BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G44735.1 Length=1104 Score E Sequences producing significant alignments: (Bits) Value Ahg346283 jgi|Araly1|346283|fgenesh1_pg.C_scaffold_4002625 678 0.0 Ahg946899 jgi|Araly1|946899|scaffold_703128.1 276 3e-73 Ahg952098 jgi|Araly1|952098|scaffold_37500001.1 254 1e-66 > Ahg346283 jgi|Araly1|346283|fgenesh1_pg.C_scaffold_4002625 Length=873 Score = 678 bits (367), Expect = 0.0 Identities = 430/458 (94%), Gaps = 13/458 (3%) Strand=Plus/Plus Query 294 AAAAAGCGAGTCCTATTATGCTAGTACACTTGTTCTTAACCCGTTTACCCGTGAGAGCTT 353 |||||||| | ||| |||||||||||||||| |||||||||||||||||||||||||||| Sbjct 246 AAAAAGCGGGCCCTTTTATGCTAGTACACTTCTTCTTAACCCGTTTACCCGTGAGAGCTT 305 Query 354 CTACTTACCCCCAAGGAGACACGAACACAGATCCCGTTTTTTAGCTTTCTCAGCCGCTCC 413 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 306 CTACTTACCCCCAAGGAGACACGAACACAGATCCCGTTTTTTAGCTTTCTCAGCCGCTCC 365 Query 414 TACATCACCTAGCTGTATGGTCATCTCCTACACCCAACTACGATCCTGCGGATCTGTTTT 473 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | Sbjct 366 TACATCACCTAGCTGTATGGTCATCTCCTACATCCAACTACGATCCTGCGGATCTGTTGT 425 Query 474 GATCGATACTTGGCGGCCTGGTGAAACCGAATGGACTACACACTGCTTTGAGAACCAGTT 533 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 426 CATCGATACTTGGCGGCCTGGTGAAACCGAGTGGACTACACACTGCTTTGAGAACCAGTT 485 Query 534 ACCCTTTCGCTATTGGTCCAAATGTGTCTTCTCCAATGGCATGTTCTTCTGTCTCAGTGA 593 |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| Sbjct 486 ACCCTTTCGCTATTGGCCCAAATGTGTCTTCTCCAATGGCATGTTCTACTGTCTCAGTGA 545 Query 594 ATGCGGCTATCTTGGGGTTTTCGACCCCTCT---AAAGCA--A-CGTGGAATATTCTTCC 647 ||||||||||||||||||||||||||||||| |||||| | | |||||||||||||| Sbjct 546 ATGCGGCTATCTTGGGGTTTTCGACCCCTCTTCTAAAGCAGCAACATGGAATATTCTTCC 605 Query 648 AGTGAAACCATGTCCGGCCTTTTATCAGTTTGAGTTTGATTACACTCATAACCCAGTGTT 707 |||||||||||||||||||||| |||||| | | |||||| |||||| ||||||||| Sbjct 606 AGTGAAACCATGTCCGGCCTTTGATCAGT---A-T--GATTACTCTCATAGCCCAGTGTT 659 Query 708 TATGACGGAGCATGAAGGAGACATCTTTGATATT-ATA 744 ||||||||||||||||||||||||||||| |||| ||| Sbjct 660 TATGACGGAGCATGAAGGAGACATCTTTGTTATTTATA 697 > Ahg946899 jgi|Araly1|946899|scaffold_703128.1 Length=355 Score = 276 bits (149), Expect = 3e-73 Identities = 226/263 (86%), Gaps = 6/263 (2%) Strand=Plus/Plus Query 410 CTCCTACATCACCTAGCTGTATGGTCATCTCCTACACCCAACTA-CGATCCTGCGGATCT 468 ||||||||||| ||||||||||||| ||||| ||| ||||| || | || |||| |||| Sbjct 1 CTCCTACATCAGCTAGCTGTATGGTGATCTCGTACCCCCAAATATC-TTCATGCGCATCT 59 Query 469 GTTTTGATCGATACTTGGCGGCCTGGTGAAACCGAATGGACTACACACTGCTTTGAGAAC 528 ||| |||||||||||||||||||||||||||||| |||||| || || || ||| |||| Sbjct 60 GTTGTGATCGATACTTGGCGGCCTGGTGAAACCGTATGGACCACCCATTGGTTTAAGAAT 119 Query 529 CAGTTACCCTTTCGC-TATTGGTCCAAATGTGTCTTCTCCAATGGCATGTTCTTCTGTCT 587 ||||||||| ||| ||| || | |||||||||||||| ||||| ||||||| |||||| Sbjct 120 CAGTTACCCAAGCGCATATGGGGC-AAATGTGTCTTCTCAAATGGTATGTTCTACTGTCT 178 Query 588 CAGTGAA-TGCGGCTATCTTGGGGTTTTCGACCCCTCTAAAGCAACGTGGAATATTCTTC 646 |||| | |||||||| ||||||||||||||||| |||||| |||| ||||||||||||| Sbjct 179 CAGT-ACCTGCGGCTACCTTGGGGTTTTCGACCCGTCTAAATCAACCTGGAATATTCTTC 237 Query 647 CAGTGAAACCATGTCCGGCCTTT 669 | |||||||||||||| |||||| Sbjct 238 CTGTGAAACCATGTCCCGCCTTT 260 Score = 60.2 bits (32), Expect = 3e-08 Identities = 38/41 (93%), Gaps = 0/41 (0%) Strand=Plus/Plus Query 700 CCAGTGTTTATGACGGAGCATGAAGGAGACATCTTTGATAT 740 ||||| || |||||||||||||||||||||||||||| ||| Sbjct 273 CCAGTATTGATGACGGAGCATGAAGGAGACATCTTTGTTAT 313 > Ahg952098 jgi|Araly1|952098|scaffold_37500001.1 Length=346 Score = 254 bits (137), Expect = 1e-66 Identities = 222/263 (84%), Gaps = 6/263 (2%) Strand=Plus/Plus Query 410 CTCCTACATCACCTAGCTGTATGGTCATCTCCTACACCCAACTA-CGATCCTGCGGATCT 468 ||||||||||| ||||||||||||| ||||| ||| ||||| || | || |||| |||| Sbjct 1 CTCCTACATCAGCTAGCTGTATGGTGATCTCGTACCCCCAAATATC-TTCATGCGCATCT 59 Query 469 GTTTTGATCGATACTTGGCGGCCTGGTGAAACCGAATGGACTACACACTGCTTTGAGAAC 528 ||| |||||||||||||||||||||||||||||| |||||| || || || ||| |||| Sbjct 60 GTTGTGATCGATACTTGGCGGCCTGGTGAAACCGTATGGACCACCCATTGGTTTAAGAAT 119 Query 529 CAGTTACCCTTTCGC-TATTGGTCCAAATGTGTCTTCTCCAATGGCATGTTCTTCTGTCT 587 | |||||| | | ||| || | |||||||||||||| ||||| ||||||| |||||| Sbjct 120 AAATTACCCAAGCACATATGGGGC-AAATGTGTCTTCTCAAATGGTATGTTCTACTGTCT 178 Query 588 CAGTGAA-TGCGGCTATCTTGGGGTTTTCGACCCCTCTAAAGCAACGTGGAATATTCTTC 646 |||| | |||||||| ||||||||||||||||| |||||| |||| ||||||||||||| Sbjct 179 CAGT-ACCTGCGGCTACCTTGGGGTTTTCGACCCGTCTAAATCAACCTGGAATATTCTTC 237 Query 647 CAGTGAAACCATGTCCGGCCTTT 669 | |||||||||||||| ||||| Sbjct 238 CTGTGAAACCATGTCCCACCTTT 260 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41134627443 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5