BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44525.1
Length=766
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483580 jgi|Araly1|483580|fgenesh2_kg.4__2640__AT2G44525.1 1035 0.0
> Ahg483580 jgi|Araly1|483580|fgenesh2_kg.4__2640__AT2G44525.1
Length=650
Score = 1035 bits (560), Expect = 0.0
Identities = 621/651 (95%), Gaps = 2/651 (0%)
Strand=Plus/Plus
Query 3 GTCTCGACGGCTGCGGAAATCGGAAAATCACGATTGAGGACTTTGAGCTGCCACGAAGAT 62
||||||||||||| | ||||||| |||||| |||||||||| |||||||||| |||||||
Sbjct 1 GTCTCGACGGCTGTGAAAATCGG-AAATCAGGATTGAGGACATTGAGCTGCCGCGAAGAT 59
Query 63 GGCGATGAGGTTGAAATCAATGGCGACTTTGCCGAAATTGATTCAAAGTATGAGAAAAGA 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GGCGATGAGGTTGAAATCAATGGCGACTTTGCCGAAATTGATTCAAAGTATGAGAAAAGA 119
Query 123 AGTTCCGAAGCATTCTAATCCTGTTTTGCCCTCTCTGAGACGAGCTTTTTCCCTCTATGA 182
||||||||||||||| |||| ||||||||| || || ||| ||||||| || ||||||||
Sbjct 120 AGTTCCGAAGCATTCGAATCTTGTTTTGCCATCGCTAAGAAGAGCTTTCTCTCTCTATGA 179
Query 183 TCAGATCAATCTCATTGACAATGTTCCTGAAGACCAGCTTCGCTTCCAAGAATTTAATGA 242
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TCAGATCAATCTCATAGACAATGTTCCTGAAGACCAGCTTCGCTTCCAAGAATTTAATGA 239
Query 243 TACGAGTTTCACTGTGAATGGAGTCAAATACGAAGGTAGCTTACTCTGTGTTGGGAATCT 302
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 240 TACGAGTTTCACTGTGAATGGGGTCAAATACGAAGGTAGCTTACTCTGTGTTGGGAATTT 299
Query 303 GTTAATGTCATGGAGTCCTCGTAAATTTTCAGAGATCACCACTGATAGCTTGTCTATCTT 362
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 300 GTTAATGTCATGGAGTCCTCGTAAATTCTCTGAGATCACCACTGATAGCTTGTCTATCTT 359
Query 363 CCAGACAGTTCGACCTATTCCAGAGCTCTTGATTGTTGGTTGTGGAAGAGACATTCACCC 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CCAGACAGTTCGACCTATTCCAGAGCTCTTGATTGTTGGTTGTGGAAGAGACATTCACCC 419
Query 423 GGTAACTCCCGAGGTCCGTCAGTTTGTCAAGTCCCTTGGCATGAAACTAGAAACAGTTGA 482
|||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 420 GGTAACTCCCGAAGTCCGTCAGTTTGTGAAGTCCCTTGGCATGAAACTTGAAACAGTTGA 479
Query 483 TTCTAGAAATGCTGCATCAACGTACAACATTCTGAATGAAGAAGGAAGAGTCGTTGCTGC 542
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 480 TTCTAGAAATGCTGCATCAACTTACAACATTCTGAATGAAGAAGGAAGAGTCGTTGCTGC 539
Query 543 GGCATTGCTTCCATATGGAGTTACATCCTAAAGAAAACTAACAACTCGA-GCTCTGGCTT 601
||||||||||||||||||||||||||||||||||||||||||||||||| | || |||
Sbjct 540 GGCATTGCTTCCATATGGAGTTACATCCTAAAGAAAACTAACAACTCGAAGTTCCATCTT 599
Query 602 TCTAAACTGTAAATGGTTTTTGAGACCTTCCGAAAATAAACCGAATTTCAT 652
||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 600 TCTAAGCTGTAAATGATTTTTGAGACCTTCCGAAAATAAACCGAATTTCAT 650
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28249081497
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5