BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44735.1
Length=1104
Score E
Sequences producing significant alignments: (Bits) Value
Ahg346283 jgi|Araly1|346283|fgenesh1_pg.C_scaffold_4002625 678 0.0
Ahg946899 jgi|Araly1|946899|scaffold_703128.1 276 3e-73
Ahg952098 jgi|Araly1|952098|scaffold_37500001.1 254 1e-66
> Ahg346283 jgi|Araly1|346283|fgenesh1_pg.C_scaffold_4002625
Length=873
Score = 678 bits (367), Expect = 0.0
Identities = 430/458 (94%), Gaps = 13/458 (3%)
Strand=Plus/Plus
Query 294 AAAAAGCGAGTCCTATTATGCTAGTACACTTGTTCTTAACCCGTTTACCCGTGAGAGCTT 353
|||||||| | ||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 246 AAAAAGCGGGCCCTTTTATGCTAGTACACTTCTTCTTAACCCGTTTACCCGTGAGAGCTT 305
Query 354 CTACTTACCCCCAAGGAGACACGAACACAGATCCCGTTTTTTAGCTTTCTCAGCCGCTCC 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 CTACTTACCCCCAAGGAGACACGAACACAGATCCCGTTTTTTAGCTTTCTCAGCCGCTCC 365
Query 414 TACATCACCTAGCTGTATGGTCATCTCCTACACCCAACTACGATCCTGCGGATCTGTTTT 473
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 366 TACATCACCTAGCTGTATGGTCATCTCCTACATCCAACTACGATCCTGCGGATCTGTTGT 425
Query 474 GATCGATACTTGGCGGCCTGGTGAAACCGAATGGACTACACACTGCTTTGAGAACCAGTT 533
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 426 CATCGATACTTGGCGGCCTGGTGAAACCGAGTGGACTACACACTGCTTTGAGAACCAGTT 485
Query 534 ACCCTTTCGCTATTGGTCCAAATGTGTCTTCTCCAATGGCATGTTCTTCTGTCTCAGTGA 593
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 486 ACCCTTTCGCTATTGGCCCAAATGTGTCTTCTCCAATGGCATGTTCTACTGTCTCAGTGA 545
Query 594 ATGCGGCTATCTTGGGGTTTTCGACCCCTCT---AAAGCA--A-CGTGGAATATTCTTCC 647
||||||||||||||||||||||||||||||| |||||| | | ||||||||||||||
Sbjct 546 ATGCGGCTATCTTGGGGTTTTCGACCCCTCTTCTAAAGCAGCAACATGGAATATTCTTCC 605
Query 648 AGTGAAACCATGTCCGGCCTTTTATCAGTTTGAGTTTGATTACACTCATAACCCAGTGTT 707
|||||||||||||||||||||| |||||| | | |||||| |||||| |||||||||
Sbjct 606 AGTGAAACCATGTCCGGCCTTTGATCAGT---A-T--GATTACTCTCATAGCCCAGTGTT 659
Query 708 TATGACGGAGCATGAAGGAGACATCTTTGATATT-ATA 744
||||||||||||||||||||||||||||| |||| |||
Sbjct 660 TATGACGGAGCATGAAGGAGACATCTTTGTTATTTATA 697
> Ahg946899 jgi|Araly1|946899|scaffold_703128.1
Length=355
Score = 276 bits (149), Expect = 3e-73
Identities = 226/263 (86%), Gaps = 6/263 (2%)
Strand=Plus/Plus
Query 410 CTCCTACATCACCTAGCTGTATGGTCATCTCCTACACCCAACTA-CGATCCTGCGGATCT 468
||||||||||| ||||||||||||| ||||| ||| ||||| || | || |||| ||||
Sbjct 1 CTCCTACATCAGCTAGCTGTATGGTGATCTCGTACCCCCAAATATC-TTCATGCGCATCT 59
Query 469 GTTTTGATCGATACTTGGCGGCCTGGTGAAACCGAATGGACTACACACTGCTTTGAGAAC 528
||| |||||||||||||||||||||||||||||| |||||| || || || ||| ||||
Sbjct 60 GTTGTGATCGATACTTGGCGGCCTGGTGAAACCGTATGGACCACCCATTGGTTTAAGAAT 119
Query 529 CAGTTACCCTTTCGC-TATTGGTCCAAATGTGTCTTCTCCAATGGCATGTTCTTCTGTCT 587
||||||||| ||| ||| || | |||||||||||||| ||||| ||||||| ||||||
Sbjct 120 CAGTTACCCAAGCGCATATGGGGC-AAATGTGTCTTCTCAAATGGTATGTTCTACTGTCT 178
Query 588 CAGTGAA-TGCGGCTATCTTGGGGTTTTCGACCCCTCTAAAGCAACGTGGAATATTCTTC 646
|||| | |||||||| ||||||||||||||||| |||||| |||| |||||||||||||
Sbjct 179 CAGT-ACCTGCGGCTACCTTGGGGTTTTCGACCCGTCTAAATCAACCTGGAATATTCTTC 237
Query 647 CAGTGAAACCATGTCCGGCCTTT 669
| |||||||||||||| ||||||
Sbjct 238 CTGTGAAACCATGTCCCGCCTTT 260
Score = 60.2 bits (32), Expect = 3e-08
Identities = 38/41 (93%), Gaps = 0/41 (0%)
Strand=Plus/Plus
Query 700 CCAGTGTTTATGACGGAGCATGAAGGAGACATCTTTGATAT 740
||||| || |||||||||||||||||||||||||||| |||
Sbjct 273 CCAGTATTGATGACGGAGCATGAAGGAGACATCTTTGTTAT 313
> Ahg952098 jgi|Araly1|952098|scaffold_37500001.1
Length=346
Score = 254 bits (137), Expect = 1e-66
Identities = 222/263 (84%), Gaps = 6/263 (2%)
Strand=Plus/Plus
Query 410 CTCCTACATCACCTAGCTGTATGGTCATCTCCTACACCCAACTA-CGATCCTGCGGATCT 468
||||||||||| ||||||||||||| ||||| ||| ||||| || | || |||| ||||
Sbjct 1 CTCCTACATCAGCTAGCTGTATGGTGATCTCGTACCCCCAAATATC-TTCATGCGCATCT 59
Query 469 GTTTTGATCGATACTTGGCGGCCTGGTGAAACCGAATGGACTACACACTGCTTTGAGAAC 528
||| |||||||||||||||||||||||||||||| |||||| || || || ||| ||||
Sbjct 60 GTTGTGATCGATACTTGGCGGCCTGGTGAAACCGTATGGACCACCCATTGGTTTAAGAAT 119
Query 529 CAGTTACCCTTTCGC-TATTGGTCCAAATGTGTCTTCTCCAATGGCATGTTCTTCTGTCT 587
| |||||| | | ||| || | |||||||||||||| ||||| ||||||| ||||||
Sbjct 120 AAATTACCCAAGCACATATGGGGC-AAATGTGTCTTCTCAAATGGTATGTTCTACTGTCT 178
Query 588 CAGTGAA-TGCGGCTATCTTGGGGTTTTCGACCCCTCTAAAGCAACGTGGAATATTCTTC 646
|||| | |||||||| ||||||||||||||||| |||||| |||| |||||||||||||
Sbjct 179 CAGT-ACCTGCGGCTACCTTGGGGTTTTCGACCCGTCTAAATCAACCTGGAATATTCTTC 237
Query 647 CAGTGAAACCATGTCCGGCCTTT 669
| |||||||||||||| |||||
Sbjct 238 CTGTGAAACCATGTCCCACCTTT 260
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41134627443
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5