BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G44510.1 Length=1318 Score E Sequences producing significant alignments: (Bits) Value Ahg935388 jgi|Araly1|935388|scaffold_403376.1 1616 0.0 Ahg487162 jgi|Araly1|487162|fgenesh2_kg.6__296__AT5G03830.1 316 2e-85 > Ahg935388 jgi|Araly1|935388|scaffold_403376.1 Length=1025 Score = 1616 bits (875), Expect = 0.0 Identities = 967/1011 (96%), Gaps = 7/1011 (1%) Strand=Plus/Plus Query 156 AGATGCCTCGAAGACCATCATCAGGAAGAAGAGTGTTAAAGCATCAGCCTTTAACATTTT 215 ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 20 AGATGCCTCGAAGACCATCATCAGGAAGAAGAGTGTTAAAGTATCAGCCTTTAGCATTTT 79 Query 216 CACCGTTTATGCGGTTACTTTCCTTTGCTTCAATGGCTAGGCGTGATTTGTCTCATCCTG 275 |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 80 CACCGTTTATGCGGTTACTTTCCTTTGCTTCAATGGCTAGGCGTAATTTGCCTCATCCTG 139 Query 276 AAGATTGTCAATGTTCTGATGAAGATATATCTTTTGATGAAAAGCAAAAGATCCCTAATT 335 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct 140 AAGATTGTCAATGTTCTGATGAAGAGATATCTTTTGATGAAAAGGAAAAGATCCCTAATT 199 Query 336 TA-CCAAGAAAAGGGAAAGAAGAACAAGTCTCGGACTCGTCTGATGAAGAAGATTCTCAG 394 || | ||| |||||||||||| ||||| | |||||||||||||||||||||||||||||| Sbjct 200 TATCTAAG-AAAGGGAAAGAACAACAATTATCGGACTCGTCTGATGAAGAAGATTCTCAG 258 Query 395 GAAGATGTCCAAGCAGACTTTGAGTTCTTTGATCCTAAACCTACAGACTTTCATGGTGTT 454 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 259 GAAGATGTCCAAGCAGACTTTGAGTTCTTTGATCCTAAACCTACAGACTTTCATGGAGTC 318 Query 455 AAGATCCTGTTACAAAACTATCTCGATGACAAGGAGTGGGATTTGAGCAGTTTTGTTGAT 514 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 319 AAGATCCTGTTACAAAACTATCTCGATGACAAGGAGTGGGATTTGAGCAGTTTTGTTGAT 378 Query 515 TGCATATTGGAGCAAACAACTGTAGGAACTGTTGTGAAAGTAGCTGATGATGAGGATGAG 574 | ||||||||||||||||||||||||||||||||| ||||| || ||||||||||| ||| Sbjct 379 TTCATATTGGAGCAAACAACTGTAGGAACTGTTGTAAAAGTTGCAGATGATGAGGACGAG 438 Query 575 TCAGTATTTGCTCTTGTCACTGCTCTTAACATGGCAAGAGATAAGGACAACAAGTGTTTT 634 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| Sbjct 439 TCAGTATTTGCTCTTGTCACTGCTCTTAACATGGCAAGATATAAGGACAACAAGTGCTTT 498 Query 635 AGAGAGTTAAAAGAGTTTCTTCGTAAAGTTTGTTCTGAAAAGAATATAGCGAATAATCTA 694 ||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 499 AGAGACTTAAAAGAGTTTCTTCGAAAAGTTTGTTCAGAAAAGAATATAGCGAATAATCTA 558 Query 695 GAAATGCTCTTAGAGAAAAAGGCACAAGATGTTGGTTTATTGGTATCTCAAAGAGTGATG 754 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 559 GAAATGCTCTTAGAGAAAAAGGCACAAGATGTTGGTTTATTGGTATCTCAAAGAGTGATG 618 Query 755 AATCTTCCTCCACAACTTCTTCCTCCACTTTATGATGGATTGTTCGATGAAGTCTCATGG 814 || |||||||||||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 619 AACCTTCCTCCACAACTTCTTCCTCCACTGTACGATGGATTGTTCGATGAAGTCTCATGG 678 Query 815 GCAA-TCGAAGATGAGCCTACAGAAAAGCTTCGAAGATCATTCCGTTTTAAGTCATATCT 873 || | | ||||| |||||||||||| ||||||||||||||||||| || ||||||||||| Sbjct 679 GCCACT-GAAGACGAGCCTACAGAAGAGCTTCGAAGATCATTCCGCTTCAAGTCATATCT 737 Query 874 TCTAGTTACCAAGATTTACAAGCTGAAGAATCCTAAGCAGAGAAAACCTCGACATGGTGA 933 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 738 TCTAATTACCAAGATTTACAAGCTGAAGAATCCTAAGCAGAGAAAACCTCGACATGGTGA 797 Query 934 AGAAGACATTGAAGACACAGTATTTCTTAAGCCTGAAGATGAACTCTTTCTCGAGCTTAG 993 ||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||| Sbjct 798 AGA---CATTGAAGAAACAATATTTCTTAAGCCTGAAGATGAACTCTTTCTCGAGCTTAG 854 Query 994 CTCTTGGTCCTTCACATTCCCTATGCGCTCACAGCTCGTTACTTCCCAAGAAATGAAGAA 1053 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 855 TTCTTGGTCCTTCACATTCCCTATGCGCTCACAGCTCGTTACTTCCCAAGAAATGAAGAA 914 Query 1054 TTATCAGCTGATGGGTTTAGTGATGGCCGTGGAAGCAAACAAGATTCCTAAATTCAGACA 1113 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 915 TTATCAGTTGATGGGTTTAGTGATGGCCGTGGAAGCAAACAAGATTCCTAAATTCAGACA 974 Query 1114 GATGTTGAACTCTCTCATTGATTAACAATGATGAACATCTTCTTCTTAAAG 1164 ||||||||||||||| |||||| |||||||||||||||||||||||||||| Sbjct 975 GATGTTGAACTCTCTTATTGATGAACAATGATGAACATCTTCTTCTTAAAG 1025 > Ahg487162 jgi|Araly1|487162|fgenesh2_kg.6__296__AT5G03830.1 Length=753 Score = 316 bits (171), Expect = 2e-85 Identities = 247/283 (87%), Gaps = 8/283 (3%) Strand=Plus/Plus Query 619 GGACAACAAGTGTTTTAGAGAGTTAAAAGAGTTTCTTCGT-AAAGTTTGTTCTGAAAAGA 677 |||||| ||||| ||||||||| ||||||||||||||| | ||||||||||| || |||| Sbjct 363 GGACAATAAGTGCTTTAGAGAGCTAAAAGAGTTTCTTC-TCAAAGTTTGTTCGGAGAAGA 421 Query 678 ATA-TAGCGAATAATCTAGAAATGCTCTTAGAGAAAAAGGC-ACAAGATGTTGGTTTATT 735 | | |||| | | |||||||| | ||| ||||||||||||| | ||||||| |||||||| Sbjct 422 A-AGTAGCTAGTGATCTAGAACTACTCGTAGAGAAAAAGGCGA-AAGATGTCGGTTTATT 479 Query 736 GGTATCTCAAAGAGTGATGAATCTTCCTCCACAACTTCTTCCTCCACTTTATGATGGATT 795 |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 480 GGTATCTCAAAGAGTGATGAATCTTCCTCCACAACTCCTTCCTCCACTATATGATGGATT 539 Query 796 GTTCGATGAAGTCTCATGGGCAA-TCGAAGATGAGCCTACAGAAAAGCTTCGAAGATCAT 854 |||||| |||||||||||||| | | ||||| |||||||||||| |||||||| | |||| Sbjct 540 GTTCGACGAAGTCTCATGGGCCACT-GAAGACGAGCCTACAGAACAGCTTCGAGGGTCAT 598 Query 855 TCCGTTTTAAGTCATATCTTCTAGTTACCAAGATTTACAAGCT 897 |||| || ||||||||| ||||| | || |||||| | ||||| Sbjct 599 TCCGCTTCAAGTCATATATTCTAATCACTAAGATTCATAAGCT 641 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49292931681 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5