BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44550.1
Length=1473
Score E
Sequences producing significant alignments: (Bits) Value
Ahg346267 jgi|Araly1|346267|fgenesh1_pg.C_scaffold_4002609 2455 0.0
Ahg935393 jgi|Araly1|935393|scaffold_403381.1 2134 0.0
Ahg483586 jgi|Araly1|483586|fgenesh2_kg.4__2646__AT2G44570.1 1133 0.0
> Ahg346267 jgi|Araly1|346267|fgenesh1_pg.C_scaffold_4002609
Length=1473
Score = 2455 bits (1329), Expect = 0.0
Identities = 1425/1471 (97%), Gaps = 8/1471 (1%)
Strand=Plus/Plus
Query 1 ATGTCTCAATTGAAAAATGGATCTTCACAATGCTTATGGACAAGTATTTGCATTGTGTTA 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 1 ATGTCTCAATTGAAAAATGGATCTTCACAATACTTATGGACAAGTATTTGCATGGTGTTA 60
Query 61 ATAGTAATGTCGATGGCTCGTGAAGCTGTCTCTACAAATTATGCAGAAGCTCTCAAAAAC 120
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 61 CTAGTAATGTCGATGGCTCGTGAAGCTGTCTCTACAAATTATGGAGAAGCTCTCAGAAAC 120
Query 121 AGTCTTTTGTATTTCGAAGCTCAACGTTCTGGAAAATTGCCTCCGAACCAAAGAGTTACT 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 121 AGTCTTTTGTATTTCGAAGCTCAACGTTCTGGAAAATTGCCTTCGAACCAAAGAGTTACT 180
Query 181 TGGAGAGGAGATTCTGCTCTTAGAGACGGTTCTGATGCTCATATTGATCTCACCGGAGGG 240
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 181 TGGAGAGGAGATTCTGCTCTTAGAGACGGTTCTGATGCTCATATCGATCTCACCGGTGGG 240
Query 241 TACTATGATGCGGGAGACAACATGAAGTTTGGATTTCCGTTGGCGTTCACGACAACAATG 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TACTATGATGCCGGAGACAACATGAAGTTTGGATTTCCGTTGGCGTTCACGACAACAATG 300
Query 301 CTAGCTTGGAGCAATATAGAGATGGCATCACAGCTTAGGGCCCACCACGAGAAGGGAAAC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTAGCTTGGAGCAATATAGAGATGGCATCACAGCTTAGGGCCCACCACGAGAAGGGAAAC 360
Query 361 GCTCTCAGGGCTCTCAAGTGGGCCACCGATTATCTCATTAAAGCCCATCCTCAGCCTAAT 420
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||
Sbjct 361 TCTCTCAGGGCTCTCAAGTGGGCCACCGATTTTCTCATTAAAGCCCATCCTGAGCCCAAT 420
Query 421 GTCCTGTACGGACAAGTGGGTGAAGGAAACTCGGACCACAAATGCTGGATGAGACCTGAG 480
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 421 GTTCTGTACGGACAAGTGGGTGAGGGAAACTCGGACCACAAATGCTGGATGAGACCTGAG 480
Query 481 GATATGACCACTCCGCGTACTTCATACCGCATCGATGCTCAACATCCAGGTTCTGACCTA 540
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 481 GATATGACCACTCCGCGTACTTCATTTCGCATCGATGCTCAACATCCAGGTTCTGACCTA 540
Query 541 GCAGGTGAGACAGCTGCAGCAATGGCGGCAGCGTCTATCGCCTTTGCACCATCTGATAAA 600
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 541 GCAGGTGAGACAGCTGCAGCAATGGCTGCAGCGTCTATCGCCTTTGCACCATCTGATAAA 600
Query 601 GCCTATG-CCAATATACTCATTGGTCATGCAAAAGATTTATTTGCATTCGCTAAGGCTCA 659
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GCCTATGCCCAA-ATACTCATTGGTCATGCAAAAGATTTATTTGCATTCGCTAAGGCTCA 659
Query 660 CCGTGGAC-TTTACCAAAACTCCATTCCTAACGCGGGTGGCTTCTACGCGAGCAGTGGAT 718
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CCGTGG-CGTTTACCAAAACTCCATTCCTAACGCGGGTGGCTTCTACGCGAGCAGTGGAT 718
Query 719 ATGAAGATGAGTTGCTGTGGGCTGCAGCTTGGCTCCACCGTGCCACCAACGACCAGATTT 778
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 ACGAAGATGAGTTGCTGTGGGCTGCAGCTTGGCTCCACCGTGCCACCAACGACCAGATTT 778
Query 779 ATCTTGATTACCTAACAGAAGCAGAAACAGGAGGTCCAAGGACTGTTTTTGCCTGGGATG 838
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 ATCTTGATTACCTAACACAAGCAGAAACAGGAGGTCCAAGGACTGTTTTTGCCTGGGATG 838
Query 839 ATAAGTTCGTGGGTGCACAAGTCTTGGTCGCCAAGCTAGCACTTGAAGGGAAAGTAGAGA 898
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 839 ATAAGTTCGTGGGTGCACAAGTCTTGGTCGCCAAGCTTGCACTTGAAGGGAAAGTAGAGA 898
Query 899 GCAGTGAACAGATCGTAGAGTACAAGAGTATGGCGGAGCAGTTTATCTGCAACTGTGCTC 958
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 GCAGTGAAGAGATCGTAGAGTACAAGAGTATGGCGGAGCAGTTTATCTGCAACTGTGCTC 958
Query 959 AAAAAGGTGACAACAACGTTAAGAAAACCCCTGGCGGTTTGCTCTACTTCTTGCCGTGGA 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 AAAAAGGTGACAACAACGTTAAGAAAACCCCTGGCGGTTTGCTCTACTTCTTGCCGTGGA 1018
Query 1019 ACAACCTCCAATACACCACAGCCGCTACTTTCGTCCTCTCAGCATATTCTAAATATCTTG 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 ACAACCTCCAATACACCACAGCCGCTACTTTCGTCCTCTCAGCATATTCTAAATATCTTG 1078
Query 1079 AAGCCGCAAAAGCCTCCATCGACTGTCCCGATGGTGCTCTTCAAGCTTCTGATCTTCTCC 1138
|||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||
Sbjct 1079 AAGCCGCAAAAGCCTCCATCAACTGCCCCAATGGTGCTCTTCAAGCTTCTGATCTTCTCC 1138
Query 1139 AAGTCGCTCGTTCCCAGGTTGACTATATACTTGGGTCGAACCCCCAGAAAATGAGCTACA 1198
| |||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||
Sbjct 1139 ACCTCGCTCGTTCCCAGGTAGACTATATACTTGGGTCGAACCCCAAGAACATGAGCTACA 1198
Query 1199 TGGTTGGAGTTGGGACCAATTATCCCAAAAAACCACACCATAGAGCAGCCTCCATAGTAT 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TGGTTGGAGTTGGGACCAATTATCCCAAAAAACCACACCATAGAGCAGCCTCCATAGTAT 1258
Query 1259 CGATCAGACA-GGACAAAACACCAGTGACGTGTAGTGGAGGGTATGA-TAAATGGTATAA 1316
| || | ||| |||||||||||||||||| ||||||||||||| | | | |||||||||
Sbjct 1259 CAAT-ACACAAGGACAAAACACCAGTGACTTGTAGTGGAGGGT-TCAATGCATGGTATAA 1316
Query 1317 CAATCCTGCACCAAACCCTAACGTTTTAGCGGGAGCAGTTGTCGGAGGACCCGACGATAA 1376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 CAATCCTGCACCAAACCCTAACGTTTTAGCGGGAGCAGTTGTCGGAGGACCCGACGATAA 1376
Query 1377 CGATGTTTATGGAGATGAGAGGAGTAATTTCCAGCAAGCTGAGCCTGCGACGGTCACTAC 1436
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 1377 CGATGTTTATGGAGATGAGAGGACTAATTTCCAGCAAGCTGAGCCTGCGACGGTCACTGC 1436
Query 1437 TGCTCCGCTTGTTGGTGTCTTGGCCCTCGTT 1467
|||||||||||||||||||||||||||||||
Sbjct 1437 TGCTCCGCTTGTTGGTGTCTTGGCCCTCGTT 1467
> Ahg935393 jgi|Araly1|935393|scaffold_403381.1
Length=1516
Score = 2134 bits (1155), Expect = 0.0
Identities = 1367/1469 (93%), Gaps = 15/1469 (1%)
Strand=Plus/Plus
Query 1 ATGTCTCAATTGAAAAATGGATCTTCACAATGCTTATGGACAAGTATTTGCATTGTGTTA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 21 ATGTCTCAATTGAAAAATGGATCTTCACAATGCTTATGGACAAGTATTTGCATTGTGTTA 80
Query 61 ATAGTAATGTCGATGGCTCGTGAAGCTGTCTCTACAAATTATGCAGAAGCTCTCAAAAAC 120
||||||||||||| |||||||| |||||||||||||||||||| ||||||||||| |||
Sbjct 81 ATAGTAATGTCGACGGCTCGTGGAGCTGTCTCTACAAATTATGGAGAAGCTCTCACAAAG 140
Query 121 AGTCTTTTGTATTTCGAAGCTCAACGTTCTGGAAAATTGCCTCCGAACCAAAGAGTTACT 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 141 AGTCTTTTGTATTTCGAAGCTCAACGTTCTGGAAAATTGCCTTCGAACCAAAGAGTTACT 200
Query 181 TGGAGAGGAGATTCTGCTCTTAGAGACGGTTCTGATGCTCATATTGATCTCACCGGAGGG 240
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 201 TGGAGAGGAGATTCTGCTCTTAGAGATGGTTCTGATGCTCATGTTGATCTCACCGGAGGG 260
Query 241 TACTATGATGCGGGAGACAACATGAAGTTTGGATTTCCGTTGGCGTTCACGACAACAATG 300
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 261 TACTATGATGCTGGAGACAACATGAAGTTTGGATTTCCGTTGGCGTTCATGACAACAATG 320
Query 301 CTAGCTTGGAGCAATATAGAGATGGCATCACAGCTTAGGGCCCACCACGAGAAGGGAAAC 360
||||||||||||||||||||||||||||||||||||| |||||| || ||| ||| ||||
Sbjct 321 CTAGCTTGGAGCAATATAGAGATGGCATCACAGCTTAAGGCCCATCAGGAGCAGGAAAAC 380
Query 361 GCTCTCAG-GGCTCTCAAGTGGGCCACCGATTATCTCATTAAAGCCCATCCTCAGCCTAA 419
|| || | ||||||||||||||||||||||| ||||||||||||||||||| |||| ||
Sbjct 381 GCCCTT-GCGGCTCTCAAGTGGGCCACCGATTTTCTCATTAAAGCCCATCCTGAGCCCAA 439
Query 420 TGTCCTGTACGGACAAGTGGGTGAAGGAAACTCGGACCACAAATGCTGGATGAGACCTGA 479
|||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 440 TGTCTTGTACGGACAAGTGGGTGACGGAAACTCGGACCACGGATGCTGGATGAGACCTGA 499
Query 480 GGATATGACCACTCCGCGTACTTCATACCGCATCGATGCTCAACATCCAGGTTCTGACCT 539
||||||||||||||| ||| |||||| ||||| |||||||||||||||||||| |||||
Sbjct 500 GGATATGACCACTCCACGTCCTTCATTTCGCATTGATGCTCAACATCCAGGTTCAGACCT 559
Query 540 AGCAGGTGAGACAGCTGCAGCAATGGCGGCAGCGTCTATCGCCTTTGCACCATCTGATAA 599
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
Sbjct 560 AGCAGGTGAGACAGCTGCAGCAATGGCTGCAGCGTCTATTGCCTTTGCACCATCTGATGA 619
Query 600 AGCCTATGCCAATATACTCATTGGTCATGCAAAAGATTTATTTGCATTCGCTAAGGC-TC 658
|||||||||||| ||||| ||||||||||| ||||||||||||| |||||||||||| |
Sbjct 620 AGCCTATGCCAAAATACTTATTGGTCATGCGAAAGATTTATTTGAATTCGCTAAGGCGT- 678
Query 659 ACCGTGG-ACTTTACCAAAACTCCATTCCTAACGCGGGTGGCTTCTACGCGAGCAGTGGA 717
||| ||| | ||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 679 ACCCTGGCA-TTTACCAAAACTCCATTACTAACGCCGGTGGCTTCTACGCGAGCAGTGGA 737
Query 718 TATGAAGATGAGTTGCTGTGGGCTGCAGCTTGGCTCCACCGTGCCACCAACGACCAGATT 777
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 TACGAAGATGAGTTGTTGTGGGCTGCAGCTTGGCTCCACCGTGCCACCAACGACCAGATT 797
Query 778 TATCTTGATTACCTAACAGAAGCA---GAAACAGGAGGTCCAAGGACTGTTTTTGCCTGG 834
||||||||||| |||||| | ||| | ||||||||||||||||||||||||||||||
Sbjct 798 TATCTTGATTATCTAACACAGGCATCTGGTACAGGAGGTCCAAGGACTGTTTTTGCCTGG 857
Query 835 GATGATAAGTTCGTGGGTGCACAAGTCTTGGTCGCCAAGCTAGCACTTGAAGGGAAAGTA 894
||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 858 GATGATAAGTTTGTGGGTGCACAAGTATTGGTCGCCAAGCTTGCACTTGAAGGGAAAGTA 917
Query 895 GAGAGCAGTG-AACAGATCGTAGAGTACAAGAGTATGGCGGAGCAGTTTATCTGCAACTG 953
|||| || || || |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 918 GAGAACAATGGAA-AGATCGCAGAGTACAAGAGTATGGCGGAGCAGTTTATCTGCAACTG 976
Query 954 TGCTCAAAAAGGTGACAACAACGTTAAGAAAACCCCTGGCGGTTTGCTCTACTTCTTGCC 1013
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 977 TGCTCAAAAAGGTTCCAACAACGTTAAGAAAACCCCTGGCGGTTTGCTCTACTTCTTGCC 1036
Query 1014 GTGGAACAACCTCCAATACACCACAGCCGCTACTTTCGTCCTCTCAGCATATTCTAAATA 1073
|||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||
Sbjct 1037 GTGGAACAACCTCCAATACACCGCAGCCGCTTCTTTCGTCCTCTCTGCATATTCTAAATA 1096
Query 1074 TCTTGAAGCCGCAAAAGCCTCCATCGACTGTCCCGATGGTGCTCTTCAAGCTTCTGATCT 1133
|||||||| |||||||||||||||| | |||||| |||||||||||||||||||||||||
Sbjct 1097 TCTTGAAGACGCAAAAGCCTCCATCCAATGTCCCAATGGTGCTCTTCAAGCTTCTGATCT 1156
Query 1134 TCTCCAAGTCGCTCGTTCCCAGGTTGACTATATACTTGGGTCGAACCCCCAGAAAATGAG 1193
|||| | || ||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1157 TCTCGACCTCACTCGTTCCCAGGTAGACTATATACTTGGGTCGAACCCCCAGAACATGAG 1216
Query 1194 CTACATGGTTGGAGTTGGGACCAATTATCCCAAAAAACCACACCATAGAGCAGCCTCCAT 1253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1217 CTACATGGTTGGAGTTGGGACCAATTATCCCAAAAAACCACACCATAGAGCAGCCTCTAT 1276
Query 1254 AGTATCGATCAGACA-GGACAAAACACCAGTGACGTGTAGTGGAGGGTAT-GATAAATGG 1311
||||||||||| || |||||||||||||||||||||||||| ||| | | ||| ||||
Sbjct 1277 AGTATCGATCAC-CAAGGACAAAACACCAGTGACGTGTAGTGAAGGAT-TCGATGCATGG 1334
Query 1312 TATAACAATCCTGCACCAAACCCTAACGTTTTAGCGGGAGCAGTTGTCGGAGGACCCGAC 1371
| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 1335 TTTAACAATCCTGCACCAAACCCTAACGTTTTAATGGGAGCAGTTGTCGGAGGACCCAAC 1394
Query 1372 GATAACGATGTTTATGGAGATGAGAGGAGTAATTTCCAGCAAGCTGAGCCTGCGACGGTC 1431
|||||||||||||||||||||||||||| | ||| |||||| |||||||||||| ||| |
Sbjct 1395 GATAACGATGTTTATGGAGATGAGAGGACTGATTACCAGCATGCTGAGCCTGCGCCGGCC 1454
Query 1432 ACTACTGCTCCGCTTGTTGGTGTCTTGGC 1460
||| ||||||| ||||||||||||||||
Sbjct 1455 ACTGCTGCTCCATTTGTTGGTGTCTTGGC 1483
> Ahg483586 jgi|Araly1|483586|fgenesh2_kg.4__2646__AT2G44570.1
Length=1615
Score = 1133 bits (613), Expect = 0.0
Identities = 1143/1392 (82%), Gaps = 63/1392 (5%)
Strand=Plus/Plus
Query 42 AAGTATTTGCATTGTGTTA--A-TAGTAATGTCGATGGCTCGTGAAGC--TGTCT-C--- 92
||| ||||||||||||||| | || || | ||||| |||||| ||| | ||| |
Sbjct 39 AAGCATTTGCATTGTGTTACTATTATTATTATCGATTACTCGTGGAGCAATTTCTGCAAA 98
Query 93 TACAAATTATGCAGAAGCTCTCA-AAAACAGTCTTTTGTATTTCGAAGCTCAACGTTCTG 151
| ||||||||| ||||||||||| ||| |||||||||||||| ||||||||||| ||||
Sbjct 99 TTCAAATTATGGAGAAGCTCTCACGAAA-AGTCTTTTGTATTTTGAAGCTCAACGCTCTG 157
Query 152 GAAAATTGCC-TCCGAACCAAAGAGTTACTTGGAGAGGAGATTCTGCTCTTAGAGACGGT 210
|||||||||| | |||||||||||||||||||||||||||||||||| || ||||| |||
Sbjct 158 GAAAATTGCCAT-CGAACCAAAGAGTTACTTGGAGAGGAGATTCTGCACTCAGAGATGGT 216
Query 211 TCTGATGCTCATATTGATCTCACCGGAGGGTACTATGATGCGGGAGACAACATGAAGTTT 270
||||||||||||||||||||||| |||||||| || ||||| ||||| || |||||||||
Sbjct 217 TCTGATGCTCATATTGATCTCACTGGAGGGTATTACGATGCCGGAGATAATATGAAGTTT 276
Query 271 GGATTTCCGTTGGCGTTCACGACAACAATGCTAGCTTGGAGCAATATAGAGATGGCATCA 330
|||||||| |||||||||||||||||||||||||||||||| | | ||||||||| ||||
Sbjct 277 GGATTTCCTTTGGCGTTCACGACAACAATGCTAGCTTGGAGTAGTGTAGAGATGGAATCA 336
Query 331 CAGCTTAGGGCCCACCACGAGAAGGGAAACGCTCTCAG-GGCTCTCAAGTGGGCCACCGA 389
||||||| ||||||||| ||| | | |||| | ||| | |||||||| ||||||||| ||
Sbjct 337 CAGCTTAAGGCCCACCATGAGCACGAAAACACCCTC-GCGGCTCTCAGGTGGGCCACTGA 395
Query 390 TTATCTCATTAAAGCCCATCCTCAGCCTAATGTCCTGTACGGACAAGTGGGTGAAGGAAA 449
|||||||||||||||||||||| |||| |||||||||||||||||||||||||| || ||
Sbjct 396 TTATCTCATTAAAGCCCATCCTGAGCCCAATGTCCTGTACGGACAAGTGGGTGATGGCAA 455
Query 450 CTCGGACCACAAATGCTGGATGAGACCTGAGGATATGACCACTCCGCGTACTTCATACCG 509
|| ||| || |||||||||||||| ||||||||||| |||||||| ||||||||||
Sbjct 456 CTTGGATCATGCCTGCTGGATGAGACCCGAGGATATGACTACTCCGCGCCCTTCATACCG 515
Query 510 CATCGATGCTCAACATCCAGGTTCTGACCTAGCAGGTGAGACAGCTGCAGCAATGGCGGC 569
||| |||||||| ||||| ||| |||| || || ||||||||||| ||||| ||||| ||
Sbjct 516 CATTGATGCTCAGCATCCTGGTGCTGATCTCGCGGGTGAGACAGCAGCAGCGATGGCTGC 575
Query 570 AGCGTCTATCGCCTTTGCACCATCTGATAAAGCCTATGCCAATATACTCATTGGTCATGC 629
||| ||| | |||||||| ||||||||| |||||| ||||| | ||| |||||||||||
Sbjct 576 AGCTTCTTTGGCCTTTGCGCCATCTGATGCAGCCTACGCCAAAACACTTATTGGTCATGC 635
Query 630 AAAAGATTTATTTGCATTCGCTAAGGC-TCACCGTGGACTTTACCAAAACTCCATTCCTA 688
||||||| |||||| ||||||||||| | ||| ||| | || || ||||||||||||
Sbjct 636 AAAAGATCTATTTGAATTCGCTAAGGAAT-ACCCTGGGGTCTATCATTACTCCATTCCTA 694
Query 689 ACGCGGGTGGCTTCTACGCGAGCAGTGGATATGAAGATGAGTTGCTGTGGGCTGCAGCTT 748
||||||||||||| ||| | || ||||| || ||||||||||| ||||||| || ||||
Sbjct 695 ACGCGGGTGGCTTTTACCCTAGTAGTGGTTACGAAGATGAGTTATTGTGGGCCGCTGCTT 754
Query 749 GGCTCCACCGTGCCACCA-ACGACCAGATTTATCTTGATTACCTAACAGAAGCAGA-AAC 806
|||| ||||||||||| | ||||||| ||||||||||| ||||||||||| ||
Sbjct 755 GGCTTCACCGTGCCACTGGA-GACCAGACATATCTTGATTATCTAACAGAAGCTTCTAAT 813
Query 807 A-GG-AGGTCCAAGGA-CTGTTTTTGCCTGGGATGATAAGTTCGTGGGTGCACAAGTCTT 863
| || |||| | ||| | ||||| || ||||| ||||||||| |||| |||||||||||
Sbjct 814 AAGGGAGGTGCGAGGTTC-GTTTTCGCGTGGGACGATAAGTTCTTGGGAGCACAAGTCTT 872
Query 864 GGTCGCCAAGCTAGCACTTGAAGGGAAAGTAGA-GAGC-A-GTGAACAGATCG-TAGAGT 919
||| |||||||| | ||||||| ||||| || || | | | ||| ||| | |||| |
Sbjct 873 GGTAGCCAAGCTTGTTTTTGAAGGAAAAGT-GAAGAACGAAGGGAA--GAT-GATAGAAT 928
Query 920 ACAAGAGTATGGCGGAGCAGTTTATCTGCAACTGTGCTCAAAAAGGTGACAACAACGTTA 979
||||||||||||| ||||| || |||||||||||||||||||| ||| |||||||||||
Sbjct 929 ACAAGAGTATGGCAGAGCAATTCATCTGCAACTGTGCTCAAAAGGGTTTCAACAACGTTA 988
Query 980 AGAAA-ACCCCTGGCGGTTTGCTCTACTTCTTG-CCGTGGAACAACCTCCAATACACCA- 1036
| ||| || || || |||||||||| || ||| || ||| |||||||||||||||| |
Sbjct 989 A-AAAGACTCCAGGAGGTTTGCTCTGGTTTTTGTCC-TGGGACAACCTCCAATACAC-AG 1045
Query 1037 C-AGCCGCTACTTTCGTCCTCTCAGC-A-T-ATTCTAAATATCTTGAAGCCGCA-AAAGC 1091
| | ||||| |||||| ||| | ||| | | || ||||||| || ||||| ||| ||| |
Sbjct 1046 CCA-CCGCTTCTTTCG-CCT-T-AGCCACTTATGCTAAATACCTCGAAGCTGCACAAA-C 1100
Query 1092 CTCCAT-CGACTGTCCCGATGGTGCT--C-TTCAAGCTTCTGATCTTCTCCAAGTCGCTC 1147
|| || | | || ||| |||||| | | ||||||||| ||||||||| || | ||||
Sbjct 1101 ATCGATTCAA-TGCCCCAATGGTGGTGTCCTTCAAGCTTATGATCTTCTTAAACTAGCTC 1159
Query 1148 GTTCCCAGGTTGACTATATACTTGGGTCGAACCCCCAGAAAATGAGCTACATGGTTGGAG 1207
| ||||||| ||||| ||||||||||| |||||| |||| ||||||||||||||||||
Sbjct 1160 GGGCCCAGGTAGACTACATACTTGGGTCAAACCCCAAGAACATGAGCTACATGGTTGGA- 1218
Query 1208 TT-GGGACCAATTATCCCAAAAAACCACACCATAGAGCAGCCTCCATAGTATCGATCA-G 1265
| |||||||||||||| |||| |||||||||||||| |||||| ||||| || |||| |
Sbjct 1219 TACGGGACCAATTATCCTAAAAGACCACACCATAGAGGAGCCTCTATAGTGTCAATCAAG 1278
Query 1266 ACAGGA-CAAAACACCAGTGACGTGTAGTGGAGGGTATGATAAAT-GGTATAACAATCCT 1323
| | || | || ||| ||||| || | |||||||| ||| | | |||| ||||| |||
Sbjct 1279 A-ATGATCCTAA-ACCGGTGACATGCAATGGAGGGTTTGA-AGCTTGGTACAACAACCCT 1335
Query 1324 GCACCAAACCCTAACGTTTTAGCGGGAGCAGTTGTCGGAGGACCCGACGA-TAACGATGT 1382
||| || ||||| ||||| | |||||| |||| || ||||| ||||| || |||||
Sbjct 1336 AAACCGAATCCTAATGTTTTGGTTGGAGCAATTGTAGGTGGACCGGACGAGTA-CGATGC 1394
Query 1383 TTATGGAGATGA 1394
||| ||||||||
Sbjct 1395 TTACGGAGATGA 1406
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55116584515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5