BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44520.1
Length=1603
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483579 jgi|Araly1|483579|fgenesh2_kg.4__2639__AT2G44520.1 1947 0.0
> Ahg483579 jgi|Araly1|483579|fgenesh2_kg.4__2639__AT2G44520.1
Length=1390
Score = 1947 bits (1054), Expect = 0.0
Identities = 1222/1301 (94%), Gaps = 20/1301 (2%)
Strand=Plus/Plus
Query 96 GATGTGGCGAAGATCTGTTGTTTATCGTTTCTCTTCAAGAATCTCTGTTTCTTCTTCGTT 155
||||||||||| ||||||||| | ||||||||||||||| ||||||||||||||||||||
Sbjct 1 GATGTGGCGAACATCTGTTGTGTCTCGTTTCTCTTCAAGGATCTCTGTTTCTTCTTCGTT 60
Query 156 ACCAAACCCTAGACTGATTCCTTGGTCCCGCGAATTATGTGCCGTTAATAGCTTCTCCCA 215
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 61 ACCAAACCCTAGACTGATTCCTTGGTCCCGCGAATTATGTGCCGTTAATAGCTTTTCCCA 120
Query 216 GCCTCCGGTCTCGACGGAATCAACTGCTAAGTTAGGGATCACTGGTGTTAGATCTGATGC 275
||||||||||||| | ||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 121 GCCTCCGGTCTCGTCTGAATCAACTCCTAAGTTAGGGATCACTGGTGTTAGATCCGATGC 180
Query 276 CAATCGAGTTTTTGCCACTGCTACTGCCGCCGCTACAGCTACAGCTACCACCGGTGAGAT 335
|||||||||||||||||||||||||| | | |||| ||||||||||||||||||||
Sbjct 181 CAATCGAGTTTTTGCCACTGCTACTG-TG--G---CAGCCACAGCTACCACCGGTGAGAT 234
Query 336 TTCGTCTAGAGTTGCGGCTTTGGCTGGATTAGGGCATCACTACGCTCGTTGTTATTGGGA 395
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 235 TTCGTCTAGAGTTGCGGCGGTGGCTGGATTAGGGCATCACTACGCTCGTTGTTATTGGGA 294
Query 396 GCTTTCTAAAGCTAAACTTAGTATGCTTGTGGTTGCAACTTCTGGAACTGGGTATATTCT 455
||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 295 GCTTTCTAAAGCTCGACTTAGTATGCTTGTGGTTGCGACTTCTGGAACTGGGTATATTCT 354
Query 456 GGGTACGGGAAATGCTGCAATTAGCTTCCCGGGGCTTTGTTACACATGTGCAGGAACCAT 515
|||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||
Sbjct 355 GGGTACGGGAAATGCTGCAATTAGCTTCCCGGGGCTTTGTTATACTTGTGCTGGAACCAT 414
Query 516 GATGATTGCTGCATCTGCTAATTCCTTGAATCAGATTTTTGAGATAAGCAATGATTCTAA 575
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 415 GATGATTGCTGCTTCTGCTAATTCCTTGAATCAGATTTTTGAGATAAGCAATGATGCTAA 474
Query 576 GATGAAAAGAACGATGCTAAGGCCATTGCCTTCAGGACGTATTAGTGTTCCACACGCTGT 635
|||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 GATGAAGAGAACAATGTTAAGGCCATTGCCTTCAGGACGTATTAGTGTTCCACACGCTGT 534
Query 636 TGCATGGGCTACTATTGCTGGTGCTTCTGGTGCTTGTTTGTTGGCCAGCAAGACTAATAT 695
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 535 TGCATGGGCCACTATTGCTGGTGCTTCTGGTGCTTGTTTGTTGGCTAGCAAGACTAATAT 594
Query 696 GTTGGCTGCTGGACTTGCATCTGCCAATCTTGTACTTTATGCGTTTGTTTATACTCCGTT 755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 GTTGGCTGCTGGACTTGCATCTGCCAATCTTGTACTTTATGCGTTTGTTTATACTCCGTT 654
Query 756 GAAGCAACTTCACCCTATCAATACATGGGTTGGCGCTGTTGTTGGTGCTATCCCACCCTT 815
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 655 GAAGCAACTTCACCCTATCAATACATGGGTTGGTGCTGTTGTTGGTGCTATCCCTCCCTT 714
Query 816 GCTTGGGTGGGCGGCAGCGTCTGGTCAGATTTCATACAATTCGATGATTCTTCCAGCTGC 875
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 715 GCTTGGGTGGGCTGCAGCGTCTGGTCAGATTTCATTCAATTCGATGATTCTTCCAGCTGC 774
Query 876 TCTTTACTTTTGGCAGATACCTCATTTTATGGCCCTTGCACATCTCTGCCGCAATGATTA 935
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 775 TCTTTACTTTTGGCAGATACCTCATTTTATGGCCCTAGCACATCTCTGCCGCAATGATTA 834
Query 936 TGCAGCTGGAGGTTACAAGATGTTGTCACTCTTTGATCCGTCAGGGAAGAGAATAGCAGC 995
|||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||
Sbjct 835 TGCAGCTGGAGGTTACAAGATGCTGTCGCTCTTTGATCCATCAGGGAAGAGAATAGCAGC 894
Query 996 AGTGGCTCTAAGGAACTGCTTTTACATGATCCCTCTCGGTTTCATCGCCTATGACTGGGG 1055
|||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 895 TGTGGCTCTTAGGAACTGCTTTTACATGGTCCCTCTCGGTTTCATCGCCTACGACTGGGG 954
Query 1056 GTTAACCTCAAGTTGGTTTTGCCTCGAATCAACACTTCTCACACTAGCAATCGCTGCAAC 1115
||||||||||| ||||||||| | |||||||||||||| ||||||||||||||||||||
Sbjct 955 ATTAACCTCAAGCTGGTTTTGCGTTGAATCAACACTTCTTACACTAGCAATCGCTGCAAC 1014
Query 1116 AGCATTTTCATTCTACCGAGACCGGACCATGCATAAAGCAAGGAAAATGTTCCATGCCAG 1175
||||||||||||||| |||||||| |||||||| ||||||||||| ||||||||||| ||
Sbjct 1015 AGCATTTTCATTCTATCGAGACCGAACCATGCAAAAAGCAAGGAAGATGTTCCATGCGAG 1074
Query 1176 TCTTCTCTTCCTTCCTGTTTTCATGTCTGGTCTTCTTCTACACCGTGTCTCTAATGATAA 1235
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1075 TCTTCTCTTCCTTCCTGTTTTCATGTCTGGTCTTCTTCTACACCGTATCTCTAATGATAA 1134
Query 1236 TCAGCAACAACTCGTAGAAGAAGCCGGATTAACAAATTCTGTATCTGGTGAAGTCAAAAC 1295
|||||||||||| ||||||||||||| ||| ||||| | | | || |||||
Sbjct 1135 CCAGCAACAACTCATAGAAGAAGCCGGTTTATCAAAT---G-A-------A-GT-AAAAC 1181
Query 1296 -TCAGAGGCGAAAGAAACGTGTGGCTCAACCTCCGGTGGCTTATGCCTCTGCTGCACCGT 1354
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1182 CTCTCAGGCGAAAGAAACGTGTGGCTCAACCTCCGGTGGCTTATGCTTCTGCTGCACCGT 1241
Query 1355 TTCCTTTCCTCCCAGCTCCTTCCTTCTACTCTCCATGATAA 1395
|||||||||| ||||||||||||||||| ||||||| ||||
Sbjct 1242 TTCCTTTCCTTCCAGCTCCTTCCTTCTATTCTCCATAATAA 1282
Score = 152 bits (82), Expect = 7e-36
Identities = 105/115 (91%), Gaps = 5/115 (4%)
Strand=Plus/Plus
Query 1457 TAAGTTTAATCTTTGGTTAATAATGAAGTGGAGAACGCATACAAGTTTATGTATTTTTTC 1516
||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 1280 TAA-TTTAATCTTTGGTTAATAATGAAGTGGAGAACGCATAAAAGTTTATGT-TTTTTA- 1336
Query 1517 TCATCTCCACATAATTGTATTTTTTCTCTAAGTATGTTTCAAATGATACAAAATA 1571
||||||||||||||||||||||| |||||| |||||||| |||||||||||||
Sbjct 1337 --ATCTCCACATAATTGTATTTTTTTTCTAAGCATGTTTCATATGATACAAAATA 1389
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60068316365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5