BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44570.1
Length=1662
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483586 jgi|Araly1|483586|fgenesh2_kg.4__2646__AT2G44570.1 2435 0.0
Ahg935393 jgi|Araly1|935393|scaffold_403381.1 1219 0.0
Ahg346267 jgi|Araly1|346267|fgenesh1_pg.C_scaffold_4002609 1149 0.0
> Ahg483586 jgi|Araly1|483586|fgenesh2_kg.4__2646__AT2G44570.1
Length=1615
Score = 2435 bits (1318), Expect = 0.0
Identities = 1523/1621 (94%), Gaps = 18/1621 (1%)
Strand=Plus/Plus
Query 1 ATGTCTTGTATATCATCACAATGCTTCATCACAATCAAAAGCATTTGCATTGTG------ 54
||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGTCTTGTGTATCATCACAATGCTTAATCACAATCAAAAGCATTTGCATTGTGTTACTA 60
Query 55 TTATTATTATCGATTACTTGTGGAGCAGTTTCTGCAAATTCAAATTATGGAGAAGCTCTT 114
|||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 61 TTATTATTATCGATTACTCGTGGAGCAATTTCTGCAAATTCAAATTATGGAGAAGCTCTC 120
Query 115 ACGAAGAGTCTTTTGTATTTCGAAGCTCAACGCTCCGGAAAATTGCCTTTGGACCAAAGA 174
||||| |||||||||||||| |||||||||||||| ||||||||||| | | ||||||||
Sbjct 121 ACGAAAAGTCTTTTGTATTTTGAAGCTCAACGCTCTGGAAAATTGCCATCGAACCAAAGA 180
Query 175 GTTA-TATGGAGAGGAGATTCTGCACTCAGAGATGGTTCTGATGCTCATGTTGATCTCAC 233
|||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 181 GTTACT-TGGAGAGGAGATTCTGCACTCAGAGATGGTTCTGATGCTCATATTGATCTCAC 239
Query 234 CGGAGGGTATTACGATGCTGGAGATAATATGAAGTTCGGATTTCCTTTAGCGTTCACAAC 293
||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 240 TGGAGGGTATTACGATGCCGGAGATAATATGAAGTTTGGATTTCCTTTGGCGTTCACGAC 299
Query 294 AACAATGCTAGCTTGGAGTAGTGTAGAGATGGAATCACAGCTTAAGGCCCATCAGGAGCA 353
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 300 AACAATGCTAGCTTGGAGTAGTGTAGAGATGGAATCACAGCTTAAGGCCCACCATGAGCA 359
Query 354 CGGAAACACCCTCGCGGCTCTCAGGTGGGCCACCGATTATCTCATTAAAGCCCATCCTGA 413
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 360 CGAAAACACCCTCGCGGCTCTCAGGTGGGCCACTGATTATCTCATTAAAGCCCATCCTGA 419
Query 414 GCCCAATGTCTTGTACGGACAGGTGGGTGATGCCAACTTGGACCATGCCTGCTGGATGAG 473
|||||||||| |||||||||| |||||||||| ||||||||| |||||||||||||||||
Sbjct 420 GCCCAATGTCCTGTACGGACAAGTGGGTGATGGCAACTTGGATCATGCCTGCTGGATGAG 479
Query 474 ACCCGAGGATATGACCACTCCGCGCCCTTCATACCGCATTGACCCTCAGCATCCTGGTGC 533
||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 480 ACCCGAGGATATGACTACTCCGCGCCCTTCATACCGCATTGATGCTCAGCATCCTGGTGC 539
Query 534 GGATCTCGCGGGTGAGACAGCAGCAGCGATGGCTGCGGCTTCTTTGGCATTTGCGCCATC 593
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 540 TGATCTCGCGGGTGAGACAGCAGCAGCGATGGCTGCAGCTTCTTTGGCCTTTGCGCCATC 599
Query 594 TGATTCAGCCTACGCCAAAACACTTATTAGTCACGCAAAAGAACTATTTGAATTCGCTAA 653
|||| ||||||||||||||||||||||| |||| |||||||| |||||||||||||||||
Sbjct 600 TGATGCAGCCTACGCCAAAACACTTATTGGTCATGCAAAAGATCTATTTGAATTCGCTAA 659
Query 654 GGATTACCCTGGAGTCTATCATAACTCCATTCCTAACGCGGGTGGCTTTTACCCTAGCAG 713
||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 660 GGAATACCCTGGGGTCTATCATTACTCCATTCCTAACGCGGGTGGCTTTTACCCTAGTAG 719
Query 714 CGGTTACGAAGATGAGTTACTT-TGGGCCGCGGCTTGGCTTCACCGTGCCACTGGAGACC 772
|||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct 720 TGGTTACGAAGATGAGTTA-TTGTGGGCCGCTGCTTGGCTTCACCGTGCCACTGGAGACC 778
Query 773 AGACTTATCTCGATCATCTAACACAAGCTTCTAAT-AGTGGAGGTGCAAGGTCCGTTTTT 831
|||| ||||| ||| |||||||| ||||||||||| || |||||||| |||| ||||||
Sbjct 779 AGACATATCTTGATTATCTAACAGAAGCTTCTAATAAG-GGAGGTGCGAGGTTCGTTTTC 837
Query 832 GCGTGGGACGATAAGTTCTTGGGAGCGCAAGTCTTGGTAGCCAAGCTTGTGTTTGAAGGG 891
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 838 GCGTGGGACGATAAGTTCTTGGGAGCACAAGTCTTGGTAGCCAAGCTTGTTTTTGAAGGA 897
Query 892 AAAGTGAAGAACGAAGGGAAGATGATTGAGTACAAGAGTATGGCAGAGCAATTCATCTGC 951
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 898 AAAGTGAAGAACGAAGGGAAGATGATAGAATACAAGAGTATGGCAGAGCAATTCATCTGC 957
Query 952 AACTGTGCTCAAAAGGGTTTCAACAATGTTAAAAAGACCCCAGGAGGTTTGCTCTGGTTC 1011
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 958 AACTGTGCTCAAAAGGGTTTCAACAACGTTAAAAAGACTCCAGGAGGTTTGCTCTGGTTT 1017
Query 1012 TTG-CCGTGGGACAACCTCCAGTACACTGCCACCGCTTCTTTCGCATTAGCCACTTATGC 1070
||| || |||||||||||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct 1018 TTGTCC-TGGGACAACCTCCAATACACAGCCACCGCTTCTTTCGCCTTAGCCACTTATGC 1076
Query 1071 AAAATACCTCGAAGCTGCACAAACATCGATTCAATGCCCCAATGGTGATGTCCTTCAAGC 1130
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1077 TAAATACCTCGAAGCTGCACAAACATCGATTCAATGCCCCAATGGTGGTGTCCTTCAAGC 1136
Query 1131 TTCTGATCTTCTTAACCTTGCTCGTGCCCAGGTAGACTACATACTTGGGTCAAACCCCAA 1190
|| |||||||||||| || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1137 TTATGATCTTCTTAAACTAGCTCGGGCCCAGGTAGACTACATACTTGGGTCAAACCCCAA 1196
Query 1191 GAAAATGAGCTACATGGTTGGATACGGGACCAATTATCCTAAAAGACCACACCATAGAGG 1250
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 GAACATGAGCTACATGGTTGGATACGGGACCAATTATCCTAAAAGACCACACCATAGAGG 1256
Query 1251 AGCCTCTATAGTGTCAATCAAAAATGATCCTAAACCGGTGACATGTAATGGAGGGTTTGA 1310
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1257 AGCCTCTATAGTGTCAATCAAGAATGATCCTAAACCGGTGACATGCAATGGAGGGTTTGA 1316
Query 1311 AGCTTGGTACAACAATCCAAAACCGAATCCTAATCTTTTGGTTGGAGCAATTGTAGGTGG 1370
||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||
Sbjct 1317 AGCTTGGTACAACAACCCTAAACCGAATCCTAATGTTTTGGTTGGAGCAATTGTAGGTGG 1376
Query 1371 ACCGGACGAGTACGATGCATACGGAGATGAACGATCTGATTTTCAGCACGGCGAGCCTGA 1430
|||||||||||||||||| |||||||||||||| ||||||||| |||||| |||||| ||
Sbjct 1377 ACCGGACGAGTACGATGCTTACGGAGATGAACGGTCTGATTTTGAGCACGACGAGCCCGA 1436
Query 1431 TACCGTCACGGTTGCTCCTTTGCTTGGTGTTCTGGCTGCCATTGCATGACCTTAAGTATT 1490
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1437 TACCGTCACGGTTGCTCCTTTGGTTGGTGTTCTGGCTGCCATTGCATGACCTTAATTATT 1496
Query 1491 ATTTTCTTTGGACTACATTTCCC-AAGGACGCTCTAGCAACTAACGTTTTAGGTCTAAGG 1549
||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||
Sbjct 1497 ATTTTCTTTGGACTACATTTCCCTAAG-ACGCTCTAGCGACTAACGTTTTAGGTCTAAGG 1555
Query 1550 GTAGAGAAACAAAA-TTTGATTTGTTAAAATATCTTGATTTAGTGAGACATTTTGAAGAC 1608
|||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 1556 GTAGAGAAACAAAAATTTGATT-GTTAAAATAACTTGATTTAGTGAGACATTTTGAAGAC 1614
Query 1609 T 1609
|
Sbjct 1615 T 1615
> Ahg935393 jgi|Araly1|935393|scaffold_403381.1
Length=1516
Score = 1219 bits (660), Expect = 0.0
Identities = 1209/1467 (82%), Gaps = 66/1467 (4%)
Strand=Plus/Plus
Query 39 AAGCATTTGCATTGTGTT-AT--TATTATCGATTACTTGTGGAGCAGTTTCTGCAAATTC 95
||| |||||||||||||| || || | |||| || ||||||| | ||| | | |
Sbjct 62 AAGTATTTGCATTGTGTTAATAGTAATGTCGACGGCTCGTGGAGC--TGTCT-C---TAC 115
Query 96 AAATTATGGAGAAGCTCTTACGAAGAGTCTTTTGTATTTCGAAGCTCAACGCTCCGGAAA 155
|||||||||||||||||| || ||||||||||||||||||||||||||||| || |||||
Sbjct 116 AAATTATGGAGAAGCTCTCACAAAGAGTCTTTTGTATTTCGAAGCTCAACGTTCTGGAAA 175
Query 156 ATTGCCTTTGGACCAAAGAGTTA-TATGGAGAGGAGATTCTGCACTCAGAGATGGTTCTG 214
|||||||| | |||||||||||| | ||||||||||||||||| || |||||||||||||
Sbjct 176 ATTGCCTTCGAACCAAAGAGTTACT-TGGAGAGGAGATTCTGCTCTTAGAGATGGTTCTG 234
Query 215 ATGCTCATGTTGATCTCACCGGAGGGTATTACGATGCTGGAGATAATATGAAGTTCGGAT 274
|||||||||||||||||||||||||||| || ||||||||||| || |||||||| ||||
Sbjct 235 ATGCTCATGTTGATCTCACCGGAGGGTACTATGATGCTGGAGACAACATGAAGTTTGGAT 294
Query 275 TTCCTTTAGCGTTCACAACAACAATGCTAGCTTGGAGTAGTGTAGAGATGGAATCACAGC 334
|||| || ||||||| |||||||||||||||||||| | | ||||||||| ||||||||
Sbjct 295 TTCCGTTGGCGTTCATGACAACAATGCTAGCTTGGAGCAATATAGAGATGGCATCACAGC 354
Query 335 TTAAGGCCCATCAGGAGCACGG-AAACACCCTCGCGGCTCTCAGGTGGGCCACCGATTAT 393
||||||||||||||||||| || |||| |||| |||||||||| |||||||||||||| |
Sbjct 355 TTAAGGCCCATCAGGAGCA-GGAAAACGCCCTTGCGGCTCTCAAGTGGGCCACCGATTTT 413
Query 394 CTCATTAAAGCCCATCCTGAGCCCAATGTCTTGTACGGACAGGTGGGTGATGCCAACTTG 453
||||||||||||||||||||||||||||||||||||||||| |||||||| | |||| |
Sbjct 414 CTCATTAAAGCCCATCCTGAGCCCAATGTCTTGTACGGACAAGTGGGTGACGGAAACTCG 473
Query 454 GACCATGCCTGCTGGATGAGACCCGAGGATATGACCACTCCGCGCCCTTCATACCGCATT 513
||||| | |||||||||||||| ||||||||||||||||| || ||||||| ||||||
Sbjct 474 GACCACGGATGCTGGATGAGACCTGAGGATATGACCACTCCACGTCCTTCATTTCGCATT 533
Query 514 GACCCTCAGCATCCTGGTGCGGATCTCGCGGGTGAGACAGCAGCAGCGATGGCTGCGGCT 573
|| |||| ||||| ||| | || || || ||||||||||| ||||| |||||||| ||
Sbjct 534 GATGCTCAACATCCAGGTTCAGACCTAGCAGGTGAGACAGCTGCAGCAATGGCTGCAGCG 593
Query 574 TCT-TTGGCATTTGCGCCATCTGATTCAGCCTACGCCAAAACACTTATTAGTCACGCAAA 632
||| ||| | ||||| ||||||||| |||||| ||||||| ||||||| |||| || ||
Sbjct 594 TCTATTGCC-TTTGCACCATCTGATGAAGCCTATGCCAAAATACTTATTGGTCATGCGAA 652
Query 633 AGAACTATTTGAATTCGCTAAGGATTACCCTGG-AGTCTATCATAACTCCATTCCTAACG 691
||| |||||||||||||||||| |||||||| | | || || ||||||||| ||||||
Sbjct 653 AGATTTATTTGAATTCGCTAAGGCGTACCCTGGCATT-TACCAAAACTCCATTACTAACG 711
Query 692 CGGGTGGCTTTTACCCTAGCAGCGGTTACGAAGATGAGTTACTT-TGGGCCGCGGCTTGG 750
| |||||||| ||| | ||||| || |||||||||||||| || ||||| || ||||||
Sbjct 712 CCGGTGGCTTCTACGCGAGCAGTGGATACGAAGATGAGTTG-TTGTGGGCTGCAGCTTGG 770
Query 751 CTTCACCGTGCCACTGGA-GACCAGACTTATCTCGATCATCTAACACAAGCTTCTAATAG 809
|| ||||||||||| | ||||||| |||||| ||| |||||||||| || ||| ||
Sbjct 771 CTCCACCGTGCCACCA-ACGACCAGATTTATCTTGATTATCTAACACAGGCATCTGGTAC 829
Query 810 TGGAGGTGCAAGGTCCGTTTTTGCGTGGGACGATAAGTTCT-TGGGAGCGCAAGTCTTGG 868
|||||| ||||| | |||||||| ||||| |||||||| | |||| || ||||| ||||
Sbjct 830 AGGAGGTCCAAGGACTGTTTTTGCCTGGGATGATAAGTT-TGTGGGTGCACAAGTATTGG 888
Query 869 TAGCCAAGCTTGTGTTTGAAGGGAAAGT-GAAGAACGAAGGGAA-GAT-G-ATTGAGTAC 924
| |||||||||| ||||||||||||| || |||| || |||| ||| | | ||||||
Sbjct 889 TCGCCAAGCTTGCACTTGAAGGGAAAGTAGA-GAAC-AATGGAAAGATCGCA--GAGTAC 944
Query 925 AAGAGTATGGCAGAGCAATTCATCTGCAACTGTGCTCAAAAGGGTTTCAACAATGTTAA- 983
||||||||||| ||||| || |||||||||||||||||||| |||| |||||| |||||
Sbjct 945 AAGAGTATGGCGGAGCAGTTTATCTGCAACTGTGCTCAAAAAGGTTCCAACAACGTTAAG 1004
Query 984 AAAGACCCCAGGAGGTTTGCTCTGGTTCTTGCCGTGGGACAACCTCCAGTACACTGCCA- 1042
||| ||||| || |||||||||| |||||||||||| |||||||||| ||||| || |
Sbjct 1005 AAA-ACCCCTGGCGGTTTGCTCTACTTCTTGCCGTGGAACAACCTCCAATACACCGC-AG 1062
Query 1043 CCGCTTCTTTCG-CAT-TA-GCCACTTATGCAAAATACCTCGAAG-CTGCACAAA-CATC 1097
|||||||||||| | | | || | | || | ||||| || |||| | ||| ||| | ||
Sbjct 1063 CCGCTTCTTTCGTCCTCTCTGC-A-T-ATTCTAAATATCTTGAAGAC-GCA-AAAGCCTC 1117
Query 1098 GATTCAATGCCCCAATGGTGATGTCCTTCAAGCTTCTGATCTTCTTAACCTTGCTCGTGC 1157
|| ||||| |||||||||| | | ||||||||||||||||||| |||| ||||| |
Sbjct 1118 CATCCAATGTCCCAATGGTGCT--C-TTCAAGCTTCTGATCTTCTCGACCTCACTCGTTC 1174
Query 1158 CCAGGTAGACTACATACTTGGGTCAAACCCCAAGAAAATGAGCTACATGGTTGGA-TACG 1216
|||||||||||| ||||||||||| |||||| |||| |||||||||||||||||| | |
Sbjct 1175 CCAGGTAGACTATATACTTGGGTCGAACCCCCAGAACATGAGCTACATGGTTGGAGTT-G 1233
Query 1217 GGACCAATTATCCTAAAAGACCACACCATAGAGGAGCCTCTATAGTGTCAATCAAAAATG 1276
||||||||||||| |||| |||||||||||||| |||||||||||| || |||| || |
Sbjct 1234 GGACCAATTATCCCAAAAAACCACACCATAGAGCAGCCTCTATAGTATCGATCACCAAGG 1293
Query 1277 ATCCTAA-ACCGGTGACATGTAATGGAGGGTTTGAAGCTTGGTACAACAATCCAAAACCG 1335
| | || ||| ||||| |||| || ||| || || || |||| |||||||| |||
Sbjct 1294 A-CAAAACACCAGTGACGTGTAGTGAAGGATTCGATGCATGGTTTAACAATCCTGCACCA 1352
Query 1336 AATCCTAATC-TTTTGGTTGGAGCAATTGTAGGTGGACCGGACGAGTA-CGATGCATACG 1393
|| ||||| | |||| | |||||| |||| || ||||| |||| || ||||| || |
Sbjct 1353 AACCCTAA-CGTTTTAATGGGAGCAGTTGTCGGAGGACCCAACGA-TAACGATGTTTATG 1410
Query 1394 GAGATGA-ACGATCTGATTTTCAGCACGGC-GAGCCTGATACCGTC-ACGGTTGCTCC-T 1449
||||||| | || |||||| ||||| | | ||||||| ||| | || | |||||| |
Sbjct 1411 GAGATGAGAGGA-CTGATTACCAGCATG-CTGAGCCTGCG-CCGGCCACTGCTGCTCCAT 1467
Query 1450 TTGCTTGGTGTTCT-GGCTGCCATTGC 1475
||| ||||||| || ||| ||| ||||
Sbjct 1468 TTG-TTGGTGT-CTTGGCGGCCGTTGC 1492
> Ahg346267 jgi|Araly1|346267|fgenesh1_pg.C_scaffold_4002609
Length=1473
Score = 1149 bits (622), Expect = 0.0
Identities = 1144/1391 (82%), Gaps = 56/1391 (4%)
Strand=Plus/Plus
Query 95 CAAATTATGGAGAAGCTCTTACG-AAGAGTCTTTTGTATTTCGAAGCTCAACGCTCCGGA 153
||||||||||||||||||| | | || |||||||||||||||||||||||||| || |||
Sbjct 95 CAAATTATGGAGAAGCTCTCA-GAAACAGTCTTTTGTATTTCGAAGCTCAACGTTCTGGA 153
Query 154 AAATTGCCTTTGGACCAAAGAGTTA-TATGGAGAGGAGATTCTGCACTCAGAGATGGTTC 212
|||||||||| | |||||||||||| | ||||||||||||||||| || ||||| |||||
Sbjct 154 AAATTGCCTTCGAACCAAAGAGTTACT-TGGAGAGGAGATTCTGCTCTTAGAGACGGTTC 212
Query 213 TGATGCTCATGTTGATCTCACCGGAGGGTATTACGATGCTGGAGATAATATGAAGTTCGG 272
|||||||||| | ||||||||||| ||||| || ||||| ||||| || |||||||| ||
Sbjct 213 TGATGCTCATATCGATCTCACCGGTGGGTACTATGATGCCGGAGACAACATGAAGTTTGG 272
Query 273 ATTTCCTTTAGCGTTCACAACAACAATGCTAGCTTGGAGTAGTGTAGAGATGGAATCACA 332
|||||| || |||||||| |||||||||||||||||||| | | ||||||||| ||||||
Sbjct 273 ATTTCCGTTGGCGTTCACGACAACAATGCTAGCTTGGAGCAATATAGAGATGGCATCACA 332
Query 333 GCTTAAGGCCCATCAGGAGCACGGAAACACCCTC-GCGGCTCTCAGGTGGGCCACCGATT 391
||||| |||||| || ||| | |||||| | ||| | |||||||| ||||||||||||||
Sbjct 333 GCTTAGGGCCCACCACGAGAAGGGAAACTCTCTCAG-GGCTCTCAAGTGGGCCACCGATT 391
Query 392 ATCTCATTAAAGCCCATCCTGAGCCCAATGT-CTTGTACGGACAGGTGGGTGATGCCAAC 450
|||||||||||||||||||||||||||||| || ||||||||| |||||||| | |||
Sbjct 392 TTCTCATTAAAGCCCATCCTGAGCCCAATGTTCT-GTACGGACAAGTGGGTGAGGGAAAC 450
Query 451 TTGGACCATGCCTGCTGGATGAGACCCGAGGATATGACCACTCCGCGCCCTTCATACCGC 510
| |||||| |||||||||||||| |||||||||||||||||||| |||||| |||
Sbjct 451 TCGGACCACAAATGCTGGATGAGACCTGAGGATATGACCACTCCGCGTACTTCATTTCGC 510
Query 511 ATTGACCCTCAGCATCCTGGTGCGGATCTCGCGGGTGAGACAGCAGCAGCGATGGCTGCG 570
|| || |||| ||||| ||| | || || || ||||||||||| ||||| ||||||||
Sbjct 511 ATCGATGCTCAACATCCAGGTTCTGACCTAGCAGGTGAGACAGCTGCAGCAATGGCTGCA 570
Query 571 GCTTCTTTGGCATTTGCGCCATCTGATTCAGCCTACGCCAAAACACTTATTAGTCACGCA 630
|| ||| | || ||||| ||||||||| |||||| ||| ||| ||| ||| |||| |||
Sbjct 571 GCGTCTATCGCCTTTGCACCATCTGATAAAGCCTATGCCCAAATACTCATTGGTCATGCA 630
Query 631 AAAGAACTATTTGAATTCGCTAAGGATTACCCTGGAGTCTATCATAACTCCATTCCTAAC 690
||||| |||||| ||||||||||| | ||| ||| || || || |||||||||||||||
Sbjct 631 AAAGATTTATTTGCATTCGCTAAGGCTCACCGTGGCGTTTACCAAAACTCCATTCCTAAC 690
Query 691 GCGGGTGGCTTTTACCCTAGCAGCGGTTACGAAGATGAGTTACTTTGGGCCGCGGCTTGG 750
||||||||||| ||| | ||||| || |||||||||||||| || ||||| || ||||||
Sbjct 691 GCGGGTGGCTTCTACGCGAGCAGTGGATACGAAGATGAGTTGCTGTGGGCTGCAGCTTGG 750
Query 751 CTTCACCGTGCCACTGGA-GACCAGACTTATCTCGATCATCTAACACAAGCTTCTAATAG 809
|| ||||||||||| | ||||||| |||||| ||| | ||||||||||| || ||
Sbjct 751 CTCCACCGTGCCACCA-ACGACCAGATTTATCTTGATTACCTAACACAAGCAGA-AACAG 808
Query 810 TGGAGGTGCAAGGTCCGTTTTTGCGTGGGACGATAAGTTCTTGGGAGCGCAAGTCTTGGT 869
| |||| ||||| | |||||||| ||||| ||||||||| |||| || |||||||||||
Sbjct 809 -G-AGGTCCAAGGACTGTTTTTGCCTGGGATGATAAGTTCGTGGGTGCACAAGTCTTGGT 866
Query 870 AGCCAAGCTTGTGTTTGAAGGGAAAGT-GAAGAACGAAGGGAAGATGAT--T-GAGTACA 925
|||||||||| ||||||||||||| || || | | | ||||| ||| | |||||||
Sbjct 867 CGCCAAGCTTGCACTTGAAGGGAAAGTAGA-GAGC-A-GTGAAGA-GATCGTAGAGTACA 922
Query 926 AGAGTATGGCAGAGCAATTCATCTGCAACTGTGCTCAAAAGGGTTTCAACAATGTTAA-A 984
|||||||||| ||||| || |||||||||||||||||||| ||| |||||| ||||| |
Sbjct 923 AGAGTATGGCGGAGCAGTTTATCTGCAACTGTGCTCAAAAAGGTGACAACAACGTTAAGA 982
Query 985 AAGACCCCAGGAGGTTTGCTCTGGTTCTTGCCGTGGGACAACCTCCAGTACACTGCCA-C 1043
|| ||||| || |||||||||| |||||||||||| |||||||||| ||||| | | |
Sbjct 983 AA-ACCCCTGGCGGTTTGCTCTACTTCTTGCCGTGGAACAACCTCCAATACACCAC-AGC 1040
Query 1044 CGCTTCTTTCG-CAT-T-AGCCACTTATGCAAAATACCTCGAAGCTGCACAAA-CATCGA 1099
|||| |||||| | | | ||| | | || | ||||| || ||||| ||| ||| | || |
Sbjct 1041 CGCTACTTTCGTCCTCTCAGC-A-T-ATTCTAAATATCTTGAAGCCGCA-AAAGCCTCCA 1096
Query 1100 TTCAA-TGCCCCAATGGTGATGTCCTTCAAGCTTCTGATCTTCTTAACCTTGCTCGTGCC 1158
| ||| ||||||||||||| | | ||||||||||||||||||| |||| |||||| ||
Sbjct 1097 T-CAACTGCCCCAATGGTGCT--C-TTCAAGCTTCTGATCTTCTCCACCTCGCTCGTTCC 1152
Query 1159 CAGGTAGACTACATACTTGGGTCAAACCCCAAGAAAATGAGCTACATGGTTGGA-TACGG 1217
||||||||||| ||||||||||| ||||||||||| |||||||||||||||||| | ||
Sbjct 1153 CAGGTAGACTATATACTTGGGTCGAACCCCAAGAACATGAGCTACATGGTTGGAGTT-GG 1211
Query 1218 GACCAATTATCCTAAAAGACCACACCATAGAGGAGCCTCTATAGTGTCAAT-CAAAAATG 1276
|||||||||||| |||| |||||||||||||| |||||| ||||| ||||| || || |
Sbjct 1212 GACCAATTATCCCAAAAAACCACACCATAGAGCAGCCTCCATAGTATCAATACACAAG-G 1270
Query 1277 ATCCTAA-ACCGGTGACATGTAATGGAGGGTTTGAA-GCTTGGTACAACAATCCAAAACC 1334
| | || ||| ||||| |||| ||||||||| || || ||||| |||||||| |||
Sbjct 1271 A-CAAAACACCAGTGACTTGTAGTGGAGGGTTC-AATGCATGGTATAACAATCCTGCACC 1328
Query 1335 GAATCCTAATC-TTTTGGTTGGAGCAATTGTAGGTGGACCGGACGAGTA-CGATGCATAC 1392
|| ||||| | |||| | |||||| |||| || ||||| ||||| || ||||| ||
Sbjct 1329 AAACCCTAA-CGTTTTAGCGGGAGCAGTTGTCGGAGGACCCGACGA-TAACGATGTTTAT 1386
Query 1393 GGAGATGA-ACGATCTGATTTTCAGCACGGC-GAGCCTGATACCGTCACGGTTGCTCCT- 1449
|||||||| | || || |||| ||||| | | ||||||| || ||||| | ||||||
Sbjct 1387 GGAGATGAGAGGA-CTAATTTCCAGCAAG-CTGAGCCTGCGACGGTCACTGCTGCTCCGC 1444
Query 1450 TTGCTTGGTGT 1460
||| |||||||
Sbjct 1445 TTG-TTGGTGT 1454
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62315640820
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5