BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44730.1
Length=1233
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483602 jgi|Araly1|483602|fgenesh2_kg.4__2662__AT2G44730.1 1676 0.0
> Ahg483602 jgi|Araly1|483602|fgenesh2_kg.4__2662__AT2G44730.1
Length=1257
Score = 1676 bits (907), Expect = 0.0
Identities = 1169/1281 (91%), Gaps = 75/1281 (6%)
Strand=Plus/Plus
Query 1 ATGTCCGATCCGGATTCTCCGATGAACCACGATCCAATTCCGGATCCATCACC--TT--- 55
||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1 ATGTCCGATCCAGATTCTCCGATGAACCACGATTCAATTCCGGATCCATCACCGGTTCGG 60
Query 56 -T---AGC-TC-CC-CTCCCGCCACCATTATCTTCCTCCGCTCATGACGATGCGTCAACC 108
| | | || || ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 ATCCAATCTTCTCCACTCCCGCCACCATTATCTTCCTCCGCTCAAGACGATGCGTCAACC 120
Query 109 GAACCAGCTTCCAACACAGATCTGAAGAGCGCCTCCATCCCCACCGCGTCCAAGAACTCT 168
||||| |||||| |||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 121 GAACCGGCTTCCGTCACAGATCTGAAGAGCGCCTCCATCCCCGCCGCGTCCAAAAACTCT 180
Query 169 AGGCGGTTACCTCCGCCGTGCTGGTCTCTGGAAGAGACGATCGCGC-TAATTGACGCGTA 227
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 181 AGGCGGTTACCTCCGCCGTGCTGGTCTCTGGAAGAGACGATCGC-CTTAATTGACGCGTA 239
Query 228 CAGAGACAAATGGTACGCTCTTAACCGTGGAAATCTAAAGGCGAATCACTGGGAAGAAGT 287
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 240 CAGAGACAAATGGTACGCTCTGAACCGTGGAAATCTCAAGGCGAATCACTGGGAAGAAGT 299
Query 288 TGCAGAAGCGGTTGGTGCTAACTGCCCCGACGTGATTC-TT-AAGAAAACCGCGGTTCAG 345
||||||||||||||||||||| || |||||||||| | || ||||||||||||||||||
Sbjct 300 TGCAGAAGCGGTTGGTGCTAATTGTCCCGACGTGA--CGTTGAAGAAAACCGCGGTTCAG 357
Query 346 TGCCGTCACAAGATGGAGAAGCTCCGGAAAAGGTACCGGACCGAGATACAGAGAGCTAGA 405
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 358 TGCCGTCACAAGATGGAGAAGCTCCGGAAAAGGTACCGGACCGAGATCCAGAGAGCTAGA 417
Query 406 TCTGTGCCGGTGGCGAGGTTTATATCGTCTTGGGTTCATTTTAAGCGAATGGAAGCTATG 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TCTGTGCCGGTGGCGAGGTTTATATCGTCTTGGGTTCATTTTAAGCGAATGGAAGCTATG 477
Query 466 GAGAATAGACCAGAGATTAAACAAGGTAACGAAAGTGGAGATGATGATGATCACGATGAT 525
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 478 GAGAATAGACCAGAGATCAAACAAGGTAACGAAAGTGGAGATGATGAT---CACGATGAT 534
Query 526 GGTAATTACACAGCTAGGTATCAATTCAG---CGGCGGAGGAGGAGGAG----C---G-- 573
| |||||||||||||||||| |||||| ||||||||||||||||| | |
Sbjct 535 GCCAATTACACAGCTAGGTATGAATTCAAAAACGGCGGAGGAGGAGGAGGAGGCTTAGTC 594
Query 574 --A-GGACGACGCCGAGGTTCTTTAACAGGAATGGTACAGCTGGATCTGGTGGTGGTGGA 630
| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 595 CCAAGGACGACGCCGAGGTTCTTTAATAGGAATGGTACGGCTGGATCTGGTGGTGGTGGA 654
Query 631 GGGAGTAGTAGTAGCGGCGGGATTCGAATTCGGATACCGACTGGAGTGAGTATAGCACAG 690
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 655 GGGAGTAGTAGTAGCGGCGGAATTCGAATTCGGATACCGACTGGAGTGAGTATAGCACAG 714
Query 691 CCTGGACCGAGGTTTCCCGGTAAGATTGATCAGAAATACACGGCGAGTCCAAGTGCTGGT 750
|| |||||||| | |||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 715 CCGGGACCGAGATATCCCGGTAAGGTTGATCAGAAATACACGGCGAGTCCAAGTTCTGGT 774
Query 751 GTGAGTTCAAATCCGAGAGCTGGTCGTGGTATCGGAGCAGGAGGATCTAGTTACGGTGCT 810
|||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 775 GTGAGTTCAAATCCGAGACCTGGTCGTGGTATCGGAGCAGGAGGATCTAACTACGGTGCT 834
Query 811 AGAGTTGTGAGAATTCCTGAAGG--A-G-GAG-GGA--A---A--CGAGGGAGAGAGATG 858
||||||||||||||||||||||| | | ||| ||| | | |||||||||||||||
Sbjct 835 AGAGTTGTGAGAATTCCTGAAGGGGAAGAGAGAGGAGGAGGGAAACGAGGGAGAGAGATG 894
Query 859 ATGATGAAGACGGAGGAGGATGAT-A-A-TGATCCAATGGTGGAGATAGCTAGTGCGATA 915
|||||||||||||||||||||||| | | ||||||||||||||||||||| |||||||||
Sbjct 895 ATGATGAAGACGGAGGAGGATGATGATAATGATCCAATGGTGGAGATAGCGAGTGCGATA 954
Query 916 AAGCTGCTTGGAGATACGTTGGTGAGAACAGAGCAGACGAGAATGGAGATGACGAGAGAG 975
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 955 AAGCTGCTTGGAGATACGTTTGTGAGAACAGAGCAGACGAGAATGGAGATGACGAGAGAG 1014
Query 976 ATAGAAGCGATGAGGATGGATACAGAGATGAAGAGGACAAAGATGATTTTGGAATCTCAA 1035
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1015 ATAGAAGCGATGAGGATGGATACAGAGATGAAGAGGACCAAGATGATTTTGGAATCGCAA 1074
Query 1036 CAACGAATTGTGGAAGCGTTTGCTAAAAGCTTATCAGATTATACTACTACGGAGGAGCAA 1095
||||||||||||||||| ||||||||||||||||||||| | | ||| | | |||||
Sbjct 1075 CAACGAATTGTGGAAGCATTTGCTAAAAGCTTATCAGAT-A-A-TAC-A-G-AGGAG--- 1125
Query 1096 GACAAGAAGAAGAAAGCTAGATAGAAGAATGTCGTCGTCTTTAGCT---GACTCCTGAT- 1151
||||||||||||||||| | | ||||||||||||| | || |||| ||||| ||||
Sbjct 1126 GACAAGAAGAAGAAAGC-A-A--GAAGAATGTCGTC-T-TT-AGCTTCTGACTCTTGATG 1178
Query 1152 --CAAAAGGCGCCATAAATTAAATTAATGTGTGATTTTCAAATTTTCTAGATTGTAGAAA 1209
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 1179 ATCAAAAGGCGCCATAAATTAAATTA-TGTGTGATTTTCAAATTT-CTAGATTGTAGAAA 1236
Query 1210 TCGAAAGAGCTTTTATTAGCT 1230
||||||||||||| |||||||
Sbjct 1237 TCGAAAGAGCTTTAATTAGCT 1257
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46052483736
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5