BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44670.1
Length=768
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483597 jgi|Araly1|483597|fgenesh2_kg.4__2657__AT2G44670.1 924 0.0
> Ahg483597 jgi|Araly1|483597|fgenesh2_kg.4__2657__AT2G44670.1
Length=680
Score = 924 bits (500), Expect = 0.0
Identities = 635/694 (91%), Gaps = 34/694 (5%)
Strand=Plus/Plus
Query 95 AGCAAATGGCTTCGTATTACTCTGGTTTTTTGGGTTGTGAAGAGCCACACTTTTTGGAAT 154
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 AGCAAATGGCTTCGTATTACTCTGGTTTTTTTAGTTGTGAAGAGCCACACTTTTTGGAAT 60
Query 155 CGTGTTCTCTTTGCCGGAAACACCTTGGTCTTAACTCCGATATCTTCATGTACAGAGGAG 214
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTTGTTCTCTTTGCCGTAAACACCTTGGTCTTAACTCCGATATCTTCATGTACAGAGGAG 120
Query 215 ACAAGGCTTTTTGTAGCAACGAGTGTAGAGAAGAACAGATTGAATCTGATGAAGCTAAGG 274
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACAAGGCCTTTTGTAGCAAAGAGTGTAGAGAAGAACAGATTGAATCTGATGAAGCTAAGG 180
Query 275 AGAGAAAGTGGAAAAAATCTTCAAGATCTCTCCGGAAAAATTCTTCTGAAACTAAAGAAT 334
|||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 181 AGAGAAAGTGGAAAAATTCTTCAAGATCTCTCCGCAAAAAATCTTCTGAAACTAAAGAAT 240
Query 335 CCGCCGCCGGAAACACCGTACGGACAGGAACTCTCGTCGTGGCTTAGTAGAAGCTTCAGT 394
| |||||||| |||||||||||||||||||||||||||||||||||||||||| || | |
Sbjct 241 CTGCCGCCGGTAACACCGTACGGACAGGAACTCTCGTCGTGGCTTAGTAGAAGTTTTAAT 300
Query 395 TACATAA---T---CAAGCAAATAGTCtttttttCTTCT---ATATAAATACCTTTTTGT 445
||||||| | |||||||||||| ||||||| || | ||||||||||||||||||
Sbjct 301 TACATAAAAATTATCAAGCAAATAGTTTTTTTTTTTTTTTTTATATAAATACCTTTTTGT 360
Query 446 CTAAAATCTATAAACCCTCCTAAAACCACTT-ATATCTCCAAAGCCTCTAAAAGATTTGC 504
||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||
Sbjct 361 CTAAAATCTATAAACCCTCCTAAAACCACTTTATATCTCCAAAGC-T--AAAAGATTTGC 417
Query 505 TCTGTTTCTATTGATCTTTCTATGGATCGGAGATAACTAGTTTTCTAATT-CCGGTTGTC 563
|||||||||||| |||||| |||||||||||||| |||||||||| |||| ||| |||||
Sbjct 418 TCTGTTTCTATTCATCTTTTTATGGATCGGAGATGACTAGTTTTCAAATTTCCGATTGTC 477
Query 564 GGAATCTGAGAAATTGTAGATCTGGTTTATGTAAATGAATGTGGAGTTTTGGG-G-GCAG 621
||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 478 GGAATCTGAGAAATTGTAGATCTGGTTTATGTAAATGAATGTGGAGTTTTGGGAGAG-AG 536
Query 622 AGAGAAAGAAAGATGCTAATAATTTT-GGCTGTGTGATGTGATG-G-T--TTT-GTAATC 675
|||||||||||||||| ||||||||| ||||||||||||||||| | | ||| ||||||
Sbjct 537 AGAGAAAGAAAGATGCCAATAATTTTTGGCTGTGTGATGTGATGTGATGGTTTTGTAATC 596
Query 676 TGGGGTTGAAATTTTGTTCGATGTT-CCATAATAAACAGAGCATAACAACTATGTTCTTA 734
||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
Sbjct 597 TGGGGTTGAAATTTTGTTCGATGTTTCCATAATAAACAGAGCATAAC---TATGTTCT-A 652
Query 735 ATAAATATAAATTCAATTTCTGTATCTGCGTGTG 768
|||||| | |||||||| ||||| ||||||
Sbjct 653 ATAAAT-T-----CAATTTCTTTATCTTCGTGTG 680
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28325327331
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5