BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44680.1
Length=1369
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483599 jgi|Araly1|483599|fgenesh2_kg.4__2659__AT2G44680.1 2196 0.0
Ahg486495 jgi|Araly1|486495|fgenesh2_kg.5__2487__AT3G60250.2 841 0.0
Ahg494272 jgi|Araly1|494272|fgenesh2_kg.8__88__AT5G47080.1 366 2e-100
> Ahg483599 jgi|Araly1|483599|fgenesh2_kg.4__2659__AT2G44680.1
Length=1355
Score = 2196 bits (1189), Expect = 0.0
Identities = 1304/1359 (96%), Gaps = 9/1359 (1%)
Strand=Plus/Plus
Query 1 ACAGGGAAAAGCAGAGCActctttatctcttcttctctctttcttctactctGTGATCAA 60
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 ACAAGGAAAAGCAGAGCACTCTTTACCTCTTCTTCTCTCTTTCTTCTACTCTGTGATCAA 60
Query 61 ACTATCG--AAGAAAAAACAAACCCTAGATTTATCCGCCCCTCTTCTTCCTCTGATGATA 118
| ||||| |||||||||||||||||||||||||||||| |||| ||| |||||||||||
Sbjct 61 ATTATCGAAAAGAAAAAACAAACCCTAGATTTATCCGCCTCTCTCCTTTCTCTGATGATA 120
Query 119 AGAAAGTCGAAGACTTTGAGAATCTAAAGCTGAAAAATTTTG-tttttt-ttCATTGAGG 176
|||||||||||||||||||||||||||||||||||| ||||| |||||| ||| ||||||
Sbjct 121 AGAAAGTCGAAGACTTTGAGAATCTAAAGCTGAAAAGTTTTGATTTTTTCTTC-TTGAGG 179
Query 177 GAATCGAATCGAGTTATGTACAAGGATCGGAGTGGAGGAGGAATAATGGGTGGTGGTGGA 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GAATCGAATCGAGTTATGTACAAGGATCGGAGTGGAGGAGGAATAATGGGTGGTGGTGGA 239
Query 237 TCATCGAGATCGGAGATCCTTGGTGGAGCTATTGATCGGAAACGAATCAATGATGCTTTA 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TCATCGAGATCGGAGATCCTTGGTGGAGCTATTGATCGGAAACGAATCAATGATGCTTTA 299
Query 297 GACAAACATCTTAAGAAATCTTCACCTTCTACATCTAGGGTTTTCACTTCTAAGGACAAA 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GACAAACATCTTAAGAAATCTTCACCTTCTACATCTAGGGTTTTCACTTCTAAGGACAAA 359
Query 357 GATTCTGTCCCTTCTACTTCAACTGCTAAATCTCAGCTTCATTCTCGTTCCCCCGATGTT 416
|||||| ||||||||||||| ||||||||||||||||||||||||||||| || |||||
Sbjct 360 GATTCTTTCCCTTCTACTTCTACTGCTAAATCTCAGCTTCATTCTCGTTCACCTGATGTA 419
Query 417 GAATCTGACACGGATAGTGAAGGATCAGATGTGAGTGGTTCAGAAGGTGATGATACCTCT 476
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 420 GAATCTGAAACGGATAGTGAAGGATCAGATGTGAGTGGTTCAGAAGGTGATGATACATCG 479
Query 477 TGGATCTCATGGTTTTGTAATTTGAGAGGGAATGAGTTTTTCTGTGAAGTAGATGAAGAT 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TGGATCTCATGGTTTTGTAATTTGAGAGGGAATGAGTTTTTCTGTGAAGTAGATGAAGAT 539
Query 537 TATATACAAGATGATTTCAATCTCTGTGGTTTGAGTGGTCAAGTTCCTTACTATGATTAT 596
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 540 TATATACAAGATGATTTTAATCTCTGTGGATTGAGTGGTCAAGTTCCTTACTATGATTAT 599
Query 597 GCACTTGATCTCATTTTAGATGTTGAATCATCAAATGGTGATATGTTTACTGAAGAACAG 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GCACTTGATCTCATTTTAGATGTTGAATCATCAAATGGTGATATGTTTACTGAAGAACAG 659
Query 657 CATGAGATGGTGGAATCAGCTGCTGAGATGTTATATGGTCTTATTCATGTTCGTTATATT 716
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AATGAGATGGTGGAATCAGCTGCTGAGATGTTATATGGTCTTATTCATGTTCGTTATATT 719
Query 717 CTCACTACTAAAGGAATGGCTGCTATGATGGAGAAGTATAAGAATTATGATTTCGGGAGA 776
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 720 CTCACTACTAAAGGAATGGCTGCTATGATGGAGAAGTATAAGAATTACGATTTCGGGAGA 779
Query 777 TGCCCCAGAGTTTTCTGTTGCGGACAGTCTTGTCTTCCGGTTGGCCAATCTGATATCCCG 836
|| ||||||||||||||||| || || ||||||||||||||||| |||||||||||||||
Sbjct 780 TGTCCCAGAGTTTTCTGTTGTGGGCAATCTTGTCTTCCGGTTGGGCAATCTGATATCCCG 839
Query 837 AGGTCGAGCACTGTGAAGATATACTGCCCAAAATGCGAGGATATTTACTACCCGCGATCT 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 AGGTCGAGCACTGTGAAGATATACTGCCCAAAATGCGAGGATATTTACTACCCGCGATCT 899
Query 897 AAATACCAAGGCAACATTGATGGAGCTTACTTTGGAACTACTTTCCCTCATTTGTTTCTC 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 AAATACCAAGGCAACATTGATGGAGCTTACTTTGGAACTACTTTCCCTCATTTGTTTCTC 959
Query 957 ATGGCCTATGGGAACATGAAACCGCAGAAGCCGGCTCAAAACTACGTTCCTAAGATCTTT 1016
||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||
Sbjct 960 ATGGCCTATGGGAACATGAAACCACAGAAGCCGGTTCAAAACTATGTTCCTAAGATCTTT 1019
Query 1017 GGCTTTAAGGTACACAACAAACAATGATACTCTCTCCTCTCAACAGTCTTGTGGTTGAAT 1076
|||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||
Sbjct 1020 GGCTTTAAGGTACACAACAAGCAATGATACTCTCTTCTCTCAACAGTCCTGTGGTTGAAT 1079
Query 1077 ACAATCTCGGTGGCTAAACCACCATTCTTCTGATGGTCACGGGTTTGAAATGGATGATAC 1136
||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 ACAATCTTGGCGGCTCAACCACCATTCTTCTGATGGTCACGGGTTTGAAATGGATGATAC 1139
Query 1137 TAAACTGCGTTTGGAGGATGAGAAGAGCTAATGAAGAAAGG-TCGACACTTAAAAGTTTT 1195
|||| |||||||||||||||||||||||||| ||| ||||| || |||||||| |||||
Sbjct 1140 TAAAATGCGTTTGGAGGATGAGAAGAGCTAAAGAA-AAAGGGTCAACACTTAA--GTTTT 1196
Query 1196 TCACTATGTAATCTCAAAAGTTCTAAGTAGAATCTTCAACATAGAACCGTTCTTTGATGG 1255
||||||||||||||| ||||| |||||||||||||||| || ||||||||||||| |||
Sbjct 1197 TCACTATGTAATCTCGGAAGTTGTAAGTAGAATCTTCAATATTGAACCGTTCTTTGGTGG 1256
Query 1256 GTCTTGGGAAATTCTTTACCTGTGAGTAATCAATTAAATCATTTACCAGATGGATGGATT 1315
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 1257 GTCTTGGGAAATTCTTTATCTGTGAGTAATCAATTAAATCATTTACCAGATGGATGGAAT 1316
Query 1316 TTGCTTTGCTTAACTGTTGTCTATAATTGCTGAAAATTT 1354
||||||| ||||||||||||||||||||||||| |||||
Sbjct 1317 TTGCTTTCCTTAACTGTTGTCTATAATTGCTGAGAATTT 1355
> Ahg486495 jgi|Araly1|486495|fgenesh2_kg.5__2487__AT3G60250.2
Length=1249
Score = 841 bits (455), Expect = 0.0
Identities = 713/833 (86%), Gaps = 35/833 (4%)
Strand=Plus/Plus
Query 231 GGTGGATCATCGAGATCGGAGATCCTTGGTGGAGCTATTGATCGGAAACGAATCAATGAT 290
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 138 GGTGGGTCATCGAGATCGGAGATCCTCGGTGGAGCTATTGATCGGAAACGAATCAACGAT 197
Query 291 GC-TTTAGACAA-ACATCTTA-AGAAATCTTC-A----C-CTTCTACATCTAGGGTTTTC 341
|| | | | || | | | || |||||||||| | | | | |||||||||||||||
Sbjct 198 GCACTCA-ATAAGA-AAC-TAGAGAAATCTTCAACTCCCACCACCACATCTAGGGTTTTC 254
Query 342 ACTTCTAAGGACAAAGAT-TCTGTCCCTTCTACTTCAACTGCTAAATCTCAGCTTCATTC 400
||||||| ||||||||| || | | ||| || || ||| | | || || | | ||
Sbjct 255 TCTTCTAAAGACAAAGATCCCTTTTCATTC-ACATCTACT--TCCA-CT--GC-TAAATC 307
Query 401 TC-GTTCCCCCGATGTTGAATCTGACACGGATAGTGAAGGATCAGATGTGAGTGGTTCAG 459
|| | | ||||||||| ||||| || || ||||||||||| |||||||||||||| || |
Sbjct 308 TCAGCT-CCCCGATGTGGAATCGGAAACTGATAGTGAAGGGTCAGATGTGAGTGGATCGG 366
Query 460 AAGGTGATGATACCTCTTGGATCTCATGGTTTTGTAATTTGAGAGGGAATGAGTTT-TTC 518
||||||||||||| || |||||||| |||||||||||||||||||||||||| ||| |||
Sbjct 367 AAGGTGATGATACATCGTGGATCTCTTGGTTTTGTAATTTGAGAGGGAATGA-TTTCTTC 425
Query 519 TGTGAAGTAGATGAAGATTATATACAAGATGATTTCAATCTCTGTGGTTTGAGTGGTCAA 578
|||||||| |||||||| ||||| ||||||||||||||||| ||||| || |||||||||
Sbjct 426 TGTGAAGTCGATGAAGACTATATTCAAGATGATTTCAATCTTTGTGGATTAAGTGGTCAA 485
Query 579 GTTCCTTACTATGATTATGCACTTGATCTCATTTTAGATGTTGAATCATCAAATGGTGAT 638
|||||||||||||| ||||| |||||||||||||||||||| ||||| || || ||||
Sbjct 486 GTTCCTTACTATGAGTATGCTCTTGATCTCATTTTAGATGTGGAATCTTCCAACAGTGAG 545
Query 639 ATGTTTACTGAAGAACAGCATGAGATGGTGGAATCAGCTGCTGAGATGTTATATGGTCTT 698
|||||||||||||||||| |||| |||||||||||||||||||| ||| |||||||||||
Sbjct 546 ATGTTTACTGAAGAACAGAATGAAATGGTGGAATCAGCTGCTGAAATGCTATATGGTCTT 605
Query 699 ATTCATGTTCGTTATATTCTCACTACTAAAGGAATGGCTGCTATGA-TGGAGAAGTATAA 757
|||||||||||||| ||| | |||||||||||||||||||| |||| | |||||||| ||
Sbjct 606 ATTCATGTTCGTTACATTTTGACTACTAAAGGAATGGCTGCAATGACT-GAGAAGTACAA 664
Query 758 GAATTATGATTTCGGGAGATGCCCCAGAGTTTTCTGTTGCGGACAGTCTTGTCTTCCGGT 817
||| | |||||||||||||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 665 GAACTGTGATTTCGGGAGATGCCCGAGAGTTTTCTGTTGCGGTCAGTCTTGTCTTCCAGT 724
Query 818 TGGCCAATCTGATATCCCGAGGTCGAGCACTGTGAAGATATACTGCCCAAAATGCGAGGA 877
||| ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 725 TGGACAATCCGATATCCCGAGATCGAGTACTGTGAAGATATACTGCCCAAAATGCGAGGA 784
Query 878 TATTTACT-ACCCGCGATCTAAATACCAAGGCAACATTGATGGAGCTTACTTTGGAACTA 936
|| | || ||||||||||||||| ||||||||| ||||||||||| ||||||||||| |
Sbjct 785 CATAT-CTTACCCGCGATCTAAATTCCAAGGCAATATTGATGGAGCATACTTTGGAACCA 843
Query 937 CTTTCCCTCATTTGTTTCTC-ATGGCCTATGGGAACATGAAA-CCGCAGAAGCCGGCTCA 994
| |||||||| ||||| || ||| | || |||||| | ||| |||||||| ||| ||||
Sbjct 844 CATTCCCTCACTTGTT-CTTGATGACTTACGGGAACTT-AAAGCCGCAGAAACCGACTCA 901
Query 995 AAACTACGTTCCTAAGATCTTTGGCTTTAAGGTACACAACAAACAATGATACT 1047
||||||||| || || ||||||||||| ||||||||||| | || |||||||
Sbjct 902 AAACTACGTCCCAAAAATCTTTGGCTTCAAGGTACACAA-AC-CA-TGATACT 951
> Ahg494272 jgi|Araly1|494272|fgenesh2_kg.8__88__AT5G47080.1
Length=1220
Score = 366 bits (198), Expect = 2e-100
Identities = 452/572 (79%), Gaps = 28/572 (5%)
Strand=Plus/Plus
Query 411 GATGTTGAATCTGACACGGATAGTGAAGGATCAGATGTGAGTGGTTCAGAAGGTGATGAT 470
|||| |||||| |||||||||||||||| ||| ||||| |||||||| || || || |||
Sbjct 362 GATGATGAATCAGACACGGATAGTGAAGAATCGGATGTTAGTGGTTCTGATGGAGAGGAT 421
Query 471 ACCTCTTGGATCTCATGGTTTTGTAATTTGA-GAGGGAATGAGTT-TTTCTGTGAAGTAG 528
|| || ||||| || |||||||||||| | | |||| || ||||| ||| |||||||| |
Sbjct 422 ACTTCATGGATATCTTGGTTTTGTAATCT-ACGAGGAAACGAGTTCTTT-TGTGAAGTTG 479
Query 529 ATGAAGATTATATACAAGATGA-TTTCAATCTCTGTGGTTTGAGTGGTCAAGTTCCTTAC 587
|||| |||||||| |||||||| ||| || || ||||| | || ||| ||||| |||
Sbjct 480 ATGATGATTATATTCAAGATGACTTT-AACCTGTGTGGACTCAGCAGTCTTGTTCCCTAC 538
Query 588 TATGATTATGCACTTGATCTCATTTTAGATGTTGAATCATCAAATGGTGATATGTTTACT 647
|| || || || |||||| | ||||| ||||||||||| || |||| || ||||||||
Sbjct 539 TACGAGTACGCTCTTGATTTGATTTTGGATGTTGAATCTTCTCATGGAGAGATGTTTACA 598
Query 648 GAAGAACAGCATGAGA-TGGTGGAATCAGCTGCTGAGATG-TTATATGGTCTT-ATTCAT 704
|| |||||| |||| | || | || ||||| ||||||||| || || || || |||||
Sbjct 599 GAGGAACAGAATGA-ATTGATCGAGTCAGCAGCTGAGATGCTT-TACGG-ATTGATTCAC 655
Query 705 GTTCGTTATAT-TCTCACTA-CTAAAGGAATGGCTGCTATGATGGAGAAGTATAAGAATT 762
| |||||| || | | |||| | |||||| ||||||| ||| | || || || || || |
Sbjct 656 GCTCGTTACATAT-TGACTAGC-AAAGGATTGGCTGCGATGTTAGACAAATACAAAAACT 713
Query 763 ATGA-TTTCGGGAGATGCCCCAGAGTTT-TCTGTTGCGGACAGTCTTGTCTTCCGGTTGG 820
|||| ||| || ||||| || ||||||| | || || || || ||||||||||||||||
Sbjct 714 ATGACTTT-GGAAGATGTCCAAGAGTTTAT-TGCTGTGGCCAACCTTGTCTTCCGGTTGG 771
Query 821 CCAATCTGA--TATCC-CGAGGTCGAGCACTGTGAAGATATACTGCCCAAAATGCGAGGA 877
||||| || || || ||| || ||||||||||||||||| ||||| |||||||| ||
Sbjct 772 TCAATCGGACTTA-CCTCGA--TCTAGCACTGTGAAGATATATTGCCCGAAATGCGAAGA 828
Query 878 TATTTACTACCCGCGATCTAAATACCAAGGCAACATTGATGGAGCTTACTTTGGAACTAC 937
||||| ||||| || || || || ||||||||||||||||||||||||||||| || ||
Sbjct 829 CATTTATTACCCACGGTCGAAGTATCAAGGCAACATTGATGGAGCTTACTTTGGGACAAC 888
Query 938 -TTTCCCTCATTTGTTTCTCATGGCCTATGGG 968
||||| ||| |||| || ||| | ||||||
Sbjct 889 ATTTCCA-CATCTGTTCCTGATGACTTATGGG 919
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51237200448
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5