAGGA 324
Query 334 TGACATCAAGTTGATGAAAGAGCTAAATATGGACGCTTTCAGATTTTCGATTTCGTGGGC 393
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 325 TGACATCAAATTGATGAAAGAGTTAAATATGGACGCTTTCAGATTTTCGATTTCGTGGGC 384
Query 394 TAGATTAATACCCAGTGGAAAAGTAAAAGATGGAGTAAACAAAGAAGGTGTAGAATTCTA 453
|||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||
Sbjct 385 CAGATTAATACCCAGTGGAAAGGTAAAGGATGGAGTAAACAAAGAAGGTGTACAATTCTA 444
Query 454 TAAGGCTCTTATCGACGAGCTTGTTGCTAATGGCATTGAACCATCGATGACCCTCTACCA 513
|||||||| || ||||||||| |||||||||| ||| |||| ||| |||| ||||| ||
Sbjct 445 CAAGGCTCTCATAGACGAGCTTATTGCTAATGGTATTCAACCTTCGGTGACTCTCTATCA 504
Query 514 TTGGGACCATCCTCAATCACTGGAAGACGAGTATGGTGGTTTCTTAAGCCCTCAAATAGT 573
|||||||||||||||| |||| || ||||||||||||||||| |||||||| |||||| |
Sbjct 505 TTGGGACCATCCTCAAGCACTTGAGGACGAGTATGGTGGTTTTTTAAGCCCCCAAATAAT 564
Query 574 AGAAGATTTTCGAGATTTTTCAAGAGTGTGTTTTGAAGAATT-CGGAGACAAAGTTAAGA 632
||||||||||||| |||| ||||||| ||||||||| |||| |||||||||||||||||
Sbjct 565 AGAAGATTTTCGAAATTTCGCAAGAGTCTGTTTTGAA-AATTTCGGAGACAAAGTTAAGA 623
Query 633 TGTGGACTACTATAAACGAGCCTTATGTCATAACTGTTGCGGGCTACGACACTGGCAACA 692
||||||| ||||| |||||||||||||| |||| |||||||||||| ||||| |||||||
Sbjct 624 TGTGGACAACTATCAACGAGCCTTATGTTATAAGTGTTGCGGGCTATGACACAGGCAACA 683
Query 693 AAGCGGTTGGACGATGCTCGAAATGGGTGAATAGTAAGTGTCAAGGTGGCGATTCAGGT- 751
||||||||||||| ||| ||||||||||||||||| |||||||| || || || ||
Sbjct 684 AAGCGGTTGGACGGTGCACGAAATGGGTGAATAGTCGGTGTCAAGCCGGTGACTC-GGCC 742
Query 752 A-CTGAGCCTTACATTGCATCACATCACCTTCTTCTC-GCTCATGCCGCAGCTGTACAAG 809
| | ||||||||||||| |||||||||||||||||| || ||||| || || |||||||
Sbjct 743 ATC-GAGCCTTACATTGTATCACATCACCTTCTTCTTTGC-CATGCTGCGGCAGTACAAG 800
Query 810 AGTTCCGAAAATGTAACAAGACTC-A--AGACGGTCAGATTGGGATAGTGTTATCTCCTT 866
|||||||||| |||||||||||| | ||| | | ||||||||||||||||||| ||||
Sbjct 801 AGTTCCGAAATTGTAACAAGACTTTACCAGATGATAAGATTGGGATAGTGTTATCGCCTT 860
Query 867 TGTGGTTTGAGCCTTACGACTCTGCTTC-TCCTGCCGACAACGAAGCTGTTAAACGAG-C 924
|||| || ||||||| ||||| | || || ||| || || ||||| ||| |||||| |
Sbjct 861 GGTGGCTTCAGCCTTATGACTCCACATCGTC-TGCTGATAAAGAAGCCGTTGAACGAGGC 919
Query 925 TCTTGCCACT-GAACTAGATTGGCATTTAGATCCAGTTATTCACGGAGATTATCCAGAAA 983
|||||| | ||| |||||||||||||| |||| || ||| ||||| ||||||| ||||
Sbjct 920 -CTTGCCG-TAGAAGTAGATTGGCATTTAAATCCGGTGATTTACGGAAATTATCCTGAAA 977
Query 984 TGATGAAGAAA-CTTGCCGGAAATAGATTACCTTCGTTCACTCCAGAACAATCCAAA-AT 1041
||||| ||| | || ||| ||||||||||| | ||||| | ||||||||| ||| ||
Sbjct 978 AAATGAA-AAAGCATGTGGGACATAGATTACCTGCTTTCACACTAGAACAATC-AAAGAT 1035
Query 1042 GTTGAA-AAATTCATCGGATTTCATTGGAATAAACTACTATACAGCGCG-TT-ACGTTGC 1098
||| || ||||||||| ||||| ||||||||||||||||||| || || || || ||
Sbjct 1036 GTT-AATAAATTCATCAGATTTTATTGGAATAAACTACTATAGTGCACGCTTCACC--GC 1092
Query 1099 TCATATTCCACA-AGCCGATCCTGCTCGTCCGCGATTC-GTAACCGATCATCAGCTCCA- 1155
||||||||| || | |||||| || | || |||||| | ||| ||||| || | |
Sbjct 1093 TCATATTCCTCACATT-GATCCTACTAGGCCTCGATTCAG-AACTGATCAGCATTTTGAG 1150
Query 1156 ATGGCGAGTAACAAATCACAGTAATCACCAATTCGGACCAGGGGAAGATCGAGGCATACT 1215
| | |||||||||||| |||||| ||| || ||||||||||||| |||||||||||| |
Sbjct 1151 AAGA-GAGTAACAAATCGCAGTAACCACGAAATCGGACCAGGGGATGATCGAGGCATAAT 1209
Query 1216 TCAATCACATCCTGAAGGTTTACGAAAAGTTCTTAACTACATCAAAGATAAATACAACAA 1275
|| || | || ||||| || |||| |||||||||||||||||||||||||||||| ||
Sbjct 1210 GCACTCGTACCCAGAAGGCTTGCGAAGAGTTCTTAACTACATCAAAGATAAATACAATAA 1269
Query 1276 CCCTATAGTTTATATCAAAGAGAACGGAATTAATGACTACGACGACGGTACAAAATCACG 1335
|||||| || ||||| |||||||| ||||| ||||||||||| || |||||||||||| |
Sbjct 1270 CCCTATCGTCTATATAAAAGAGAATGGAATCAATGACTACGATGATGGTACAAAATCAAG 1329
Query 1336 AGAGGAGA-TTCTCAATGATACATTTAGGATAAGCTACCATGAGGACCATCTCCAACAAC 1394
|| | | ||||||| || ||||||||||||||||||||| |||||||||| ||||||
Sbjct 1330 GGAA-ACAATTCTCAAGGACACATTTAGGATAAGCTACCATCAGGACCATCTTAAACAAC 1388
Query 1395 TCCAAAAAGCTATAATAGAGGATGGGTGTGACGTCCGAGGATATTACGTGTGGTCTTTAC 1454
| || ||||||||||| |||||||||||||| || |||||||||||||||||||||||
Sbjct 1389 TTCACAAAGCTATAATTGAGGATGGGTGTGATGTTAGAGGATATTACGTGTGGTCTTTAT 1448
Query 1455 TAGACAATTTCGAGTGGGAACATGGATATTCTACTAGATTTGGCGTGTACTATGTTGACT 1514
| ||||| ||||||||||| |||||||| |||||||||||||| |||||||||||||||
Sbjct 1449 TCGACAACTTCGAGTGGGAGCATGGATACTCTACTAGATTTGGTATGTACTATGTTGACT 1508
Query 1515 ACGACAACGATCTC-ACTCG-TATTCCCAAAGATTCCGTTAACTGGTTCAAGCAGTTCCT 1572
| || ||| ||||| | || ||| || ||||||||||| |||||||||||| | || ||
Sbjct 1509 ATGAAAACAATCTCCAA-CGGTAT-CCTAAAGATTCCGTCAACTGGTTCAAGAAATTTCT 1566
Query 1573 CGATGTAAA 1581
| | |||||
Sbjct 1567 C-A-GTAAA 1573
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73285631380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5