BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44560.1
Length=1663
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935393 jgi|Araly1|935393|scaffold_403381.1 2501 0.0
Ahg346267 jgi|Araly1|346267|fgenesh1_pg.C_scaffold_4002609 2135 0.0
Ahg483586 jgi|Araly1|483586|fgenesh2_kg.4__2646__AT2G44570.1 1208 0.0
> Ahg935393 jgi|Araly1|935393|scaffold_403381.1
Length=1516
Score = 2501 bits (1354), Expect = 0.0
Identities = 1465/1519 (96%), Gaps = 6/1519 (0%)
Strand=Plus/Plus
Query 34 AAAGATTATTTaaaaaaaCGATGTCTCAACTGAAAATTGGATCTTCACAATGCTTATGGA 93
|||||||| || ||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 1 AAAGATTAATTGAAAAAACGATGTCTCAATTGAAAAATGGATCTTCACAATGCTTATGGA 60
Query 94 CAAGTATTTGCATTGTGTTATTTGTATTGTCGATGGCTCGTGGAGCTGTCTCTAGAAATT 153
|||||||||||||||||||| | ||| |||||| |||||||||||||||||||| |||||
Sbjct 61 CAAGTATTTGCATTGTGTTAATAGTAATGTCGACGGCTCGTGGAGCTGTCTCTACAAATT 120
Query 154 ATGGAGACGCTCTCACAAAGAGTCTTTTGTATTTCGAAGCTCAACGTTCTGGAAAATTGC 213
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATGGAGAAGCTCTCACAAAGAGTCTTTTGTATTTCGAAGCTCAACGTTCTGGAAAATTGC 180
Query 214 CTTCGAACCAAAGAGTTACTTGGAGAGGAGATTCTGCGCTTAGAGACGGTTCTGATGCTC 273
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 181 CTTCGAACCAAAGAGTTACTTGGAGAGGAGATTCTGCTCTTAGAGATGGTTCTGATGCTC 240
Query 274 ATGTTGATCTAACCGGAGGGTACTATGATGCCGGAGACAACATGAAGTTTGGATTTCCGT 333
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 241 ATGTTGATCTCACCGGAGGGTACTATGATGCTGGAGACAACATGAAGTTTGGATTTCCGT 300
Query 334 TGGCCTTCTTTACAACAATGCTAGCTTGGAGCAATATAGAGATGGCAACACAGCTTAAGG 393
|||| ||| | |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 301 TGGCGTTCATGACAACAATGCTAGCTTGGAGCAATATAGAGATGGCATCACAGCTTAAGG 360
Query 394 CCCATCAAGAGCAAGAAAACGCCCTCGCGGCTCTCAAGTGGGCCACCGATTTTCTCATTA 453
||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 361 CCCATCAGGAGCAGGAAAACGCCCTTGCGGCTCTCAAGTGGGCCACCGATTTTCTCATTA 420
Query 454 AAGCCCATCCTGAGCCCAATGTCTTGTACGGACAGGTGGGCGATGGAAACTCGGACCAC- 512
|||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||
Sbjct 421 AAGCCCATCCTGAGCCCAATGTCTTGTACGGACAAGTGGGTGACGGAAACTCGGACCACG 480
Query 513 GAGTGCTGGATGAGGCCTGAGGATATGACAACTCCACGTCCTTCATTTCGCATTGATGCT 572
|| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 481 GA-TGCTGGATGAGACCTGAGGATATGACCACTCCACGTCCTTCATTTCGCATTGATGCT 539
Query 573 CAACATCCAGGTTCTGACCTAGCAGGTGAGACAGCAGCAGCAATGGCTGCTGCGTCTATC 632
|||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 540 CAACATCCAGGTTCAGACCTAGCAGGTGAGACAGCTGCAGCAATGGCTGCAGCGTCTATT 599
Query 633 GCCTTTGCACCATCTGATGAAGCCTATGCCCAAATACTCATTGGTCATGCGAAAGAATTA 692
|||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||
Sbjct 600 GCCTTTGCACCATCTGATGAAGCCTATGCCAAAATACTTATTGGTCATGCGAAAGATTTA 659
Query 693 TTTGAATTCGCTAAGGCGTACCCTGGCATTTACCAAAACTCCATTACTAACGCGGGTGGC 752
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 660 TTTGAATTCGCTAAGGCGTACCCTGGCATTTACCAAAACTCCATTACTAACGCCGGTGGC 719
Query 753 TTCTACGCGAGCAGTGGATACGAAGATGAGTTGTTATGGGCTGCAGCTTGGCTCCACCGT 812
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 720 TTCTACGCGAGCAGTGGATACGAAGATGAGTTGTTGTGGGCTGCAGCTTGGCTCCACCGT 779
Query 813 GCCACCAACGACCAGATTTATCTTGATTATCTAACACAAGCATCTGGTACAGGAGGTCCG 872
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 780 GCCACCAACGACCAGATTTATCTTGATTATCTAACACAGGCATCTGGTACAGGAGGTCCA 839
Query 873 AGGACTGCTTTTT-CCTGGGATGATAAGTTCGTGGGTGCACAAGTCTTGGTCGCCAAGCT 931
||||||| ||||| |||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 840 AGGACTG-TTTTTGCCTGGGATGATAAGTTTGTGGGTGCACAAGTATTGGTCGCCAAGCT 898
Query 932 TGCACTTGAAGGGAAAGTAGAGAGCAATGGAAAGATCGCAGAGTACAAGAGTATGGCAGA 991
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 899 TGCACTTGAAGGGAAAGTAGAGAACAATGGAAAGATCGCAGAGTACAAGAGTATGGCGGA 958
Query 992 GCAGTTTATCTGCAACTGTGCTCAAAAAGGTTCCAACAACGTTAAGAAAACCCCTGGCGG 1051
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 GCAGTTTATCTGCAACTGTGCTCAAAAAGGTTCCAACAACGTTAAGAAAACCCCTGGCGG 1018
Query 1052 TTTGCTCTACTTCTTGCCGTGGAACAACCTCCAATACACCACAGCCGCTACTTTCGTCCT 1111
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1019 TTTGCTCTACTTCTTGCCGTGGAACAACCTCCAATACACCGCAGCCGCTTCTTTCGTCCT 1078
Query 1112 CTCAGCATATTCTAAATATCTT-ACAGACGCAAAAGCCTCCATCCAATGTCCCAATGGTG 1170
||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1079 CTCTGCATATTCTAAATATCTTGA-AGACGCAAAAGCCTCCATCCAATGTCCCAATGGTG 1137
Query 1171 CTCTTCAAGCTTCTGATCTTCTCGACCTCGCTCGTTCCCAGGTAGACTATATACTTGGGT 1230
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1138 CTCTTCAAGCTTCTGATCTTCTCGACCTCACTCGTTCCCAGGTAGACTATATACTTGGGT 1197
Query 1231 CGAACCCCCAGAACATGAGCTACATGGTTGGAGTTGGGACCAATTATCCCAAAAAACCAC 1290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 CGAACCCCCAGAACATGAGCTACATGGTTGGAGTTGGGACCAATTATCCCAAAAAACCAC 1257
Query 1291 ACCATAGAGCAGCCTCTATTGTATCGATCACCAAGGACAAAACACCAGTGACGTGTAGTG 1350
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 ACCATAGAGCAGCCTCTATAGTATCGATCACCAAGGACAAAACACCAGTGACGTGTAGTG 1317
Query 1351 AAGGATTCGATGCATGGTTTAACAATCCTGCACCAAATCCTAACGTTTTAATGGGAGCAG 1410
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1318 AAGGATTCGATGCATGGTTTAACAATCCTGCACCAAACCCTAACGTTTTAATGGGAGCAG 1377
Query 1411 TTGTCGGAGGACCCAACGATAACGATGTTTATGGAGATGAGAGGACTGATTACCAGCATG 1470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 TTGTCGGAGGACCCAACGATAACGATGTTTATGGAGATGAGAGGACTGATTACCAGCATG 1437
Query 1471 CTGAGCCTGCTCCGGCCACTGCTGCTCCATTTGTTGGTGTCTTGGCGGCCGTTGCTTAAT 1530
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 CTGAGCCTGCGCCGGCCACTGCTGCTCCATTTGTTGGTGTCTTGGCGGCCGTTGCTTAAT 1497
Query 1531 CTTTCTCTTTGTTTTGCAA 1549
|||||||||||||||||||
Sbjct 1498 CTTTCTCTTTGTTTTGCAA 1516
> Ahg346267 jgi|Araly1|346267|fgenesh1_pg.C_scaffold_4002609
Length=1473
Score = 2135 bits (1156), Expect = 0.0
Identities = 1380/1486 (93%), Gaps = 23/1486 (2%)
Strand=Plus/Plus
Query 54 ATGTCTCAACTGAAAATTGGATCTTCACAATGCTTATGGACAAGTATTTGCATTGTGTTA 113
||||||||| |||||| |||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 1 ATGTCTCAATTGAAAAATGGATCTTCACAATACTTATGGACAAGTATTTGCATGGTGTTA 60
Query 114 TTTGTATTGTCGATGGCTCGTGGAGCTGTCTCTAGAAATTATGGAGACGCTCTCACAAAG 173
| ||| ||||||||||||||| ||||||||||| |||||||||||| ||||||| |||
Sbjct 61 CTAGTAATGTCGATGGCTCGTGAAGCTGTCTCTACAAATTATGGAGAAGCTCTCAGAAAC 120
Query 174 AGTCTTTTGTATTTCGAAGCTCAACGTTCTGGAAAATTGCCTTCGAACCAAAGAGTTACT 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGTCTTTTGTATTTCGAAGCTCAACGTTCTGGAAAATTGCCTTCGAACCAAAGAGTTACT 180
Query 234 TGGAGAGGAGATTCTGCGCTTAGAGACGGTTCTGATGCTCATGTTGATCTAACCGGAGGG 293
||||||||||||||||| |||||||||||||||||||||||| | ||||| ||||| |||
Sbjct 181 TGGAGAGGAGATTCTGCTCTTAGAGACGGTTCTGATGCTCATATCGATCTCACCGGTGGG 240
Query 294 TACTATGATGCCGGAGACAACATGAAGTTTGGATTTCCGTTGGCCTTCTTTACAACAATG 353
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 241 TACTATGATGCCGGAGACAACATGAAGTTTGGATTTCCGTTGGCGTTCACGACAACAATG 300
Query 354 CTAGCTTGGAGCAATATAGAGATGGCAACACAGCTTAAGGCCCATCAAGAGCAA-GAAAA 412
||||||||||||||||||||||||||| ||||||||| |||||| || ||| || | |||
Sbjct 301 CTAGCTTGGAGCAATATAGAGATGGCATCACAGCTTAGGGCCCACCACGAG-AAGGGAAA 359
Query 413 CGCCCTC-GCGGCTCTCAAGTGGGCCACCGATTTTCTCATTAAAGCCCATCCTGAGCCCA 471
| | ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CTCTCTCAG-GGCTCTCAAGTGGGCCACCGATTTTCTCATTAAAGCCCATCCTGAGCCCA 418
Query 472 ATG-TCTTGTACGGACAGGTGGGCGATGGAAACTCGGACCACGAGTGCTGGATGAGGCCT 530
||| || |||||||||| ||||| || ||||||||||||||| | ||||||||||| |||
Sbjct 419 ATGTTC-TGTACGGACAAGTGGGTGAGGGAAACTCGGACCACAAATGCTGGATGAGACCT 477
Query 531 GAGGATATGACAACTCCACGTCCTTCATTTCGCATTGATGCTCAACATCCAGGTTCTGAC 590
||||||||||| ||||| ||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 478 GAGGATATGACCACTCCGCGTACTTCATTTCGCATCGATGCTCAACATCCAGGTTCTGAC 537
Query 591 CTAGCAGGTGAGACAGCAGCAGCAATGGCTGCTGCGTCTATCGCCTTTGCACCATCTGAT 650
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 538 CTAGCAGGTGAGACAGCTGCAGCAATGGCTGCAGCGTCTATCGCCTTTGCACCATCTGAT 597
Query 651 GAAGCCTATGCCCAAATACTCATTGGTCATGCGAAAGAATTATTTGAATTCGCTAAGGCG 710
||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||
Sbjct 598 AAAGCCTATGCCCAAATACTCATTGGTCATGCAAAAGATTTATTTGCATTCGCTAAGGC- 656
Query 711 T-ACCCTGGCATTTACCAAAACTCCATTACTAACGCGGGTGGCTTCTACGCGAGCAGTGG 769
| ||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 657 TCACCGTGGCGTTTACCAAAACTCCATTCCTAACGCGGGTGGCTTCTACGCGAGCAGTGG 716
Query 770 ATACGAAGATGAGTTGTTATGGGCTGCAGCTTGGCTCCACCGTGCCACCAACGACCAGAT 829
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 717 ATACGAAGATGAGTTGCTGTGGGCTGCAGCTTGGCTCCACCGTGCCACCAACGACCAGAT 776
Query 830 TTATCTTGATTATCTAACACAAGCATCTGGTACAGGAGGTCCGAGGACTGCTTTTT-CCT 888
|||||||||||| |||||||||||| | ||||||||||| ||||||| ||||| |||
Sbjct 777 TTATCTTGATTACCTAACACAAGCA---GAAACAGGAGGTCCAAGGACTG-TTTTTGCCT 832
Query 889 GGGATGATAAGTTCGTGGGTGCACAAGTCTTGGTCGCCAAGCTTGCACTTGAAGGGAAAG 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 GGGATGATAAGTTCGTGGGTGCACAAGTCTTGGTCGCCAAGCTTGCACTTGAAGGGAAAG 892
Query 949 TAGAGAGCAATGGAA-AGATCGCAGAGTACAAGAGTATGGCAGAGCAGTTTATCTGCAAC 1007
||||||||| | ||| |||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 893 TAGAGAGCAGT-GAAGAGATCGTAGAGTACAAGAGTATGGCGGAGCAGTTTATCTGCAAC 951
Query 1008 TGTGCTCAAAAAGGTTCCAACAACGTTAAGAAAACCCCTGGCGGTTTGCTCTACTTCTTG 1067
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 TGTGCTCAAAAAGGTGACAACAACGTTAAGAAAACCCCTGGCGGTTTGCTCTACTTCTTG 1011
Query 1068 CCGTGGAACAACCTCCAATACACCACAGCCGCTACTTTCGTCCTCTCAGCATATTCTAAA 1127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 CCGTGGAACAACCTCCAATACACCACAGCCGCTACTTTCGTCCTCTCAGCATATTCTAAA 1071
Query 1128 TATCTT-ACAGACGCAAAAGCCTCCATCCAA-TGTCCCAATGGTGCTCTTCAAGCTTCTG 1185
|||||| | || |||||||||||||||| || || |||||||||||||||||||||||||
Sbjct 1072 TATCTTGA-AGCCGCAAAAGCCTCCATC-AACTGCCCCAATGGTGCTCTTCAAGCTTCTG 1129
Query 1186 ATCTTCTCGACCTCGCTCGTTCCCAGGTAGACTATATACTTGGGTCGAACCCCCAGAACA 1245
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1130 ATCTTCTCCACCTCGCTCGTTCCCAGGTAGACTATATACTTGGGTCGAACCCCAAGAACA 1189
Query 1246 TGAGCTACATGGTTGGAGTTGGGACCAATTATCCCAAAAAACCACACCATAGAGCAGCCT 1305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1190 TGAGCTACATGGTTGGAGTTGGGACCAATTATCCCAAAAAACCACACCATAGAGCAGCCT 1249
Query 1306 CTATTGTATCGAT-CACCAAGGACAAAACACCAGTGACGTGTAGTGAAGGATTCGATGCA 1364
| || ||||| || ||| |||||||||||||||||||| ||||||| ||| ||| |||||
Sbjct 1250 CCATAGTATCAATACAC-AAGGACAAAACACCAGTGACTTGTAGTGGAGGGTTCAATGCA 1308
Query 1365 TGGTTTAACAATCCTGCACCAAATCCTAACGTTTTAATGGGAGCAGTTGTCGGAGGACCC 1424
|||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 1309 TGGTATAACAATCCTGCACCAAACCCTAACGTTTTAGCGGGAGCAGTTGTCGGAGGACCC 1368
Query 1425 AACGATAACGATGTTTATGGAGATGAGAGGACTGATTACCAGCATGCTGAGCCTGCTCCG 1484
|||||||||||||||||||||||||||||||| ||| |||||| ||||||||||| ||
Sbjct 1369 GACGATAACGATGTTTATGGAGATGAGAGGACTAATTTCCAGCAAGCTGAGCCTGCGACG 1428
Query 1485 GCCACTGCTGCTCCATTTGTTGGTGTCTTGGCGGC-CGTTGCTTAA 1529
| |||||||||||| |||||||||||||||| | ||||||||||
Sbjct 1429 GTCACTGCTGCTCCGCTTGTTGGTGTCTTGGCC-CTCGTTGCTTAA 1473
> Ahg483586 jgi|Araly1|483586|fgenesh2_kg.4__2646__AT2G44570.1
Length=1615
Score = 1208 bits (654), Expect = 0.0
Identities = 1210/1471 (82%), Gaps = 68/1471 (5%)
Strand=Plus/Plus
Query 95 AAGTATTTGCATTGTGTTA-T-TT-GTATTGTCGATGGCTCGTGGAGC--TGTCT-C--- 145
||| ||||||||||||||| | || |||| ||||| |||||||||| | ||| |
Sbjct 39 AAGCATTTGCATTGTGTTACTATTATTATTATCGATTACTCGTGGAGCAATTTCTGCAAA 98
Query 146 TAGAAATTATGGAGACGCTCTCAC-AAAGAGTCTTTTGTATTTCGAAGCTCAACGTTCTG 204
| |||||||||||| |||||||| ||| |||||||||||||| ||||||||||| ||||
Sbjct 99 TTCAAATTATGGAGAAGCTCTCACGAAA-AGTCTTTTGTATTTTGAAGCTCAACGCTCTG 157
Query 205 GAAAATTGCCTTCGAACCAAAGAGTTACTTGGAGAGGAGATTCTGCGCTTAGAGACGGTT 264
|||||||||| ||||||||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 158 GAAAATTGCCATCGAACCAAAGAGTTACTTGGAGAGGAGATTCTGCACTCAGAGATGGTT 217
Query 265 CTGATGCTCATGTTGATCTAACCGGAGGGTACTATGATGCCGGAGACAACATGAAGTTTG 324
||||||||||| ||||||| || |||||||| || ||||||||||| || ||||||||||
Sbjct 218 CTGATGCTCATATTGATCTCACTGGAGGGTATTACGATGCCGGAGATAATATGAAGTTTG 277
Query 325 GATTTCCGTTGGCCTTCTTTACAACAATGCTAGCTTGGAGCAATATAGAGATGGCAA-CA 383
||||||| ||||| ||| |||||||||||||||||||| | | ||||||||| || ||
Sbjct 278 GATTTCCTTTGGCGTTCACGACAACAATGCTAGCTTGGAGTAGTGTAGAGATGG-AATCA 336
Query 384 CAGCTTAAGGCCCATCAAGAGCAAGAAAACGCCCTCGCGGCTCTCAAGTGGGCCACCGAT 443
|||||||||||||| || ||||| |||||| ||||||||||||||| ||||||||| |||
Sbjct 337 CAGCTTAAGGCCCACCATGAGCACGAAAACACCCTCGCGGCTCTCAGGTGGGCCACTGAT 396
Query 444 TTTCTCATTAAAGCCCATCCTGAGCCCAATGTCTTGTACGGACAGGTGGGCGATGGAAAC 503
| ||||||||||||||||||||||||||||||| |||||||||| ||||| ||||| |||
Sbjct 397 TATCTCATTAAAGCCCATCCTGAGCCCAATGTCCTGTACGGACAAGTGGGTGATGGCAAC 456
Query 504 TCGGACCACGAGTGCTGGATGAGGCCTGAGGATATGACAACTCCACGTCCTTCATTTCGC 563
| ||| || | ||||||||||| || ||||||||||| ||||| || ||||||| |||
Sbjct 457 TTGGATCATGCCTGCTGGATGAGACCCGAGGATATGACTACTCCGCGCCCTTCATACCGC 516
Query 564 ATTGATGCTCAACATCCAGGTTCTGACCTAGCAGGTGAGACAGCAGCAGCAATGGCTGCT 623
||||||||||| ||||| ||| |||| || || ||||||||||||||||| ||||||||
Sbjct 517 ATTGATGCTCAGCATCCTGGTGCTGATCTCGCGGGTGAGACAGCAGCAGCGATGGCTGCA 576
Query 624 GCGTCTATCGCCTTTGCACCATCTGATGAAGCCTATGCCCAAATACTCATTGGTCATGCG 683
|| ||| | |||||||| |||||||||| |||||| ||| ||| ||| |||||||||||
Sbjct 577 GCTTCTTTGGCCTTTGCGCCATCTGATGCAGCCTACGCCAAAACACTTATTGGTCATGCA 636
Query 684 AAAGAAT-TATTTGAATTCGCTAAGGCGTACCCTGGCATTTACCAAAACTCCATTACTAA 742
||||| | |||||||||||||||||| |||||||| | || || |||||||| ||||
Sbjct 637 AAAGA-TCTATTTGAATTCGCTAAGGAATACCCTGGGGTCTATCATTACTCCATTCCTAA 695
Query 743 CGCGGGTGGCTTCTACGCGAGCAGTGGATACGAAGATGAGTTGTTATGGGCTGCAGCTTG 802
|||||||||||| ||| | || ||||| |||||||||||||| || ||||| || |||||
Sbjct 696 CGCGGGTGGCTTTTACCCTAGTAGTGGTTACGAAGATGAGTTATTGTGGGCCGCTGCTTG 755
Query 803 GCTCCACCGTGCCACCA-ACGACCAGATTTATCTTGATTATCTAACACAAGCATCTGGTA 861
||| ||||||||||| | ||||||| |||||||||||||||||| |||| ||| ||
Sbjct 756 GCTTCACCGTGCCACTGGA-GACCAGACATATCTTGATTATCTAACAGAAGCTTCTAATA 814
Query 862 CAGG-AGGTCCGAGGACTGCTTTTTC-C-TGGGATGATAAGTTCGTGGGTGCACAAGTCT 918
||| |||| ||||| | | ||||| | ||||| ||||||||| |||| ||||||||||
Sbjct 815 -AGGGAGGTGCGAGGT-T-CGTTTTCGCGTGGGACGATAAGTTCTTGGGAGCACAAGTCT 871
Query 919 TGGTCGCCAAGCTTGCACTTGAAGGGAAAGTAGA-GAGC-AATGGAAAGATCGC-AGAGT 975
|||| |||||||||| ||||||| ||||| || || | || |||| ||| | ||| |
Sbjct 872 TGGTAGCCAAGCTTGTTTTTGAAGGAAAAGT-GAAGAACGAAGGGAA-GAT-GATAGAAT 928
Query 976 ACAAGAGTATGGCAGAGCAGTTTATCTGCAACTGTGCTCAAAAAGGTTCCAACAACGTTA 1035
||||||||||||||||||| || |||||||||||||||||||| |||| |||||||||||
Sbjct 929 ACAAGAGTATGGCAGAGCAATTCATCTGCAACTGTGCTCAAAAGGGTTTCAACAACGTTA 988
Query 1036 AGAAA-ACCCCTGGCGGTTTGCTCTACTTCTTG-CCGTGGAACAACCTCCAATACACCA- 1092
| ||| || || || |||||||||| || ||| || ||| |||||||||||||||| |
Sbjct 989 A-AAAGACTCCAGGAGGTTTGCTCTGGTTTTTGTCC-TGGGACAACCTCCAATACAC-AG 1045
Query 1093 C-AGCCGCTACTTTCGTCCTCTCAGC-A-T-ATTCTAAATATCTT-ACAGAC-GCA-AAA 1145
| | ||||| |||||| ||| | ||| | | || ||||||| || | || | ||| |||
Sbjct 1046 CCA-CCGCTTCTTTCG-CCT-T-AGCCACTTATGCTAAATACCTCGA-AG-CTGCACAAA 1099
Query 1146 GCCTCCATCCAATGTCCCAATGGTGCT--C-TTCAAGCTTCTGATCTTCTCGACCTCGCT 1202
| || || ||||| |||||||||| | | ||||||||| ||||||||| | || |||
Sbjct 1100 -CATCGATTCAATGCCCCAATGGTGGTGTCCTTCAAGCTTATGATCTTCTTAAACTAGCT 1158
Query 1203 CGTTCCCAGGTAGACTATATACTTGGGTCGAACCCCCAGAACATGAGCTACATGGTTGGA 1262
|| ||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||
Sbjct 1159 CGGGCCCAGGTAGACTACATACTTGGGTCAAACCCCAAGAACATGAGCTACATGGTTGGA 1218
Query 1263 GTT-GGGACCAATTATCCCAAAAAACCACACCATAGAGCAGCCTCTATTGTATCGATCAC 1321
| |||||||||||||| |||| |||||||||||||| ||||||||| || || ||||
Sbjct 1219 -TACGGGACCAATTATCCTAAAAGACCACACCATAGAGGAGCCTCTATAGTGTCAATCAA 1277
Query 1322 CAAGGA-CAAAACACCAGTGACGTGTAGTGAAGGATTCGATGCATGGTTTAACAATCCTG 1380
|| || | || ||| ||||| || | || ||| || || || |||| ||||| |||
Sbjct 1278 GAATGATCCTAA-ACCGGTGACATGCAATGGAGGGTTTGAAGCTTGGTACAACAACCCTA 1336
Query 1381 CACCAAATCCTAACGTTTTAATGGGAGCAGTTGTCGGAGGACCCAACGA-TAACGATGTT 1439
||| |||||||| ||||| | |||||| |||| || ||||| |||| || ||||| |
Sbjct 1337 AACCGAATCCTAATGTTTTGGTTGGAGCAATTGTAGGTGGACCGGACGAGTA-CGATGCT 1395
Query 1440 TATGGAGATGAGA-GGACTGATTACCAGCATG-CTGAGCCTGCT-CCGGCCACTGCTGCT 1496
|| |||||||| | || |||||| |||| | | ||||| | | ||| | || | ||||
Sbjct 1396 TACGGAGATGA-ACGGTCTGATTTTGAGCACGAC-GAGCCCGATACCGTC-ACGGTTGCT 1452
Query 1497 CCATTTG-TTGGTGT-CTTGGCGGCCGTTGC 1525
|| |||| ||||||| || ||| ||| ||||
Sbjct 1453 CC-TTTGGTTGGTGTTCT-GGCTGCCATTGC 1481
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62353731065
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5