BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44620.1
Length=676
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483594 jgi|Araly1|483594|fgenesh2_kg.4__2654__AT2G44620.1 881 0.0
> Ahg483594 jgi|Araly1|483594|fgenesh2_kg.4__2654__AT2G44620.1
Length=616
Score = 881 bits (477), Expect = 0.0
Identities = 582/628 (93%), Gaps = 26/628 (4%)
Strand=Plus/Plus
Query 30 ATCAAATCCCTAATTCTCGAGCTCGAAGAAAG-AGACGAAAATGGCACTGAGAAATGCAA 88
||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 1 ATCAAATCCCTAAATCTCGAGCTCGAAG-AAGAAGACGAAAATGGCACTGAGAAATGCAA 59
Query 89 TTCTTCGTCACCTGAGGGTTCCGGTGCAAACCCTAGGATTGAATCAGTCTAAAATTGGGT 148
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
Sbjct 60 TTCTTCGTCACCTGAGGGTTCCGGTGCAAACCCTAGGACTGAATCAGTCTCAAATTGGAT 119
Query 149 TCCTTGGTACGATCCGGTCATTTTCTTCGCACGATGATCATCTTAGCAGAGAAGCTGTCG 208
|||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 120 TCCTTGGTTCGATCCGGTCGTTTTCTTCGCACGATGATCATCTCAGCAGAGAAGCTGTCG 179
Query 209 TCGATAGAGTACTCGATGTTGTCAAGAGCTTCCCCAAAGTCGATCCCTCTAAGGTGACTC 268
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TCGATAGAGTTCTCGATGTTGTCAAGAGCTTCCCCAAAGTCGATCCCTCTAAGGTGACTC 239
Query 269 CTGAGGTTCATTTCCAAAACGATTTGGGATTAGATAGTTTGGACACAGTGGAGATAGTGA 328
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 240 CTGAGGTTCATTTCCAAAACGATCTGGGATTAGATAGTTTGGACACAGTGGAGATAGTGA 299
Query 329 TGGCTATTGAAGAGGAATTCAAGCTGGAAATTCCAGACAAAGAAGCTGACAAGATCGATT 388
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 300 TGGCTATTGAAGAGGAATTCAAGCTGGAAATCCCAGACAAAGAAGCTGACAAGATCGATT 359
Query 389 CTTGCTCTCTCGCCATTGAATACGTTTACAATCATCCAATGTCTAGCTAATCGCTGTGTG 448
||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 360 CTTGCTCTCTCGCAATTGAATACGTTTACAATCATCCAATGTCTAGCTAAAAGCTGTGTG 419
Query 449 CTCTCTCATGGTTTCT----C-----CTTCC---TTTTTCTTGTATGAGGTTCTTCTCTC 496
|||||||||||||||| | ||||| ||||| ||||||||||||||||||||
Sbjct 420 CTCTCTCATGGTTTCTTATTCGGTTTCTTCCCCCTTTTT-TTGTATGAGGTTCTTCTCTC 478
Query 497 TTTGATAATGCCATAATGGGATTTGCaaaaaaaT-CACTTTTATTTGGAGAGCATTGTTA 555
|| ||||||| || ||||||||| |||| ||||| | ||| |||||||||||||
Sbjct 479 TT-GATAATG-------GG-ATTTGCAAATAAATTCACTTCTGTTTTGAGAGCATTGTTA 529
Query 556 TTGACTCTTTTAACGGTTCCAGTTTCTTAAAAAGAAAACCTTTTTGCTTGAATCTTGTGA 615
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 530 TTGACTCTTTTAACGGTTCTAGTTTCTTAAAA-GAAAACCTTTTTGCTTGAATCTTGTGA 588
Query 616 AAGTTGACACTTTTTCTTGAGTTAATAC 643
||||||||||| |||||||| |||||||
Sbjct 589 AAGTTGACACTCTTTCTTGAATTAATAC 616
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24818018967
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5