BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44510.1
Length=1318
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935388 jgi|Araly1|935388|scaffold_403376.1 1616 0.0
Ahg487162 jgi|Araly1|487162|fgenesh2_kg.6__296__AT5G03830.1 316 2e-85
> Ahg935388 jgi|Araly1|935388|scaffold_403376.1
Length=1025
Score = 1616 bits (875), Expect = 0.0
Identities = 967/1011 (96%), Gaps = 7/1011 (1%)
Strand=Plus/Plus
Query 156 AGATGCCTCGAAGACCATCATCAGGAAGAAGAGTGTTAAAGCATCAGCCTTTAACATTTT 215
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 20 AGATGCCTCGAAGACCATCATCAGGAAGAAGAGTGTTAAAGTATCAGCCTTTAGCATTTT 79
Query 216 CACCGTTTATGCGGTTACTTTCCTTTGCTTCAATGGCTAGGCGTGATTTGTCTCATCCTG 275
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 80 CACCGTTTATGCGGTTACTTTCCTTTGCTTCAATGGCTAGGCGTAATTTGCCTCATCCTG 139
Query 276 AAGATTGTCAATGTTCTGATGAAGATATATCTTTTGATGAAAAGCAAAAGATCCCTAATT 335
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 140 AAGATTGTCAATGTTCTGATGAAGAGATATCTTTTGATGAAAAGGAAAAGATCCCTAATT 199
Query 336 TA-CCAAGAAAAGGGAAAGAAGAACAAGTCTCGGACTCGTCTGATGAAGAAGATTCTCAG 394
|| | ||| |||||||||||| ||||| | ||||||||||||||||||||||||||||||
Sbjct 200 TATCTAAG-AAAGGGAAAGAACAACAATTATCGGACTCGTCTGATGAAGAAGATTCTCAG 258
Query 395 GAAGATGTCCAAGCAGACTTTGAGTTCTTTGATCCTAAACCTACAGACTTTCATGGTGTT 454
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 259 GAAGATGTCCAAGCAGACTTTGAGTTCTTTGATCCTAAACCTACAGACTTTCATGGAGTC 318
Query 455 AAGATCCTGTTACAAAACTATCTCGATGACAAGGAGTGGGATTTGAGCAGTTTTGTTGAT 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 319 AAGATCCTGTTACAAAACTATCTCGATGACAAGGAGTGGGATTTGAGCAGTTTTGTTGAT 378
Query 515 TGCATATTGGAGCAAACAACTGTAGGAACTGTTGTGAAAGTAGCTGATGATGAGGATGAG 574
| ||||||||||||||||||||||||||||||||| ||||| || ||||||||||| |||
Sbjct 379 TTCATATTGGAGCAAACAACTGTAGGAACTGTTGTAAAAGTTGCAGATGATGAGGACGAG 438
Query 575 TCAGTATTTGCTCTTGTCACTGCTCTTAACATGGCAAGAGATAAGGACAACAAGTGTTTT 634
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 439 TCAGTATTTGCTCTTGTCACTGCTCTTAACATGGCAAGATATAAGGACAACAAGTGCTTT 498
Query 635 AGAGAGTTAAAAGAGTTTCTTCGTAAAGTTTGTTCTGAAAAGAATATAGCGAATAATCTA 694
||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 499 AGAGACTTAAAAGAGTTTCTTCGAAAAGTTTGTTCAGAAAAGAATATAGCGAATAATCTA 558
Query 695 GAAATGCTCTTAGAGAAAAAGGCACAAGATGTTGGTTTATTGGTATCTCAAAGAGTGATG 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 559 GAAATGCTCTTAGAGAAAAAGGCACAAGATGTTGGTTTATTGGTATCTCAAAGAGTGATG 618
Query 755 AATCTTCCTCCACAACTTCTTCCTCCACTTTATGATGGATTGTTCGATGAAGTCTCATGG 814
|| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 619 AACCTTCCTCCACAACTTCTTCCTCCACTGTACGATGGATTGTTCGATGAAGTCTCATGG 678
Query 815 GCAA-TCGAAGATGAGCCTACAGAAAAGCTTCGAAGATCATTCCGTTTTAAGTCATATCT 873
|| | | ||||| |||||||||||| ||||||||||||||||||| || |||||||||||
Sbjct 679 GCCACT-GAAGACGAGCCTACAGAAGAGCTTCGAAGATCATTCCGCTTCAAGTCATATCT 737
Query 874 TCTAGTTACCAAGATTTACAAGCTGAAGAATCCTAAGCAGAGAAAACCTCGACATGGTGA 933
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 TCTAATTACCAAGATTTACAAGCTGAAGAATCCTAAGCAGAGAAAACCTCGACATGGTGA 797
Query 934 AGAAGACATTGAAGACACAGTATTTCTTAAGCCTGAAGATGAACTCTTTCTCGAGCTTAG 993
||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 798 AGA---CATTGAAGAAACAATATTTCTTAAGCCTGAAGATGAACTCTTTCTCGAGCTTAG 854
Query 994 CTCTTGGTCCTTCACATTCCCTATGCGCTCACAGCTCGTTACTTCCCAAGAAATGAAGAA 1053
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 855 TTCTTGGTCCTTCACATTCCCTATGCGCTCACAGCTCGTTACTTCCCAAGAAATGAAGAA 914
Query 1054 TTATCAGCTGATGGGTTTAGTGATGGCCGTGGAAGCAAACAAGATTCCTAAATTCAGACA 1113
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 915 TTATCAGTTGATGGGTTTAGTGATGGCCGTGGAAGCAAACAAGATTCCTAAATTCAGACA 974
Query 1114 GATGTTGAACTCTCTCATTGATTAACAATGATGAACATCTTCTTCTTAAAG 1164
||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 975 GATGTTGAACTCTCTTATTGATGAACAATGATGAACATCTTCTTCTTAAAG 1025
> Ahg487162 jgi|Araly1|487162|fgenesh2_kg.6__296__AT5G03830.1
Length=753
Score = 316 bits (171), Expect = 2e-85
Identities = 247/283 (87%), Gaps = 8/283 (3%)
Strand=Plus/Plus
Query 619 GGACAACAAGTGTTTTAGAGAGTTAAAAGAGTTTCTTCGT-AAAGTTTGTTCTGAAAAGA 677
|||||| ||||| ||||||||| ||||||||||||||| | ||||||||||| || ||||
Sbjct 363 GGACAATAAGTGCTTTAGAGAGCTAAAAGAGTTTCTTC-TCAAAGTTTGTTCGGAGAAGA 421
Query 678 ATA-TAGCGAATAATCTAGAAATGCTCTTAGAGAAAAAGGC-ACAAGATGTTGGTTTATT 735
| | |||| | | |||||||| | ||| ||||||||||||| | ||||||| ||||||||
Sbjct 422 A-AGTAGCTAGTGATCTAGAACTACTCGTAGAGAAAAAGGCGA-AAGATGTCGGTTTATT 479
Query 736 GGTATCTCAAAGAGTGATGAATCTTCCTCCACAACTTCTTCCTCCACTTTATGATGGATT 795
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 480 GGTATCTCAAAGAGTGATGAATCTTCCTCCACAACTCCTTCCTCCACTATATGATGGATT 539
Query 796 GTTCGATGAAGTCTCATGGGCAA-TCGAAGATGAGCCTACAGAAAAGCTTCGAAGATCAT 854
|||||| |||||||||||||| | | ||||| |||||||||||| |||||||| | ||||
Sbjct 540 GTTCGACGAAGTCTCATGGGCCACT-GAAGACGAGCCTACAGAACAGCTTCGAGGGTCAT 598
Query 855 TCCGTTTTAAGTCATATCTTCTAGTTACCAAGATTTACAAGCT 897
|||| || ||||||||| ||||| | || |||||| | |||||
Sbjct 599 TCCGCTTCAAGTCATATATTCTAATCACTAAGATTCATAAGCT 641
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49292931681
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5