BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44600.1
Length=1359
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483592 jgi|Araly1|483592|fgenesh2_kg.4__2652__AT2G44600.1 983 0.0
Ahg486489 jgi|Araly1|486489|fgenesh2_kg.5__2481__AT3G60200.1 172 5e-42
> Ahg483592 jgi|Araly1|483592|fgenesh2_kg.4__2652__AT2G44600.1
Length=1265
Score = 983 bits (532), Expect = 0.0
Identities = 614/652 (94%), Gaps = 12/652 (2%)
Strand=Plus/Plus
Query 441 ATCATCGTCATCGGAAAAAGTCTTCGAATCAGACAGATCGTTTAAGAAGaaaaaaaGCGG 500
||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 457 ATCATCGTCGTCGGAAAAAGTCTTCGAATCAGACAGATCGTTCAAGAAGAAGAAAAGCGG 516
Query 501 TTTATCTAGATTCTCTAGCTTCTTCAGAACGAGATCTGACGATTACGATTCGCGTCGCGA 560
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 517 TTTATCTAGATTCTCAAGCTTCTTCAGAACGAGATCTGACGATTACGATTCGCGACGCGA 576
Query 561 TTCATGCGACGCCTCCACGGTTTTTTCTCAACCGTCGTCGGCGACGACTTCACGGTCATG 620
||||||||| || ||||| | ||||||||| |||| ||| |||||||||||||||||||
Sbjct 577 TTCATGCGATGCGTCCAC-G--TTTTCTCAATCGTCTTCGTCGACGACTTCACGGTCATG 633
Query 621 GTTTTCGAAGGTTATATCAGTTCGATCGAAGAAACAATCAACCACCAATACTTGCTACAT 680
||||||||| ||| || |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 634 GTTTTCGAAAGTTCTAACAGTTCGATCGAAGAAACAATCAACCACCACTACTTGCTACAT 693
Query 681 CGAAGATTTGATCGCTTCCGAATCCGATCATCATCATCATAATCAAAATCGACCTAGACA 740
||| |||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 694 CGAGGATTTGATCGCTTCCGAATCCG------ATCATC---ATCAAAATCGACCTAGACA 744
Query 741 GAGATATTGTAGAGGAATGTCGCCGGCGGGAGATTCAACGACGAACGATGAATCAGTTGA 800
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 745 GAGATATTGTAGAGGAATGTCGCCGGCGGGAGATTCAGCGGCGAACGATGAATCAGTTGA 804
Query 801 GGAATCTCCAGGGAGATTAAGAAGAACGCCGGTGATGGGAACTCCGGGAAGGAAAAAGAC 860
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 805 GGAATCTCCAGGGAGATTAAGAAGAACCCCGGTGATAGGAACTCCGGGAAGGAAAAAGAC 864
Query 861 GGCGACGATTGGGATTGGTAGAAGTGTATCAGGGATGGCTTTTTGCTTAAGTCCATTAGT 920
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 865 GGCGACGATTGGGATTGGTAGAAGTGTATCAGGGATGGCTTTTTGCTTGAGTCCATTAGT 924
Query 921 GAGAGCTAAACCTAACTGTTCTTCTAACTGGAAAGCGAAATTTCCGCCGGATTTTGGATA 980
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 925 GAGAGCTAAACCTAACTGTTCGTCTAATTGGAAAGCGAAATTTCCGCCGGATTTTGGATA 984
Query 981 TTCCGGTGAATTGAAATCTCCGGCGAAGCCTCACCTATCAACGGCGGCGTCTTTTTGCGG 1040
|||||| |||||||| ||||||||||||||||| || |||||||||||||||||||||||
Sbjct 985 TTCCGGCGAATTGAAGTCTCCGGCGAAGCCTCATCTTTCAACGGCGGCGTCTTTTTGCGG 1044
Query 1041 TAACCGGTCTAAGAAGCTTGTGGATTTAGGTAGAGTTGATCACCGCCGTTGA 1092
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1045 TAACCGGTCTAAGAAGCTTGTGGATTTAGGTAGAGTTGATCACCGCCGTTGA 1096
Score = 656 bits (355), Expect = 0.0
Identities = 418/445 (94%), Gaps = 17/445 (4%)
Strand=Plus/Plus
Query 1 ACTCCGGCGATTCTCTTCTCATTAGATCctctctctctctctctcAAAAAGAGAAAATCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACTCCGGCGATTCTCTTCTCATTAGATCCTCTCTCTCTCTCTCTCAAAAAGAGAAAATCT 60
Query 61 CAGAGCCAGAAGAAGACAAATATATCTTTTCTATTCCTCAGATCTCTGAAATCGAAGTTT 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 61 CAGAGCCAGAAGAAGACAAATATATCTTTTTTATTCCTCAGATCTCTGAAATCGAAGTTT 120
Query 121 CTCGAACTGttttgttttgttttttttCCGATGAGGTGTAAGAGACACACAGTAGATTTC 180
||| || || ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 CTCAAA--GT---GTTTTGTTTTT---CCGATGAGGTGTAAGAGACACACAGTAGATTTC 172
Query 181 AGTAGCAGTATCGGCGTTTGTGCTTCTTGTCTCCGTGAACGACTCTTTACTCTCGCCGTT 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 173 AGTAGCAGTATCGGCGTTTGTGCTTCTTGTCTCCGTGAACGACTCTTTTCTCTCGCCGTT 232
Query 241 TCAACCGCCGCGTCTGAAAACGACGATAACGATCATCGTCATTCTCGTATTTCTCCACCT 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 233 TCAACCGCCGCGTCTGAAAACGACGATAACGATCATCGTCATTCTCGGATTTCTCCACCT 292
Query 301 CCTCTGCTTTTTCCTCGTTCTGTTTCTCCTTACGTTGCTCCTAGAAAATCCGACGCCGGA 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 293 CCTCTGCTTTTTCCTCGTTCTGTTTCTCCTTACGTTGCTCCGAGAAAATCCGACGCCGGA 352
Query 361 ACCGGAACCGGAGCTGGAGGAAGAGACTCCGTAGCTTCTTCTAATAACCGATTCTTCGCA 420
|||||| |||| | |||| || || ||||||||||||||||||||||||||||||
Sbjct 353 ACCGGA---GGAG--G-AGGA-GATTCT--GTAGCTTCTTCTAATAACCGATTCTTCGCA 403
Query 421 ACGCCGCAAGTGGTTGTTCAATCAT 445
||||||||||| |||| ||| ||||
Sbjct 404 ACGCCGCAAGTTGTTGATCATTCAT 428
Score = 243 bits (131), Expect = 4e-63
Identities = 166/180 (92%), Gaps = 13/180 (7%)
Strand=Plus/Plus
Query 1161 ATATGGT-GTGGCTTTACTATACCAACAGATAAAGAGTGAATTTACtt-tttttttGGTT 1218
||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1097 ATATGGTGGTGGCTTTACTATACCAACAGATAAAGAGTGAATTTACTTCTTTTTTTAGTT 1156
Query 1219 ATTCATTACAGTATATTATAATGTTTTGTGATTGTATATTAAAGGAAGAAATATTCGTTT 1278
||| | | ||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1157 ATT--T-A---TAT-T-ATAATGTTTTGTGATTGTATATTAAAGGAAGAAATATTCGTTT 1208
Query 1279 TTATATTTAGGAGATTAGAAGAGAACAATGTCGTGTGTTTTCTTTTTCTTTGGATAGTCT 1338
|||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||
Sbjct 1209 TTATATTTAGGAGATTAGAAGA-A-CAATGTCGTGTGTTT-CTTTTTCTTTGGATAGTCT 1265
> Ahg486489 jgi|Araly1|486489|fgenesh2_kg.5__2481__AT3G60200.1
Length=937
Score = 172 bits (93), Expect = 5e-42
Identities = 291/382 (76%), Gaps = 31/382 (8%)
Strand=Plus/Plus
Query 731 GACCT-AGACAGAGATATTGTAGAGGAATGTCGCCGGCGGGAGATTCAACGACGAACGAT 789
||||| | || || ||| |||||||||||||| || ||| |||| | ||| |||| |
Sbjct 573 GACCTCA-ACGGATATACTGTAGAGGAATGTCACCTGCGAGAGA-T--ACG--GAACCA- 625
Query 790 GAATCAGTTG-AGGAATC--TCCAGGGAGATTAAGAAGAACGCCGGTGATGGGAACTCCG 846
| | | || | |||||| | | ||| ||| |||||||| |||| || | |||||||
Sbjct 626 G-AGCCGTCGTCGGAATCAATTGA-GGA-ATTGAGAAGAACTCCGGCGACGAAAACTCCG 682
Query 847 GGAAGGAAAAAGACGGCGACGATTGGGAT-TGGTAGAAGTGTATCAGGGATGGCTTTTTG 905
||||||| |||| |||| | |||||| || || | | | || ||||||||||||||
Sbjct 683 GGAAGGAGGAAGATTGCGA--A-TGGGATAGGGAAG-ACTATGTCGGGGATGGCTTTTTG 738
Query 906 CTTAAGTCCATTAGTGAGAGCTAAACCTAACTGTTC-TTCT-AACTGGAAAGCGAAATTT 963
||| ||||| || |||||||||| ||||| ||| | || | ||| ||||| || ||||
Sbjct 739 CTTGAGTCCGTTGGTGAGAGCTAGTCCTAATTGTCCGTT-TAAAC-GGAAAATGAGATTT 796
Query 964 CCGCCGGATTTTGGATA-TTCCGGTGAATTGAAATC--T-CCGGCG-AAGCCTCACCTAT 1018
|| |||| ||||| || |||||| || ||| | | |||| | |||||||| |||
Sbjct 797 CCATCGGAATTTGG-TACTTCCGGGGAGGTGACGGCGGTGCCGG-GAAAGCCTCATATAT 854
Query 1019 CAACGGCGGCGTCTTTTTGCGGTAACCGGTCTAAGAAGCTTGTGGATTTAGGTAGAGTTG 1078
|| | |||||||| ||||| | ||| | || ||||||||||||||||||||||||||||
Sbjct 855 CAGCAGCGGCGTCGTTTTGTGCAAACAGATCGAAGAAGCTTGTGGATTTAGGTAGAGTTG 914
Query 1079 ATCACCGCCGTTGA-ttttttt 1099
||| |||||||||| |||||||
Sbjct 915 ATCGCCGCCGTTGAGTTTTTTT 936
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50855971278
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5