BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44640.1
Length=1732
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483595 jgi|Araly1|483595|fgenesh2_kg.4__2655__AT2G44640.1 2178 0.0
> Ahg483595 jgi|Araly1|483595|fgenesh2_kg.4__2655__AT2G44640.1
Length=1434
Score = 2178 bits (1179), Expect = 0.0
Identities = 1339/1413 (95%), Gaps = 24/1413 (2%)
Strand=Plus/Plus
Query 22 AAA-GAAGAAGAGGAAGAAGAAAATGGCGAATCTTAACTCAGCTATTGATTCAGTGTTTT 80
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 28 AAAGGAAGAAGAAGAAGAAGAAAATGGCGAATCTTAACTCAGCTATTGATTCAGTGTTTT 87
Query 81 GGGATCAGAACGTTTCTTCACCTCAAACCCTTGAAGGCACTGCTCGCTCTGTTCCCGGTG 140
|||| ||||||||||||||||| |||||||||||||| || |||||||||||||||||||
Sbjct 88 GGGACCAGAACGTTTCTTCACCCCAAACCCTTGAAGGAACGGCTCGCTCTGTTCCCGGTG 147
Query 141 AGCCATTTCCCTTAGACGGAGCACGAGCAAGCCGCTCTCACCGGATTCAACAGCTCTCTC 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 148 AGCCATTTCCCTTAGACGGAGCACGAGCAAGCCGCTCTCACCGGATTCAACAGCTCTCTC 207
Query 201 TGCTTCGCGAAGGCTTTCCTCTTGGAATCATTCCTTCTTTGGCTCCTGCTTCTGACAAGA 260
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 208 TGCTTCGCGAAGGCTTTCCTCTCGGAATCATTCCTTCTTTTGCTCCTGCTTCTGACAAGA 267
Query 261 GACTCGGCTCTTTCTCTCTCAATTCTCTCTTGCTCAGTCCTTCCTCTAACAACTGGTGGT 320
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 268 GACTTGGCTCTTTCTCTCTCAATTCTCTCTTGCTCAGTCCTTCCTCTAACAACTGGTGGC 327
Query 321 TAGGTTTAGTTGGGCAGTTCAAACCAAAGAAGCTCTTTGCTGATATCAAAGCAGATATTA 380
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 328 TAGGATTAGTTGGGCAGTTCAAACCTAAGAAGCTCTTTGCTGATATCAAAGCAGATATTA 387
Query 381 GCAATGCAGAAGAGTGGGAT-TTGCAAGTTGTAAAGGATACAGCAAAACACATTGTTGAC 439
|||||||||||||||||||| || |||||||| ||||||||||| |||||||||||||||
Sbjct 388 GCAATGCAGAAGAGTGGGATCTT-CAAGTTGTTAAGGATACAGCTAAACACATTGTTGAC 446
Query 440 AAATCCCTTTACTCTATTGGTTTATGGACTCAGATTGCGTTGGGTACTTCTTCTTCTCTC 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 447 AAATCCCTTTACTCTATTGGTTTATGGACTCAGATTGCGTTGGGTACTTCTTCTTCTCTC 506
Query 500 TTGCTTAGCACTGAACGTCTTGGAGATAAAAACGGACTCCGAAACAAGTTGATGCTTGTT 559
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 507 TTGCTTAGCACTGAACGCCTTGGAGATAAAAACGGACTCCGAAACAAGTTGATGTTTGTT 566
Query 560 CATCCGCTTGAGAAACATGATCTCACTGTGGAAGCAGCTTGGCCAGATTTGTTTTTGGAC 619
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 567 CATCCGCTTGAGAAACATGATCTCACTGTGGAAGCAGCTTGGCCAGATCTGTTTTTGGAT 626
Query 620 AATAAAGGACGTTTCTGGGATGTTCCTGAATCTTTGAATGTTGATGTCTCATCCCTTGTT 679
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 627 AATAAAGGACGTTTCTGGGATGTTCCTGAATCATTGAATGTTGACGTCTCATCCCTTGTT 686
Query 680 CCAGAGTCAGGGGTTAGATACCGGTTTGGTCTTCATAAAAGCAGGGGTAATCCTCAGCCT 739
||||| |||||| || ||||||||||||| || || ||||||||||||||||||||||||
Sbjct 687 CCAGAATCAGGGCTTCGATACCGGTTTGGCCTACACAAAAGCAGGGGTAATCCTCAGCCT 746
Query 740 GTGAATGCTGCTGGTGTTGAGAGTGGTAGTGATGCTCCTACTTCTTTGATGCCTGGTTTA 799
|||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 747 GTGAATCCTGCTGGTGCTGGGAGTGGTAGTGATGCTCCTACTTCTTTGATGCCTGGTTTA 806
Query 800 TGCGCCAAGGCTGCAGTTTCGTACAAGGTTAACAGAGACTTGTGGAGGCCACAAGAGAAA 859
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 807 TGCGCCAAGGCTGCAGTTTCGTACAAGGCTAACAGAGACTTGTGGAGGCCACAAGAGAAA 866
Query 860 GAAGGCAACACAGAAGAAGAGGATAAACCTGTGTTTCTGCCTTATGATTTACGTCTCAAG 919
|||| |||||||||||| | || || |||| ||||||||||||||||||||||||||||
Sbjct 867 GAAGACAACACAGAAGA-G-GG-TACACCTAAGTTTCTGCCTTATGATTTACGTCTCAAG 923
Query 920 GAGCCTCATGCAGCAATTTCAGGAATAGTAGGAAGCAGCTTGGCAGCTTGGATCACAGGC 979
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 924 GAGCCTCATGCAGCAATTTCAGGAATAGTAGGTAGCAGCTTGGCAGCTTGGATCACAGGC 983
Query 980 CGAGGCATGTTGGTTAATGGCAAGAAGCGGAGTCCGATAAGCGCAGATGTATTTGGTTCT 1039
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 984 CGAGGCATGTTGGTTAATGGCAAGAAGCGGAGTCCAATAAGCGCAGAAGTATTTGGTTCT 1043
Query 1040 GCTTGTTATACGTTCCAAAAAGGACGGTTTAGTAAGTTGTATGGCGATCTTACCCGAGTA 1099
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1044 GCTTGTTATACGTTCCAAAAAGGGCGGTTTAGTAAGTTGTATGGCGATCTAACCCGAGTA 1103
Query 1100 GATGCTCGCGTGGACCTACCCTCAGCTTTTGCCCTTGCTAAAA-AACTCTTCCATGCA-- 1156
|||||||||||||||||||||||||||| |||||| ||||||| || |||||||||||
Sbjct 1104 GATGCTCGCGTGGACCTACCCTCAGCTTCTGCCCTCGCTAAAAGAA-TCTTCCATGCATT 1162
Query 1157 -AG----T----AG-TA--A-CAACTCAGACGACACATTGTGGTCTCCCAGACTCAACCT 1203
|| | || || | ||||||||||||||||||||||||||| |||||||||||
Sbjct 1163 TAGAAGATCGTCAGGTAGTAACAACTCAGACGACACATTGTGGTCTCCTAGACTCAACCT 1222
Query 1204 GATATTCCAGCAACAGGTTGCGGGTCCGATTGTTTTCAAAGTAGACTCGCAGTTTCAGGT 1263
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1223 GATATTCCAGCAACAGGTTGCAGGTCCGATTGTTTTCAAAGTAGACTCGCAGTTTCAGGT 1282
Query 1264 AGGAGCTGCACGCATGGAAGATGTGATATACAGTCTGAATTACTCGTTGAGGCTTCTTGA 1323
||| || ||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 1283 AGGTGCGGCACGCATGGAAGATCTGATATACAGTCTGAATTACTCTTTGAGGCTTCTTGA 1342
Query 1324 GTCTGGCAAAATCGTGGCTTGGTATTCTCCAAAGAGAAAAGAAGGCATGATCGAGCTCCG 1383
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1343 GTCTGGCAAAGTCGTGGCTTGGTATTCTCCAAAGAGAAAAGAAGGCATGATCGAGCTGCG 1402
Query 1384 Agtttttgagttttgattttagtctccgtttat 1416
||||||||||||||||||| |||||| |||||
Sbjct 1403 AGTTTTTGAGTTTTGATTT-AGTCTCTTTTTAT 1434
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64981957970
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5