BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44690.1
Length=810
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322132 jgi|Araly1|322132|fgenesh1_pm.C_scaffold_4002189 865 0.0
> Ahg322132 jgi|Araly1|322132|fgenesh1_pm.C_scaffold_4002189
Length=618
Score = 865 bits (468), Expect = 0.0
Identities = 579/631 (92%), Gaps = 14/631 (2%)
Strand=Plus/Plus
Query 13 ATGTCAGCTTCAATGGCTGCAACATCAACATCATCAGCAACAGCTACAACGTTTATAAAG 72
|||||||||||| ||||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 1 ATGTCAGCTTCAGTGGCTGCAACAGCAACACCATCAACAACAGCTACAACGTTTATAAAG 60
Query 73 TGTGTCACTGTTGGCGATGGAGCTGTGGGCAAAACTTGTCTTCTTATTTCCTACACCAGC 132
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 TGTGTCACTGTTGGCGATGGAGCTGTGGGCAAAACTTGTCTTCTTATCTCCTACACCAGC 120
Query 133 AACACGTTCCCCACTGATTATGTTCCAACAGTGTTCGACAATTTCAATGCTAATGTTTTA 192
||||| || || |||||||||||||||||||||||||||||||| | ||| |||||||||
Sbjct 121 AACACTTTTCCTACTGATTATGTTCCAACAGTGTTCGACAATTTTAGTGCAAATGTTTTA 180
Query 193 GTCGATGGTAAAACTGTCAATCTGGGTCTCTGGGATACTGCTGGTCAAGAAGACTACAAT 252
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 GTCGATGGCAAAACTGTCAATCTGGGACTCTGGGATACTGCTGGTCAAGAAGACTACAAT 240
Query 253 AGGGTTAGACCATTGAGTTACAGAGGAGCAGATGTTTTCATTCTTGCCTTCTCACTTATT 312
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 241 AGGCTTAGACCATTGAGTTACAGAGGAGCAGATGTTTTCATTCTTGCTTTCTCACTTATT 300
Query 313 AGCAGGCCTAGCTTTGAGAACATTGCTAAAAAGTGGGTACCCGAGCTGAGACATTATGCC 372
||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 301 AGCAGGCCTAGCTTTGAGAACATTGCTAAAAAG------C------TGAGACATTATGCC 348
Query 373 CCGACTGTGCCTATTGTTCTTGTGGGAACCAAATCAGATCTAAGAGACAACATGCAGTTC 432
|| || |||||||||||||||||||||||||||| ||||||||||||| ||| |||||||
Sbjct 349 CCAACCGTGCCTATTGTTCTTGTGGGAACCAAATTAGATCTAAGAGACGACAAGCAGTTC 408
Query 433 CCAAAGAATTATCCAGGTGCTTGCACAATCTTCC-CAGAACAGGGTCAAGAACTAAGAAA 491
|||| |||||||||||||||||||||||||| || ||||||| |||||||| ||||||||
Sbjct 409 CCAATGAATTATCCAGGTGCTTGCACAATCT-CCACAGAACAAGGTCAAGAGCTAAGAAA 467
Query 492 GGAAATAGGAGCATTAGCATACATAGAGTGCAGCTCAAAAGCACAAATGAACGTAAAAGC 551
||| ||||||||||||||||| || ||||||||||||||| ||||| |||| |||||||
Sbjct 468 GGAGATAGGAGCATTAGCATATATTGAGTGCAGCTCAAAAACACAACTGAATGTAAAAGG 527
Query 552 CGTGTTTGATGAAGCGATCAAAGTAGTTTTACATCCTCCTTCAAAGACTAAGAAGCGAAA 611
||| ||||||| ||| || |||||||| ||||| |||||||||||||||||||||| |||
Sbjct 528 CGTATTTGATGCAGCCATAAAAGTAGTATTACAGCCTCCTTCAAAGACTAAGAAGCAAAA 587
Query 612 GAGAAAGATCGGTTTATGCCATGTTCTTTGA 642
||||||||| |||||||||||||||||||||
Sbjct 588 GAGAAAGATTGGTTTATGCCATGTTCTTTGA 618
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29926489845
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5