BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44490.1
Length=2009
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935386 jgi|Araly1|935386|scaffold_403374.1 2802 0.0
Ahg941288 jgi|Araly1|941288|scaffold_601832.1 137 3e-31
Ahg952422 jgi|Araly1|952422|scaffold_7000004.1 67.6 3e-10
Ahg474364 jgi|Araly1|474364|fgenesh2_kg.1__4318__AT1G52400.1 67.6 3e-10
> Ahg935386 jgi|Araly1|935386|scaffold_403374.1
Length=1720
Score = 2802 bits (1517), Expect = 0.0
Identities = 1653/1720 (96%), Gaps = 4/1720 (0%)
Strand=Plus/Plus
Query 97 CAAGAGAAAAGCAACCAAAGATGGCACATCTTCAAAGAACATTTCCTACTGAGATGTCAA 156
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1 CAAGAGAAAAGCAACCAAAGATGGCACATCTTCAAAGAACCTTTCCTACTGAGATGTCAA 60
Query 157 AAGGTAGAGCTAGCTTTCCAAAAGGCTTTCTCTTTGGAACTGCTTCATCTTCTTATCAGT 216
| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 61 AGGGTAGAGCTAGCTTTCCAAAAGGCTTTCTCTTTGGAACTGCTTCTTCTTCTTACCAGT 120
Query 217 ACGAAGGAGCAGTGAATGAAGGTGCGAGAGGACAAAGCGTGTGGGATCATTTCTCCAACA 276
| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 ATGAAGGAGCAGTGAGTGAAGGTGCGAGAGGACAAAGCATGTGGGATCATTTCTCCAACA 180
Query 277 GGTTTCCTCACAGAATCAGTGATTCTAGCGACGGAAACGTTGCCGTTGATTTCTACCATC 336
|||||||||||||||||||||||||||| |||||||| || ||||||||||||| |||||
Sbjct 181 GGTTTCCTCACAGAATCAGTGATTCTAGTGACGGAAATGTCGCCGTTGATTTCTTCCATC 240
Query 337 GTTACAAGGAAGATATTAAGAGAATGAAGGATATAAACATGGATTCGTTTCGGCTTTCCA 396
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 GTTACAAGGAAGATATCAAGAGAATGAAGGATATAAACATGGATTCGTTTAGGCTTTCCA 300
Query 397 TTGCTTGGCCACGAGTTCTACCTTATGGCAAAAGGGATAGAGGAGTTAGTGAAGAAGGAA 456
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 301 TTGCTTGGCCACGAGTTCTACCTTATGGCAAAAGGGAGAGAGGAGTTAGTGAAGAAGGAA 360
Query 457 TTAAGTTTTACAATGATGTTATTGATGAACTCTTAGCCAATGAAATCACTCCTCTTGTTA 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTAAGTTTTACAATGATGTTATTGATGAACTCTTAGCCAATGAAATCACTCCTCTTGTTA 420
Query 517 CTATCTTTCATTGGGACATACCACAGGATCTTGAAGATGAATACGGCGGTTTTCTAAGCG 576
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 421 CTATCTTTCATTGGGACATACCTCAGGATCTTGAAGATGAATATGGCGGTTTTCTAAGCG 480
Query 577 AGCAGATTATAGATGACTTCAGAGACTATGCGAGTCTCTGCTTCGAGAGATTTGGGGACA 636
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AGCAGATCATAGATGACTTCAGAGACTATGCGAGTCTCTGCTTCGAGAGATTTGGGGACA 540
Query 637 GAGTGAGTCTGTGGTGCACAATGAATGAGCCGTGGGTCTACAGTGTCGCGGGCTATGACA 696
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 541 GAGTGAGTCTGTGGTGCACTATGAATGAGCCGTGGGTCTACAGTGTCGCGGGATATGACA 600
Query 697 CAGGAAGGAAAGCGCCAGGACGGTGCTCCAAGTATGTTAATGGCGCTAGTGTTGCTGGAA 756
|||| ||||||||||||||||||||||| |||||||||||||| |||||| |||||||||
Sbjct 601 CAGGGAGGAAAGCGCCAGGACGGTGCTCGAAGTATGTTAATGGTGCTAGTATTGCTGGAA 660
Query 757 TGTCGGGATACGAGGCATATATTGTGAGCCATAACATGCTTCTAGCGCACGCAGAAGCAG 816
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TGTCCGGATACGAGGCATATATTGTGAGCCATAACATGCTTCTAGCGCACGCAGAAGCAG 720
Query 817 TGGAAGTGTTTAGAAAATGTGACCATATTAAAAACGGACAAATTGGGATTGCGCATAATC 876
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 721 TGGAAGTGTTTAGAAAATGTGACCATATTAAAAATGGAAAAATTGGGATTGCGCATAATC 780
Query 877 CACTTTGGTACGAGCCATATGATCCGAGTGATCCAGATGATGTCGAAGGATGTAATCGAG 936
||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||
Sbjct 781 CACTTTGGTACGAGCCATATGATCCGAATGATCCAGAGGATGTAGAAGGATGTAATCGAG 840
Query 937 CTATGGACTTCATGCTTGGTTGGCATCAGCATCCGACTGCTTGTGGAGACTATCCAGAAA 996
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 841 CTATGGACTTCATGCTTGGTTGGCATCACCACCCGACTGCTTGTGGAGACTATCCAGAAA 900
Query 997 CGATGAAGAAATCAGTTGGAGATAGATTACCGAGTTTTACACCAGAACAATCTAAGAAAC 1056
|||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 901 CGATGAAGAAATCAATTGGAGATCGATTACCGAGTTTTACACCAGAACAATCCAAGAAAC 960
Query 1057 TTATAGGCTCTTGCGATTACGTTGGTATAAACTACTATAGCTCGCTTTTCGTGAAGAGTA 1116
| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 961 TGATAGGCTCTTGCGATTACGTTGGTATAAACTACTATAGCTCGCTTTTTGTAAAGAGTA 1020
Query 1117 TCAAACACGTGGATCCTACGCAACCTACTTGGAGAACTGACCAAGGCGTTGATTGGATGA 1176
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1021 TCAAAAACGTGGATCCTACGCAACCTACTTGGAGAACTGACCAAGGCGTAGATTGGATGA 1080
Query 1177 AAACCAACATAGATGGGAAACAAATAGCAAAACAAGGAGGATCAGAGTGGAGTTTCACAT 1236
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1081 AAACCAACATAGATGGGAAACAAATAGCGAAACAAGGAGGATCAGAGTGGAGTTTCACAT 1140
Query 1237 ATCCAACAGGACTCAGAAACATTTTGAAGTATGTGaaaaaaaCTTATGGCAATCCTCCCA 1296
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1141 ATCCAACAGGACTCAGAAACATTTTGAAGTATGTGAAAAACACTTATGGCAATCCTCCGA 1200
Query 1297 TTCTCATAACTGAAAACGGGTATGGTGAAGTAGCGGAACAGAGTCAGAGTCTTTATATGT 1356
|||| ||||| || |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1201 TTCTGATAACCGAGAACGGGTATGGTGAAGTAGCGGAACAGAGTCAGAGTCTGTATATGT 1260
Query 1357 ACAATCCTTCAATCGACACAGAGAGATTGGAGTACATTGAAGGACATATCCACGCTATTC 1416
| ||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||
Sbjct 1261 ATAATCCTTCAATCGACACAGAGAGATTGGAGTACATAGAAGGACATATCCATGCGATTC 1320
Query 1417 ATCAAGCCATCCATGAAGATGGAGTAAGAGTGGAAGGTTATTACGTATGGTCATTGCTAG 1476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 ATCAAGCCATCCATGAAGATGGAGTAAGAGTGGAAGGTTATTACGTATGGTCATTGCTAG 1380
Query 1477 ATAACTTCGAGTGGAACAGTGGATATGGTGTGAGATATGGTTTATATTACATTGATTACA 1536
|||||||||||||||||||||||||||| || ||||||||||| |||||||| |||||||
Sbjct 1381 ATAACTTCGAGTGGAACAGTGGATATGGAGTAAGATATGGTTTGTATTACATAGATTACA 1440
Query 1537 AAGATGGGCTTAGACGATACCCGAAAATGTCGGCGTTATGGTTGAAAGAGTTCTTGAGGT 1596
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1441 AAGATGGGCTTAGGCGATACCCGAAAATGTCGGCTTTATGGTTGAAAGAGTTCTTGAGGT 1500
Query 1597 TTGATCAAGAAGACGATTCTTCGACGTCTaagaaagaagagaagaaagagaGCTATGGAA 1656
||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1501 TTGATCAAGAAT-C--TTCTTCGACGTCTAAGGAAGAAGAGAAGAAAGAGAGCTATGGAA 1557
Query 1657 AACAGTTATTGCATTCTGTTCAGGACAGTCAATTTGTTCATTCGATTAAAGACAGTGGTG 1716
||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1558 AACAGCTATTGCATTCTGTTCAAGACAGTCAATTTGTTCATTCGATTAAAGACAGCGGTG 1617
Query 1717 CGTTACCTGCGGTTTTGGGGAGCTTGTTCGTTGTGTCTGCAACTGTTGGTACTTCTCTGT 1776
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 CGTTACCCGCGGTTTTGGGGAGCTTGTTCGTTGTGTCTGCAACTGTTGGTACTTCTCTGT 1677
Query 1777 TCTTCAAAGGAGCTAATAATTGAAACAGAAGAAACAAAAT 1816
||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1678 TCTTCAAAGGAGCTAATAATTGAAAGAGA-GAAACAAAAT 1716
> Ahg941288 jgi|Araly1|941288|scaffold_601832.1
Length=1638
Score = 137 bits (74), Expect = 3e-31
Identities = 205/266 (77%), Gaps = 18/266 (7%)
Strand=Plus/Plus
Query 321 GTTGATTTCTACCATCGTTACAAGGAAGATATTAAGAGAATGAAGGATA-TAAACATGGA 379
||||||||||||||||||||||||||||||||| || | ||||| | | ||||||||||
Sbjct 296 GTTGATTTCTACCATCGTTACAAGGAAGATATTCAGTTATTGAAGAA-ACTAAACATGGA 354
Query 380 TTCG-TTTCGGCTT-TCCATTGCTTGGCCACGAGT-TCTACCTTATGGCA-AAAGGGATA 435
|| |||| | || || || | ||||| ||| | | | ||| |||| | ||||| |||
Sbjct 355 --CGGTTTCAGATTCTCTTTTTCATGGCCCCGAATATTT-CCTCATGGAAGAAAGG-ATA 410
Query 436 GAGGA-GTTAGTGAAGAAGGAAT-T-AAGTTTTACAATGATGTTATTGATGAACT-CTTA 491
||| ||||| ||| || | | ||||||||| | ||| |||| || || || |||
Sbjct 411 -AGGGCGTTAGC-AAGGTGGG-TGTCAAGTTTTACCACGATCTTATAGACGAGCTTCTT- 466
Query 492 GCCAATGAAATCACTCCTCTTGTTACTATCTTTCATTGGGACATACCACAGGATCTTGAA 551
|| |||| || ||||| || | || |||| ||||||||||| || || || || |||
Sbjct 467 GCAAATGGTATAACTCCACTAGCAACGGTCTTCCATTGGGACATTCCTCAAGACCTAGAA 526
Query 552 GATGAATACGGCGGTTTTCTAAGCGA 577
||||||||||||||||||||||||||
Sbjct 527 GATGAATACGGCGGTTTTCTAAGCGA 552
> Ahg952422 jgi|Araly1|952422|scaffold_7000004.1
Length=391
Score = 67.6 bits (36), Expect = 3e-10
Identities = 158/213 (74%), Gaps = 23/213 (11%)
Strand=Plus/Plus
Query 163 GAGCTAGCTTTCCAAAAGGCTTTCTCTTTGGAACTGCTTCA-T-CTTC-TTATCA-GTAC 218
||||||| ||||| ||||||||||||||||| || || || | || | || ||| ||
Sbjct 130 GAGCTAGTTTTCCCAAAGGCTTTCTCTTTGGCACGGC--CAGTGCTGCGTT-TCAGGT-T 185
Query 219 GAAGGAGCAGT-GAATGAAG-GTGCGAGAGGACAAAGCGTGTGGGATCAT-TTCTCCAAC 275
|||||||| || ||| |||| || ||||||| ||||||||||| ||| | || |
Sbjct 186 GAAGGAGCCGTAGAA-GAAGCTTG-TAGAGGACCGAGCGTGTGGGA-CATCTACTGTAGG 242
Query 276 AGGT-TTCCTCACAGAAT-CAGTGATTCTAGCGACGGAAACGTTGCCGTTGATTTCTACC 333
| | | | | ||| || ||||| | | |||| | || ||| |||||||||||
Sbjct 243 AAATATGCAT-TCAG-ATGCAGTG--GCGA-TAACGGCGATGTGGCCACTGATTTCTACC 297
Query 334 ATCGTTACAAGGAAGATATTAAGAG-AATGAAG 365
|||||||||||||||||||||| | |||||||
Sbjct 298 ATCGTTACAAGGAAGATATTAA-ATTAATGAAG 329
> Ahg474364 jgi|Araly1|474364|fgenesh2_kg.1__4318__AT1G52400.1
Length=1842
Score = 67.6 bits (36), Expect = 3e-10
Identities = 149/199 (75%), Gaps = 25/199 (13%)
Strand=Plus/Plus
Query 219 GAAGGAGCAG-TGAATGAAGG-TGCGAGAGGACAAAGCGTGTGGGATCA-TTTCTCCAA- 274
|||||||| | || ||||||| ||| ||||| | |||| |||||||| | |||| | ||
Sbjct 249 GAAGGAGCTGTTG-ATGAAGGTTGC-AGAGGTCCAAGCATGTGGGAT-ACTTTCACTAAG 305
Query 275 CAGGTTTCCTCACAGA-ATCAGTG--ATTC-TAGCGACGGAAACGTTGCCGTTGATTTCT 330
|| | |||| || | | || ||| | || || || | | | ||||| || |||||||
Sbjct 306 CA-G-TTCC-CAAATAGAT--GTGAAAATCATAACG-CTG--ATGTTGCTGTGGATTTCT 357
Query 331 ACCATCGTTACAAGGAAGATATTAAGA-GAATGAAGGATATAAACA-TGGATTCGTTTCG 388
|||||||||||||||||||||| || || ||||||| | |||| || || ||||
Sbjct 358 ACCATCGTTACAAGGAAGATATCCAGTTGA-TGAAGGACCTTAACACTG-ATG-GTTTTA 414
Query 389 G-CTTTCCATTGCTTGGCC 406
| ||||| ||||| |||||
Sbjct 415 GACTTTCTATTGCGTGGCC 433
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75532955835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5