BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44500.1
Length=2183
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483577 jgi|Araly1|483577|fgenesh2_kg.4__2637__AT2G44500.1 3029 0.0
> Ahg483577 jgi|Araly1|483577|fgenesh2_kg.4__2637__AT2G44500.1
Length=2107
Score = 3029 bits (1640), Expect = 0.0
Identities = 1994/2154 (93%), Gaps = 68/2154 (3%)
Strand=Plus/Plus
Query 1 TCCCTGATTCATCGCCGTAGCTGTGTGACCGAACATTGCTGCGAGTTCCTCAAAACCCAA 60
||||||||||| ||||||||||||||||| ||||||||| ||| |||||||||||||||
Sbjct 1 TCCCTGATTCAACGCCGTAGCTGTGTGACTGAACATTGCAACGATTTCCTCAAAACCCAA 60
Query 61 ATCTTTCTTCCTCAAAGACTCTGTTTTTTCTTTCTTCCTTTCTTCAATGGCGTTATCGAA 120
||| |||||| ||||||||||||||| ||| | || |||||||||||||||||||||||
Sbjct 61 ATCCTTCTTCTTCAAAGACTCTGTTTATTC--T-TT-CTTTCTTCAATGGCGTTATCGAA 116
Query 121 AAACAGTAACAGTAACAGCTTTAACAAGAAGAAAGTTTCGTATATCTCAGTCCCTTCTCA 180
|||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 117 AAACAGTAACAGCAGCAGCAGCAACAAGAAGAAAGTTTCGTATATCTCAGTCCCTTCTCA 176
Query 181 GATCATAAACTCTTTATCATCTTCCTCATTACAATCTCTTCTTGTTTCTCCCAAGAAATC 240
||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct 177 GATCATAAACTCTTTATCATCATCCTCTTTGCAATCTCTTCTTGTTTCTCCCAAGAAATC 236
Query 241 ATCAAGAAGCACCAACAGATTCAGCTTCTCTTATAGGAACCCTAGAATCTGGTTCTTTAC 300
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 237 ATCAAGAAGCACCAACAGATTCAGCGTCTCTTATAGAAACCCTAGAATCTGGTTCTTTAC 296
Query 301 TCTCTTCCTCGTCTCACTCTTTGGAATGTTGAAACTCGGTTTCAACGTTGACCCAATCTC 360
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 297 TCTCTTCCTCGTCTCACTCTTTGGAATGTTGAAACTTGGATTCAACGTTGACCCAATCTC 356
Query 361 TCTCCCTTTCTCACGTTACCCTTGTTCAACGACCCAACAACCACTAAGCTTCGACGGAGA 420
||||||||||||||||||||||||||| |||| | || ||| ||||||||||||| ||
Sbjct 357 TCTCCCTTTCTCACGTTACCCTTGTTCGACGA---ACCATCCATTAAGCTTCGACGGTGA 413
Query 421 ACAAAACGCTGCATCCCATCTTGGTTTGGCTCAAGAGCCGATTTTGTCTACTGGGTCATC 480
||||||||||| ||||||||| ||||||| |||||| ||| |||| || ||||||| ||
Sbjct 414 ACAAAACGCTGAATCCCATCTGGGTTTGGTTCAAGAATCGAATTTGGCTCCTGGGTCTTC 473
Query 481 GAATTCGAATGCGATTATACAATTAAACGGTGGAAAGAACGAGACTTTGTTAACGGAAGG 540
||||||||||| |||||| |||||| |||||||||| |||||||||||||| ||||||||
Sbjct 474 GAATTCGAATGGGATTATTCAATTAGACGGTGGAAAAAACGAGACTTTGTTGACGGAAGG 533
Query 541 TGATTTCTGGAAGCAACCTGATGGGTTAGGGTTTAAGCCCTGTTTGGGATTTACAAGTCA 600
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 TGATTTCTGGAAACAACCTGATGGGTTAGGGTTTAAGCCCTGTTTGGGATTTACAAGTCA 593
Query 601 ATATAGAAAAGATAGCAATTCGATTTTGAAGAACAGATGGAAGTATTTGCTTGTTGTTGT 660
||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 594 GTATAGAAGAGATAGCAATTCGATTTTGAAGAACAGATGGAAATATTTGCTTGTTGTTGT 653
Query 661 CTCTGGTGGGATGAATCAGCAAAGGAATCAGATTGTTGATGCTGTTGTGATCGCTAGGAT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 CTCTGGTGGGATGAATCAGCAAAGGAATCAGATTGTTGATGCTGTTGTGATCGCTAGGAT 713
Query 721 CCTTGGAGCTTCTTTAGTTGTTCCTGTTTTGCAGGTTAATGTCATTTGGGGAGACGAAAG 780
||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 714 TCTTGGTGCTTCTTTAGTTGTTCCGGTTTTACAGGTTAATGTCATTTGGGGAGACGAAAG 773
Query 781 TGAATTTGCGGATATATTCGATTTGGAGCATTTCAAGGATGTTTTAGCAGATGATGTTCA 840
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 774 TGAATTTGCGGATATATTCGATTTGGAGCATTTCAAGGATGTTTTAGCGGATGATGTTCA 833
Query 841 TATAGTTTCGTCTTTACCTTCTACACATGTTATGACGAGACCTGTTGAAGAGAAGAGGAC 900
|||||| || ||| |||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 834 TATAGTGTCTTCTCTACCTTCTACACATGTAATGACGAGACCTGTTGAAGAGAAAAGGAC 893
Query 901 TCCACTTCATGCTTCTCCTCAATGGATTCGTGCTCATTATCTTAAGCGAATTAACAGAGA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 TCCACTTCATGCTTCTCCTCAATGGATTCGTGCTCATTATCTTAAGCGAATTAACAGAGA 953
Query 961 AAGAGTTTTACTTCTCCGTGGACTCGATTCAAGACTCTCCAAAGACCTCCCTTCAGATCT 1020
||||||||||||||| ||||| |||||||||||||||||||| ||||| ||||| |||||
Sbjct 954 AAGAGTTTTACTTCTTCGTGGCCTCGATTCAAGACTCTCCAAGGACCTTCCTTCTGATCT 1013
Query 1021 TCAGAAACTCCGATGCAAGGTTGCTTTCCAAGCGCTTAGATTTTCTCCGAGGATTCTTGA 1080
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1014 TCAGAAACTCCGATGCAAGGTGGCTTTCCAAGCGCTGAGATTTTCTCCGAGGATTCTTGA 1073
Query 1081 ACTCGGTAATAAACTAGCTTCAAGAATGCGTAACCAAGGACAGTATCTCTCACTTCATCT 1140
||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 ACTTGGTAACAAGTTAGCTTCAAGAATGCGTAACCAAGGACAGTATCTCTCACTTCATCT 1133
Query 1141 AAGAATGGAGAAAGATGTTTGGGTTAGAACTGGTTGTCTCCCTGGTTTAACTCCCGAGTA 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 AAGAATGGAGAAAGATGTTTGGGTTAGAACTGGTTGTCTCCCTGGTTTAACTCCCGAGTA 1193
Query 1201 CGATGAAATAGTCAACAGCGAAAGAGAA-CGACACCCTGAGCTTCTTACCGGTAGATCAA 1259
|||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||
Sbjct 1194 CGATGAAATAGTCAACAGCGAAAGGGAAGCT-CACCCTGAGCTTCTTACCGGTAGATCAA 1252
Query 1260 ACATGACTTATCACGAGAGAAAACTTGCCGGTTTATGCCCTTTAACTGCTCTAGAAGTCA 1319
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 1253 ACATGACTTATCACGAGAGAAAACTCGCCGGTCTATGCCCTTTAACTGCTCTAGAAGTCA 1312
Query 1320 CAAGGCTGCTTAAAGCATTAGAAGCTCCAAAGGATGCGAGAATCTATTGGGCAGGAGGAG 1379
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1313 CAAGGCTGCTTAAAGCATTAGAAGCTCCAAAGAATGCGAGAATCTATTGGGCAGGAGGAG 1372
Query 1380 AGCCTCTAGGAGGAAAAGAGGTTTTGGAGCCACTAACTAAAGAATTCCCTCAGTTCTACA 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 AGCCTCTAGGAGGAAAAGAGGTTTTGGAGCCACTAACTAAAGAATTCCCTCAGTTCTACA 1432
Query 1440 ACAAGCACGATCTTGCTTTACCTGGCGAGCTTGAACCATTTGCCAACAAAGCTTCGGTTA 1499
||||||| |||||||| ||||| ||||| || |||||||| ||||| |||||||||||||
Sbjct 1433 ACAAGCATGATCTTGCATTACCAGGCGAACTCGAACCATTCGCCAAGAAAGCTTCGGTTA 1492
Query 1500 TGGCTGCTATAGACTACATTGTCTGCGAAAAGAGCGATGTTTTCATACCGTCTCATGGAG 1559
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1493 TGGCTGCTATCGACTACATTGTCTGCGAAAAGAGCGATGTTTTCATACCGTCTCATGGAG 1552
Query 1560 GAAATATGGGACACGCGTTACAAGGGCAAAGAGCTTACGCTGGTCACAAGAAATACATCA 1619
|||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1553 GAAACATGGGACATGCGTTACAAGGGCAACGAGCTTACGCTGGTCACAAGAAATACATCA 1612
Query 1620 CTCCTAATAAGAGACAGATGCTTCCTTATTTCATGAACTCGTCGCTTCCTGAATCGGATT 1679
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1613 CTCCTAATAAGAGACAGATGCTTCCTTATTTCATGAATTCGTCGCTTCCTGAATCGGATT 1672
Query 1680 TTAACAGAATTGTGAAAGATCTTCATCGAGAATCGCTAGGACAGCCGGAGTTGAGAATGA 1739
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1673 TTAACAGGATTGTGAAAGATCTTCATCGAGAATCGCTAGGACAGCCGGAATTGAGAATGA 1732
Query 1740 GCAAAGCTGGTAAAGATGTTACAAAACATCCTGTTCCAGAGTGTATGTGCTCGGATAGAC 1799
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1733 GCAAAGCCGGTAAAGATGTTACAAAACATCCTGTTCCAGAGTGTATGTGCTCGGATAGAC 1792
Query 1800 -A-A-CAACAAGAACAACAG---------TCCGATGCTTAAGCCTTGAAGGACATTTTGG 1847
| | |||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 1793 GACAACAACAACAACAACAACAACAACAATCCGATGCTTAAGCCTTGAAGGACATTTTG- 1851
Query 1848 A-CATT--A--TT-T-GGTG-CGCGGAAAATGAAGAAGACGCCGATTTTTTCCCGATCAC 1899
| |||| | || | |||| ||||||| |||||||||||||||||||||| |
Sbjct 1852 ATCATTTCACATTATTGGTGGCGCGGAAGATGAAGAAGACGCCGATTTTTT----A---- 1903
Query 1900 CCGGAAGATTGATTGAGGAAGACGATTCATGGTGGTTCGTGCGATATTCTTTTAGTTCGG 1959
| | |||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1904 --G-A---TTGATTGAGGAAGACGATTCGTGGTGGTTCGTGCGATATTCTTTTAGCTCGG 1957
Query 1960 GTTTTAATCTGATCATTTTTTCAAAATCTTTTGGAGTAAATATATATTCGTTTCAACTGA 2019
||||||||||||||||||| |||| ||||||||||||||||||||||||||| | |
Sbjct 1958 -TTTTAATCTGATCATTTTT-CAAA-TCTTTTGGAGTAAATATATATTCGTTT----T-A 2009
Query 2020 GGTTAtttttttCTTACATGTTTTTACGATATACGTGAGAAGTAGAATAGTGAGGTTATA 2079
| | ||||||||||||||||||| |||||||| |||||||||||||
Sbjct 2010 ------------C--A--TGTTTTTACGATATACGTGGGAAGTAGACTAGTGAGGTTATA 2053
Query 2080 AGATATGATTCTTTGATTCGATTTATTTGGGCTGTAATTATATATTACAGAGTT 2133
|||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2054 AGATATGATTCTTTGATTCGTTTTATTTGGGCTGTAATTATATATTACAGAGTT 2107
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82160658465
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5