BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44660.1
Length=1533
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935405 jgi|Araly1|935405|scaffold_403393.1 2294 0.0
> Ahg935405 jgi|Araly1|935405|scaffold_403393.1
Length=1565
Score = 2294 bits (1242), Expect = 0.0
Identities = 1444/1541 (94%), Gaps = 16/1541 (1%)
Strand=Plus/Plus
Query 1 ATCGGTGCCGAGATGGATCACCGGGAAAAGAGTGACCGGCGACTACTGCTATGGTTCTTC 60
||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||
Sbjct 13 ATCGGTGCCGAGATGGATCACCGGGAAAACAATGACCGGCGACTTCTGCTATGGTTCTTC 72
Query 61 GCCGTAGCCACCGCCGTAAAACTCCTTCTCATTCCGTCGTCCAGAAGCACCGATTTCGAG 120
|||||||| ||| |||| ||||| |||||||| || || | |||||||||||||||||||
Sbjct 73 GCCGTAGCTACCACCGTGAAACTTCTTCTCATCCCATCCTACAGAAGCACCGATTTCGAG 132
Query 121 GTCCACCGTAACTGGCTCGCTATCACAAACTCTCTTCCTCTTACCAAATGGTACTTCGAC 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 133 GTTCACCGTAACTGGCTCGCTATCACAAACTCTCTTCCTCTTACCAAATGGTACTTCGAC 192
Query 181 GAGACTAGCCAATGGACACTCGACTATCCTCCTTTCTTCGCCTACTTCGAACGCTTCCTC 240
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 193 GAGACTAGCCAATGGACACTCGATTATCCTCCGTTCTTCGCCTACTTCGAACGCTTCCTC 252
Query 241 TCAATTTTCGCGCGTCTCGTCGATCCCAGGATCGTAGATCTTCAATCAGGACTCGATTAC 300
|||||||||||||||||| | |||||||| || |||||||||||||||||||||||||||
Sbjct 253 TCAATTTTCGCGCGTCTCATTGATCCCAGAATTGTAGATCTTCAATCAGGACTCGATTAC 312
Query 301 A-ATGCCGAATCTGTAATTTACTTCCAACGAATCAGCGTAATCGTCTCAGATCTATGTCT 359
| | ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 313 AGCT-CCGAATCTGTAATTTACTTCCAACGGATCAGCGTAATCGTCTCGGATCTATGTCT 371
Query 360 TCTCTACGGTGTTTATCGATTGACTCGAAAATTAGAACCGTTGAAACGAAATCTGATCTG 419
||||| ||||||||| ||||||||||||||||| |||||| |||| ||||||||||||||
Sbjct 372 TCTCTGCGGTGTTTACCGATTGACTCGAAAATTGGAACCGATGAAGCGAAATCTGATCTG 431
Query 420 CGCATTGGTGATTTGGTCTCCGGGGCTATTGATCGTAGATCACATTCATTTTCAGTATAA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 432 CGCATTGGTGATTTGGTCTCCGGGGCTATTGATCGTAGATCACATTCATTTTCAGTATAA 491
Query 480 TGGATTTCTACTGGGTTGGTTATTGCTTTCGATTTCGTTTCTTCAAGAAGGGAGAGATCT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 492 TGGATTTCTACTGGGTTGGTTATTGCTTTCGATTTCGTTTCTTCAAGAAGGGAGAGATCT 551
Query 540 TTTGGGTGGGTTTTTATTCGCAGTTCTTCTATGCTTTAAGCATTTGTTCGCCGTCACTGC 599
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 552 GTTGGGTGGGTTTTTATTCGCCGTTCTTCTATGCTTTAAGCATTTGTTCGCCGTCGCTGC 611
Query 600 TCCGGTTTACTTTGTTTATCTACTTAGGCATTATTGCTGGTCTGGTTTAGTTACTGGTTT 659
||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||
Sbjct 612 TCCGGTTTACTTTGTTTATTTACTTAGGCATTATTGCTGGTCCGGTTTAGTTACCGGTTT 671
Query 660 CCGACGGCTTGTAACTATTGGTGCGGTGGTTGTGGCGGTTTTTGCTGCTGCCTATGGACC 719
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 672 CCGACGGCTTGTAACTATTGGTGCGGTGGTTGTGGCGGTTTTTGCTGCTGCTTATGGACC 731
Query 720 TTTTATCTATCATGGACAGATACAGCAAGTCATCAGTAGAATGTTTCCTTTCGGGAGAGG 779
|||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||
Sbjct 732 CTTTATCTATCATGGACAGATACTGCAAGTCATCAGTCGAATGTTTCCTTTTGGGAGAGG 791
Query 780 ATTGTGTCATGCATACTGGGCACCTAATTTTTGGGTTTTCTACATAATACTCGACAAAGG 839
|||||| ||||| ||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 792 ATTGTGCCATGCCTACTGGGCACCTAATTTTTGGGTTTTCTATATAATACTTGACAAAGG 851
Query 840 GCTTGCGGTTTTGCTGCGGAAGCTAGGATATGAAATTCAAATTCCTTCCGCATCTTTCAC 899
|||||| |||||||||| ||||| |||| ||||||||| ||||||||||||||||||||
Sbjct 852 GCTTGCCTTTTTGCTGCGAAAGCTCGGATTTGAAATTCAGATTCCTTCCGCATCTTTCAC 911
Query 900 TGGAGGATTAGTTGGAGATTCTTCGCCTTTTGCAGTTCTTCCTCAGATCACGCCATTGAC 959
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 912 TGGAGGATTAGTTGGAGATTCTTCGCCTTTTGCAGTTCTTCCTCAGATCACCCCATTGAC 971
Query 960 AACATTTGCAATGGTATTACTAGCTATATCTCCATGTCTCATCAAAGCCTGGAAAAAACC 1019
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 972 AACATTTGCAATGGTATTACTTGCTATATCTCCATGTCTCATCAAAGCCTGGAAAAAACC 1031
Query 1020 ACACTCGGGGC-TCGTTGCTAGATGGGTAGCTTATGCATATACATGCGGTTTTCTGTTTG 1078
||| | |||| | |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1032 GCACCCTGGGCAT-GTTGCTAGATGGATAGCTTATGCATATACATGCGGTTTTCTGTTTG 1090
Query 1079 GATGGCACGTCCATGAGAAAGCATCGCTTCACTTT-ACCATCCCACTTGCAATCGTTGCA 1137
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 1091 GATGGCACGTCCATGAGAAAGCATCGCTTCA-TTTCACCATCCCACTTGCAATCGTTGCA 1149
Query 1138 GTTCAGAGTCTAGAAGATGCTAAACATTACTTTCTGGTTTCCATAGTCTCTTGCTATTCG 1197
|| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1150 GTGCAGAGTCTAGAAGATGCTAAACATTACTTTCTGGTTTCTATAGTTTCTTGCTATTCG 1209
Query 1198 CTCTATCC-ACTCTTATATGAACCGCAGGAGTACCCGATCAAGGTTCTGTTGCTGTTATT 1256
|||| ||| |||||||||||| |||||||| ||| ||||||||||||||||||||||| |
Sbjct 1210 CTCT-TCCCACTCTTATATGAGCCGCAGGAATACTCGATCAAGGTTCTGTTGCTGTTACT 1268
Query 1257 GCATTCCGTGGTAATGTGGCTCGGCTTTGCAGCTCAATACACAGAT--TA-TAAGGCGCA 1313
||||||| ||||||||||||| ||||||| ||||| |||||| | || ||||| ||
Sbjct 1269 GCATTCCATGGTAATGTGGCTTGGCTTTGTGGCTCAGTACACAAACAATAATAAGGTTCA 1328
Query 1314 GAAGAAGGAGACTAGTGAAATCAAGAGCAAGTTTAGGATTGGATGTTTTGAGAAGAGCTA 1373
|||| || | | ||| | || |||||||||||||||||||||||||||||||||||||||
Sbjct 1329 GAAGGAG-A-A-TAGAGTAAGCAAGAGCAAGTTTAGGATTGGATGTTTTGAGAAGAGCTA 1385
Query 1374 TCTAATGGGTTT-GATTATAGTAGAGATAGTGTCTCAATTCTTGCATCCGTATTTTCTAG 1432
|||||||||||| | |||||||||||||||||||||| ||||||||||| |||| |||||
Sbjct 1386 TCTAATGGGTTTAG-TTATAGTAGAGATAGTGTCTCAGTTCTTGCATCCATATTATCTAG 1444
Query 1433 GTGATAAGTTGCCATTTTTGCCTTTAATGTTGATCTCAACATATTGTACCGTTGGTATTA 1492
||||||| || ||||||||||| ||||||||||||||||||||||||||| |||||| ||
Sbjct 1445 GTGATAAATTTCCATTTTTGCCGTTAATGTTGATCTCAACATATTGTACCATTGGTACTA 1504
Query 1493 TGTACTCTTGGATTTGGCAGCTCCGGAAGATCCTGACATGA 1533
|||||||||||||||||||||||||||||||||||||||||
Sbjct 1505 TGTACTCTTGGATTTGGCAGCTCCGGAAGATCCTGACATGA 1545
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57401999215
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5