BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44530.1
Length=1571
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935391 jgi|Araly1|935391|scaffold_403379.1 2097 0.0
> Ahg935391 jgi|Araly1|935391|scaffold_403379.1
Length=1231
Score = 2097 bits (1135), Expect = 0.0
Identities = 1200/1232 (97%), Gaps = 1/1232 (0%)
Strand=Plus/Plus
Query 192 TCTCTCTCCGGATCCATTTCTCGAACATGGCGTCTATTGTTCAACCATCGCCTACTTTCC 251
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 TCTCTCTCCGGATCCAGTTCTCGAACATGGCGTCTATTGTTCAACCATCGCCTACTTTTC 60
Query 252 CGGCGCTAAATCTCCGGCGTTCTTCTCTGATTCGTCCGCCTTCTTCCGTTCGATTTCCTC 311
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 61 CGGCGCTAAATCTCCGGCGTTCTTCTCTGACTCGTCCTCCTTCTTCCGTTCGATTTCCTC 120
Query 312 TTAAGTGTAACGCGGCGGATCCGTACAAGTTCGACGGCGGAAACTCTGCCGGTTTCCATC 371
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 121 TTAAGTGTAACGCGGCGGATCCGTACAAGTTCGACGGCGGAAACTCCGCCGGTTTCCATC 180
Query 372 TGCTTACTGGCGACACCGTTCCGGCTAGCTTTTCGAGGACACGTTTGGAAGATTCGATTT 431
||||||| |||||||||||||| ||||||||||||||| | ||||||||||||||||| |
Sbjct 181 TGCTTACAGGCGACACCGTTCCCGCTAGCTTTTCGAGGTCTCGTTTGGAAGATTCGATCT 240
Query 432 ATCAGAACACCACACGACTTCGTATCTTTTCCGGCACTGCTAATCCTATTTTGGCTCAGG 491
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ACCAGAACACCACACGACTTCGTATCTTTTCCGGCACTGCTAATCCTATTTTGGCTCAGG 300
Query 492 AGATTTCTTGCTATTTGGGTCTGGACCTTGGGAAAATCAAGATTAAACGCTTTGCTGATG 551
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 301 AGATTTCTTGCTATTTGGGTCTGGAGCTTGGGAAAATCAAGATTAAACGTTTTGCTGATG 360
Query 552 GTGAGATCTATGTTCAGCTACAAGAGAGTGTAAGGGGATGTGATGTGTTCCTTGTACAGC 611
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTGAGATCTATGTTCAGCTGCAAGAGAGTGTAAGGGGATGTGATGTGTTCCTTGTACAGC 420
Query 612 CTACATGCCCACCTGCAAATGAAAACCTTATGGAATTGCTCGTTATGATTGATGCTTGTC 671
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 421 CTACATGCCCACCTGCTAATGAAAACCTTATGGAATTGCTCGTTATGATTGACGCTTGTC 480
Query 672 GGAGAGCATCAGCCAAAACTATCACGGCTGTGATTCCTTACTTTGGTTATGCACGAGCTG 731
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 481 GGAGAGCATCAGCCAAAACCATCACAGCTGTGATTCCTTACTTTGGTTATGCACGAGCTG 540
Query 732 ATAGAAAGACTCAAGGACGTGAATCTATTGCAGCCAAGCTTGTGGCCAATTTGATTACAC 791
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 541 ATAGAAAGACTCAAGGACGTGAATCGATTGCAGCCAAGCTTGTGGCCAATTTGATTACAC 600
Query 792 AGTCTGGTGCAGACCGTGTCCTTGCTTGTGATCTTCACTCCGGACAGTCTATGGGCTACT 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AGTCTGGTGCAGACCGTGTCCTTGCTTGTGATCTTCACTCCGGACAGTCTATGGGCTACT 660
Query 852 TTGATATTCCAGTCGATCATGTTTATGGCCAGCCTGTCATACTTGATTACCTAGCAAGTA 911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TTGATATTCCAGTCGATCATGTTTATGGCCAGCCTGTCATACTTGATTACCTAGCAAGTA 720
Query 912 AGGCCATATCCTCTGAAGATTTGGTGGTAGTTTCACCTGATGTTGGTGGCGTCGCAAGAG 971
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 721 AGGCCATATCCTCTGAAGATTTGGTGGTAGTTTCACCTGACGTTGGTGGCGTTGCAAGAG 780
Query 972 CTCGCGCTTTTGCGAAGAAGTTATCTGATGCACCTTTAGCAATAGTTGATAAAAGACGTC 1031
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CTCGTGCTTTTGCCAAGAAGTTATCTGATGCACCTTTAGCAATAGTTGATAAAAGACGTC 840
Query 1032 ATGGGCACAATGTTGCAGAGGTGATGAACTTAATTGGGGATGTTAAAGGGAAAGTAGCCA 1091
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 841 ATGGGCACAATGTTGCAGAGGTGATGAACTTAATCGGGGATGTTAAGGGGAAAGTAGCCA 900
Query 1092 TAATGGTGGATGACATGATTGACACAGCAGGAACCATAAGCAAAGGTGCGGCTCTGTTAC 1151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TAATGGTGGATGACATGATTGACACAGCAGGAACCATAAGCAAAGGTGCGGCTCTGTTAC 960
Query 1152 ACCAAGAAGGAGCAAGAGAAGTATACGCTTGTACCACTCATGCCGTTTTTAGCCCTCCTG 1211
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 961 ACCAAGAAGGAGCAAGAGAAGTGTACGCTTGTACCACTCATGCCGTTTTTAGCCCTCCTG 1020
Query 1212 CAATCAGTCGACTATCGAGCGGACTGTTTCAAGAGGTGATCATAACCAACACGATTCCAT 1271
|||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 CAATCAGTAGGCTATCGAGTGGACTGTTTCAAGAGGTGATCATAACCAACACGATTCCAT 1080
Query 1272 TGTCAGAGAAGAACTATTTTCCTCAGCTTACAGTTCTCTCAGTAGCAAACCTTCTTGGGG 1331
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 TGTCAGAGCAGAACTATTTTCCTCAGCTTACAGTTCTCTCAGTAGCAAACCTTCTTGGGG 1140
Query 1332 AGACCATATGGCGTGTTCATGATGATTGCTCGGGAGCCATTGAGCCATTTTCGACGTTGG 1391
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1141 AGACCATATGGCGTGTTCATGATGATTGCTCTGGAGCCATTGAGCCATTTTCGACGTTGG 1200
Query 1392 GGATTGATTGAGTGATGGAAAAAGGGTAAAGA 1423
|||||||||||||||||||||| |||||||||
Sbjct 1201 GGATTGATTGAGTGATGGAAAA-GGGTAAAGA 1231
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58849428525
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5