BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44578.1
Length=681
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935395 jgi|Araly1|935395|scaffold_403383.1 667 0.0
Ahg935396 jgi|Araly1|935396|scaffold_403384.1 625 1e-178
> Ahg935395 jgi|Araly1|935395|scaffold_403383.1
Length=479
Score = 667 bits (361), Expect = 0.0
Identities = 422/452 (93%), Gaps = 2/452 (0%)
Strand=Plus/Plus
Query 14 ATTTTCTCGAGAATGTTTATTGAAACTGTGATTAGATTCTCTCAGATCATCGCCGAATCC 73
||| |||||||||||||| ||||| | ||||||||||||||||| |||||| |||||
Sbjct 10 ATTGTCTCGAGAATGTTTGTTGAATCAGTGATTAGATTCTCTCATTTCATCGTCGAATTT 69
Query 74 GTCATCATCGCCTCCGTCGTCGTCTTGACTCTCCGTCTCTTCTTCAGATTCGCTTGTTTC 133
||||| ||||||||| |||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 70 GTCATTATCGCCTCCATCGTCGTCTTCACTCTCCGTCTCTTCTTTAGATTCGCTTGTTTC 129
Query 134 CTCGCGAGCCGTTCTTGGCGTCGTTACCGTACATTCACGGTCCAACATCGCCGGAGATGG 193
||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 130 CTCGCCAGCCGTCCTTGGCGTCGTTACCGTACATTCACGGTCCATCATCGCCGGAGATGG 189
Query 194 AGAAAAACCGCGGCGGAGGAAAAACATTCATCACCGTATTGTACGATTTGTCTCGAAGAT 253
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 190 AGAAAAACCACGGCGGAGGAAAAACATTCGTCACCGTATTGTACGATTTGTCTCGAAGAT 249
Query 254 GCGGCGGAGGGAGAGAAGATGAGGCGGATAACGGCGTGCAGTCACTGTTTCCACGTCGAT 313
||||||| ||||||||||||||||||||||||| |||||| |||||||||||||| ||||
Sbjct 250 GCGGCGGCGGGAGAGAAGATGAGGCGGATAACGACGTGCAATCACTGTTTCCACGCCGAT 309
Query 314 TGCATCGATCCGTGG-TTGATGAAGAAGTCCACGTGTCCATTGTGCAGAGCTGAGATACC 372
||||||||||||||| | || |||||||||||||||||| ||||| ||||||||||||||
Sbjct 310 TGCATCGATCCGTGGCTAGA-GAAGAAGTCCACGTGTCCTTTGTGTAGAGCTGAGATACC 368
Query 373 GCCGGTGCCGCCGGGAAATCCTCTGGTGGCGCTTTTTGTTCCTCCCGGCGTGATTGAGAT 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 GCCGGTGCCGCCGGGAAATCCTCTGGTGGCGCTTTTTGTTCCTCCCGGCGTGATTGAGAT 428
Query 433 GTTCACCAAAGGAATCATCCCCGACGCGTAGG 464
|||||| |||||||| ||| ||||||||||||
Sbjct 429 GTTCACTAAAGGAATTATCTCCGACGCGTAGG 460
> Ahg935396 jgi|Araly1|935396|scaffold_403384.1
Length=522
Score = 625 bits (338), Expect = 1e-178
Identities = 413/449 (92%), Gaps = 6/449 (1%)
Strand=Plus/Plus
Query 14 ATTTTCTCGAGAATGTTTATTGAAACTGTGATTAGATTCTCTCAGA-TCATCGCCGAATC 72
|||||||||||||||||||||||| | ||||||||||||||| | | |||| ||||||||
Sbjct 9 ATTTTCTCGAGAATGTTTATTGAATCAGTGATTAGATTCTCTGA-ATTCATTGCCGAATC 67
Query 73 CGTCATCATCGCCTCCGTCGTCGTCTTGACTCTCCGTCTCTTCTTCAGATTCGCTTGTTT 132
||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 68 CGTCATCATCGTCTCCGTCGTCGTCTTCTCTCTCCGTCTCTTCTTTAGATTCGCTTGTTT 127
Query 133 CCTCGCGAGCCGTTCTTGGCGTCGTTACCGTACATTCACGGTCCAACATCGCCGGAGATG 192
|||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 128 CCTCGCCAGCCGACCTTGGCGTCGTTACCGTACATTCACGGTCCATCATCGCCGGAGATG 187
Query 193 GAGAAAAACCGCGGCGGAGGAAAAACATTCATCACCGTATTGTACGATTTGTCTCGAAGA 252
|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 188 GAGAAAAACCACGGCGGAGGAAAAACATTCATCACCGTACTGTACGATTTGTCTCGAATA 247
Query 253 TGCGGCGGAGGGAGAGAAGATGAGGCGGATAACGGCGTGCAGTCACTGTTTCCACGTC-G 311
||| |||| ||||| ||||||||| ||||| ||||||||| |||||||||||||| | |
Sbjct 248 TGCAACGGAAGGAGAAAAGATGAGGAGGATATCGGCGTGCAATCACTGTTTCCACG-CTG 306
Query 312 ATTGCATCGATCCGTGG-TTGATGAAGAAGTCCACGTGTCCATTGTGCAGAGCTGAGATA 370
|||| |||||||||||| |||| ||||||||| |||||||| ||||| ||||||||||||
Sbjct 307 ATTGTATCGATCCGTGGTTTGA-GAAGAAGTCTACGTGTCCTTTGTGTAGAGCTGAGATA 365
Query 371 CCGCCGGTGCCGCCGGGAAATCCTCTGGTGGCGCTTTTTGTTCCTCCCGGCGTGATTGAG 430
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 366 CCTCCGGTGCCGCCGGGAAATCCTCTGGTGGCGCTTTTTGTGCCTCCCGGCGTGATCGAG 425
Query 431 ATGTTCACCAAAGGAATCATCCCCGACGC 459
||||||||||||||||||||| |||||||
Sbjct 426 ATGTTCACCAAAGGAATCATCTCCGACGC 454
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25008633552
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5