BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44610.1
Length=1177
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935400 jgi|Araly1|935400|scaffold_403388.1 1293 0.0
> Ahg935400 jgi|Araly1|935400|scaffold_403388.1
Length=758
Score = 1293 bits (700), Expect = 0.0
Identities = 734/751 (98%), Gaps = 0/751 (0%)
Strand=Plus/Plus
Query 90 CCAGAGCGACGGGATCTCTCTCCGGTAAATATCGGAAACTTTTATTCTCAGCAAAGCGAG 149
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 CCACAGCGACGGGATCTCTCTCCGGTAAATATCGGAAACTTTTTTTCTCAGCAAAGCGAG 60
Query 150 ATCTCGACGTTTCTCAGATCCGTCCGGCGAGTTAGATCCTTGAGAAATCATGGCTCCGGT 209
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 ATCTCGACGTTTCTCAGATCCGTCCGGCGAGTTAGATCTTTGAGAAATCATGGCTCCGGT 120
Query 210 CTCGGCACTCGCTAAGTATAAGCTGGTGTTTCTGGGAGATCAATCCGTCGGCAAAACCAG 269
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTCGGCACTCGCCAAGTATAAGCTGGTGTTTCTGGGAGATCAATCCGTCGGCAAAACCAG 180
Query 270 TATCATTACTCGATTCATGTACGACAAATTCGACAACACTTACCAGGCCACAATTGGTAT 329
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 181 TATCATCACTCGATTCATGTACGACAAATTCGACAATACTTACCAGGCCACAATTGGTAT 240
Query 330 TGATTTTCTATCAAAGACAATGTACCTTGAAGATCGAACGGTCAGACTTCAGTTGTGGGA 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TGATTTTCTATCAAAGACAATGTACCTTGAAGATCGAACGGTCAGACTTCAGTTGTGGGA 300
Query 390 TACAGCTGGGCAAGAGCGATTCAGGAGTCTAATTCCGAGCTATATCAGGGATTCCTCCGT 449
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 301 TACGGCTGGGCAAGAGCGATTCAGGAGTCTAATTCCGAGCTATATCAGGGATTCCTCTGT 360
Query 450 TGCTGTTATTGTGTATGATGTTGCAAGCAGGCAGTCCTTCCTAAACACTACTAAGTGGAT 509
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 361 TGCTGTTATTGTGTATGATGTTGCAAGCAGGCAATCCTTCCTAAACACTACTAAGTGGAT 420
Query 510 CGATGAGGTTAGGACAGAACGTGGTAGTGATGTCATAGTCGTGCTTGTGGGAAACAAAAC 569
|||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||
Sbjct 421 CGATGAGGTTAGGACAGAGCGTGGTAGTGATGTCATAGTTGTGCTTGTGGGTAACAAAAC 480
Query 570 TGATCTAGTGGACAAAAGGCAAGTGTCAATAGAGGAAGCAGAAGCTAAGGCACGCGAACT 629
||| || |||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 481 TGACCTTGTGGACAAAAGGCAAGTGTCAATAGAGGAAGCAGAAGCTAAGGCTCGTGAACT 540
Query 630 TAATGTAATGTTCATCGAAACCAGTGCCAAAGCGGGCTTCAACATTAAGGCGCTCTTCCG 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TAATGTAATGTTCATCGAAACCAGTGCCAAAGCGGGCTTCAACATTAAGGCGCTCTTCCG 600
Query 690 CAAGATAGCAGCAGCTTTGCCGGGAATGGAGACATTGTCTTCAACAAAGCAAGAGGATAT 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CAAGATAGCAGCAGCTTTGCCGGGAATGGAGACATTGTCTTCAACAAAGCAAGAGGATAT 660
Query 750 GGTTGATGTCAATCTCAAGTCTTCCAATGCAAATGCATCTCTCGCTCAGCAGCAATCAGG 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GGTTGATGTCAATCTCAAGTCTTCCAATGCAAATGCATCTCTCGCTCAGCAGCAATCAGG 720
Query 810 AGGATGCTCTTGTTAGATTTGGcaacaacaa 840
||||||||||||||||||||||||||| |||
Sbjct 721 AGGATGCTCTTGTTAGATTTGGCAACAGCAA 751
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43917600384
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5