BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44580.1
Length=1368
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483588 jgi|Araly1|483588|fgenesh2_kg.4__2648__AT2G44580.1 2049 0.0
> Ahg483588 jgi|Araly1|483588|fgenesh2_kg.4__2648__AT2G44580.1
Length=1372
Score = 2049 bits (1109), Expect = 0.0
Identities = 1281/1364 (94%), Gaps = 11/1364 (1%)
Strand=Plus/Plus
Query 6 TGGAAGAAATTGGAGGAGCTGAAGCAGTGATAAATCTCAAATCTGGATATTC-GCTACCA 64
||| || ||||| ||||||| ||||||| |||||||||||| |||| | ||| | |||||
Sbjct 16 TGGGAG-AATTGAAGGAGCTAAAGCAGTCATAAATCTCAAACCTGGTTCTTCAG-TACCA 73
Query 65 ATTTCTTATCACCCATGTTTTGGGCCTCACGAGGATCTACTTCTTCTTGAAGCTGATGAC 124
||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 74 ATTTCGTATCACCCATGTTTTGGACCTCATGAGGATCTACTTCTTCTTGAAGCTGATGAC 133
Query 125 AAACTCGTCTCTGATATCTTTCATCAAAGGGTAACATTGAGAGGACTTCCTGATGAAGAT 184
|||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||
Sbjct 134 AAACTCGTCTCTGATATCTTCCATGAAAGGGTGACATTGAGAGGACTTCCTGATGAAGAT 193
Query 185 GCTGTTCTTTGCACCAAGTCTAAGACTTATGCTATCAAATTTGTTGGTAATTCTAATTCC 244
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 194 GCTGTTCTTTGCACCGAGTCTAAGACTTATGCTATCAAATTTGTTGGTAATTCTAATTCC 253
Query 245 ATGTTCCTTATTCCTCCTTCAATTTTTCCTGGAGATGCACAAGTTTCTGATACCAACAAC 304
|||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||
Sbjct 254 ATGTTCCTTATTCCTCCTTCCATTTGTCCTGGAGATGCGCAAGTTTCTGATACCAACAAC 313
Query 305 AATGTATCGGTTCTCAAAATCGCTCCTGGTAATATGGAACTTGTTGAGGCTTCTCCTAGG 364
|| ||||||||||||||| | ||||||||||||||||||||||| |||| |||||||||
Sbjct 314 AACGTATCGGTTCTCAAACTTGCTCCTGGTAATATGGAACTTGTGGAGGTTTCTCCTAGA 373
Query 365 CTTGATAAACTTAAGCAGATTCTCTTGGCAAATCCTTTTGGTGCTGGTGAAGTTGAAGCT 424
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 374 CTTGACAAACTTAAGGAGATTCTCTTGGCAAATCCTTTTGGTGCTGGTGAAGTTGAAGCT 433
Query 425 ATGATGGATGTTGATAATGATGACTTAGACCATAGTGGGAAGAAAGATCTAGCGTTGTAC 484
|||||||| |||| ||||||| |||||||||| |||||||| ||||| ||||||||
Sbjct 434 ATGATGGA---TGATGATGATGATTTAGACCATAATGGGAAGAGGGATCTTGCGTTGTAT 490
Query 485 ACTTGGAGCGATTTGGTTAACACGGTTCAAGCGAGTGATGAGGAGTTACGCAATGGCTTG 544
|| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 491 ACATGGACCGATTTGGTTAACACGGTACAAGCGAGTGATGAGGAGTTACGCAATGGCTTG 550
Query 545 CAGAGTCTTTCTGCTATTGAGATTGATGGTT-TCTGGAGGGTTATAGATGAGAATTACCT 603
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 551 CAGAGTCTTTCTGCTATTGAGATTGATGGTTAT-TGGAGGGTTATAGATGAGAATTACCT 609
Query 604 AGACGTGATTCTGAGAATGCTTCTTCATAACTGTGTATTGAAAGATTGGTCATTTGATGA 663
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 610 AGACGTGATTCTGAGAATGCTCCTTCATAACTGTGTATTGAAAGATTGGTCGTTTGATGA 669
Query 664 TCTTGATGAAGATGAAGTTGTGAATGCTTTGGTAGCTGATGAGTTTCCTAGTCAACTAGC 723
||| |||||||||||||||||| |||| || |||||||||||||||||||||||||||||
Sbjct 670 TCTCGATGAAGATGAAGTTGTGGATGCGTTAGTAGCTGATGAGTTTCCTAGTCAACTAGC 729
Query 724 GAGTCACTGCTTGCGTGTGTTTGGCTCTAAAGTTAATGAAACTGATAAGTGGAAGTTGGA 783
| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 730 GGGTCACTGCTTGCGCGTGTTTGGCTCTAAAGTTAACGAAACTGATAAGTGGAAGTTGGA 789
Query 784 ACCGAGGCTTGTGTGTTTGCACTTTGCTagacagatactgagagaagaaaagatgagact 843
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 790 ACCGAGGCTTGTATGTTTGCATTTTGCTAGACAGATACTGAGAGAAGAAAAGATGAGACT 849
Query 844 agagagtttcatggaagagtggaagaagaagaTACCAGATGGGATGGAAGAAAGATTCGA 903
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 850 TGAGAGTTTCATGGAAGAGTGGAAGAAGAAGATTCCAGATGGGATGGAAGAAAGATTCGA 909
Query 904 GATGCTTGAAGGAGAGGTTTTAACAGAGAAAATCGGGATCGAGACACGGGTCTATACGTT 963
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 910 GATGCTTGAAGGAGAGGTTTTAACAGAGAAAATCGGGATCGAAACACGGGTTTATACATT 969
Query 964 TAGTGTGCGCTCTCTGCCTTCAACTCCAGAAGAAAGGTTTTCAGTACTCTTTAAACATAG 1023
||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 970 CAGTGTACGCTCTCTGCCTTCAACTCCAGCAGAACGGTTTTCAGTACTCTTTAAACATAG 1029
Query 1024 ATCAAAATGGGAATGGAAAGACTTAGAGCCTTACCTAAGGGATCTTCATGTTCCTAGACT 1083
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1030 ATCAAAATGGGAATGGAAAGACTTAGAGCCATACCTAAGGGATCTTCATGTTCCTAGACT 1089
Query 1084 ATCTATGGAAGGGTTACTTCTGAAATACACACGCAGAGCACAACCTAAAGCTGATGCACC 1143
|| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1090 TTCCATGGAAGGTTTGCTTCTGAAATACACACGCAGAGCACAACCTAAAGCTGATGCACC 1149
Query 1144 ACCTGTCTTTAGTGCAAGATAAGATAGTTTCTCTATTTCTAAAACC-TTCGGTTTCTTTG 1202
||||||||||||||||||||||||||| ||||||||||||||| || || || |||||||
Sbjct 1150 ACCTGTCTTTAGTGCAAGATAAGATAGCTTCTCTATTTCTAAA-CCGTTTGGCTTCTTTG 1208
Query 1203 TTTTGTGTTATTTGAT-ATTTTAGAAGTGAAATTACAGGTCACAGATCATCCAGTTTCTT 1261
|||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1209 TTTTGTGTTATTTGTTGATGTTAGAAGTGAAATTACAGGTCACAGATCATCCAGTTTCTT 1268
Query 1262 AACTAATTGGTTAAAACTATATTTATTGGCTGGGCCCAAAATTGAAGAGAATAGGCCCTG 1321
| ||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1269 ACCTAATTGTTTAAAGCTATATTTATTGGCTGGGCCCAAAATTGAAGAGATTAGGCCCTG 1328
Query 1322 GATCTGGTTGTCTTGTTAGGCCTAGTCTTTGTCATGTCTAGTAA 1365
|||||||||||||| |||||||| ||||||||||||||| ||||
Sbjct 1329 GATCTGGTTGTCTTTTTAGGCCTTGTCTTTGTCATGTCTCGTAA 1372
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51199077531
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5