BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44740.1
Length=1002
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483603 jgi|Araly1|483603|fgenesh2_kg.4__2663__AT2G44740.1 1297 0.0
Ahg887901 jgi|Araly1|887901|Al_scaffold_0766_1 538 3e-152
> Ahg483603 jgi|Araly1|483603|fgenesh2_kg.4__2663__AT2G44740.1
Length=946
Score = 1297 bits (702), Expect = 0.0
Identities = 829/887 (93%), Gaps = 21/887 (2%)
Strand=Plus/Plus
Query 85 CACACaaaaaaaTGGCGGAACTTGAGAATCCAAGTGTAATGTCGAAGCTGATAGCATTCT 144
|||||| |||||||||||| |||||||| |||||||||||||||||||| ||||||||||
Sbjct 77 CACACACAAAAATGGCGGAGCTTGAGAACCCAAGTGTAATGTCGAAGCTAATAGCATTCT 136
Query 145 TATCTTCATTGCTAGAGCGAGTTGCTGAGTCAAACGATCTGACCCGACGAGTCGCGACTC 204
|||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||
Sbjct 137 TATCTTCATTGCTAGAGCGAGTTGCTGAGTCAAACGATCTGACCAGGCGAGTCACGACTC 196
Query 205 AGTCACAGAGAGTTTCGGTGTTTCATGGACTGAGTCGACCAACGATAACGATTCAGAGCT 264
|||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||
Sbjct 197 AGTCACAGAGAGTTTCGGTGTTCCATGGATTGAGTCGACCAACCATAACGATTCAGAGCT 256
Query 265 ATCTAGAGAGGATCTTCAAATACGCAAATTGTAGTCCTTCTTGCTTCGTCGTTGCTTACG 324
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 257 ATCTACAGAGGATCTTCAAATACGCAAATTGTAGTCCTTCTTGCTTCGTCGTGGCTTACG 316
Query 325 TTTATCTCGATCGTTTCACTCACAGACAACCTTCACTTCCCATCAATTCCTTTAACGTCC 384
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 317 TTTATCTCGACCGTTTCACTCACAGACAACCTTCACTTCCCATCAATTCCTTTAATGTCC 376
Query 385 ATCGTCTTCTCATCACTAGTGTCATGGTCGCTGCTAAATTCCTCGATGATCTGTACTACA 444
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 377 ATCGTCTTCTCATCACCAGTGTCATGGTCGCTGCTAAATTCCTCGATGATCTGTACTACA 436
Query 445 ACAATGCGTATTACGCGAAAGTGGGAGGAATAAGCACGAAGGAGATGAATTTTCTAGAGC 504
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 437 ACAATGCGTATTACGCGAAAGTGGGAGGAATAAGCACGAAAGAGATGAATTTTCTGGAGC 496
Query 505 TGGATTTCTTATTCGGGTTAGGATTTGAATTAAACGTGACGCCAAACACATTCAACGCCT 564
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 497 TGGATTTCTTATTCGGGTTAGGATTTGAATTAAACGTGACTCCAAACACATTCAACGCCT 556
Query 565 ACTTCTCTTATCTTCAAAAGGAAATGACTCTTCTTCAACCTCTCTCTCTCGTTGTTGTCC 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 557 ACTTCTCTTATCTTCAAAAGGAAATGACTCTTCTTCAACCTCTCTCTCTCGTTGTTGTCC 616
Query 625 CATCATCAAGATCTCTCATTACCTTCAACGACGATGAAGCTTCTCATCAGaaacaacaac 684
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 617 CATCATCAAGATCTGTCATTACCTTCAACGACGATGAAGCTTCTCATCAGAAACAACAAC 676
Query 685 aacaacaactcgctgtttgaatcacaacaaaatccaaaaaacaaatctaaatctctttct 744
|||||| ||||||||| |||||||||||||| | | ||||||| |
Sbjct 677 AACAAC---TCGCTGTTTAAATCACAACAAAATTT----------T-TG--TCTCTTTAT 720
Query 745 gtctctttatctttctttaaaa-atGAATTGTGTAGTTGTAGATGATGTAGAGATTAGTC 803
| ||| || || | |||| |||||||||||||||||||||||||||||||||||||
Sbjct 721 --CAATTTCTCCTT-TAAAAAATATGAATTGTGTAGTTGTAGATGATGTAGAGATTAGTC 777
Query 804 GGCAGGGACTCTTATCTTGTCTTAATCAAATCCTGATTAAGAATAAATAAGAAAATTCAA 863
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 778 GGCAGGGACTCTGATCTTGTCTTAATCAAATCTTGATTAAGAATAAATAAGAAATTTCAA 837
Query 864 AATCAACCAGTAAGTTCTTGTCTATCTCTTTCTCTAGATGTGGACAGATGGGAAATTAAT 923
||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||| ||
Sbjct 838 AATCAACCAGTAAGTTCTTGTCTATCTCTATCTCTAGATGTGGACCGATGAGAAATTTAT 897
Query 924 CTTT-ACAGGCTGGCTGGCTAAAGAATTTAAATGTCATTAGTTAAAT 969
|||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 CTTTTACAGGCTGGCTGGCTAAAGAATTTAAATGTCATTAGTTAAAT 944
> Ahg887901 jgi|Araly1|887901|Al_scaffold_0766_1
Length=339
Score = 538 bits (291), Expect = 3e-152
Identities = 323/339 (95%), Gaps = 0/339 (0%)
Strand=Plus/Plus
Query 96 ATGGCGGAACTTGAGAATCCAAGTGTAATGTCGAAGCTGATAGCATTCTTATCTTCATTG 155
|||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGCGGAGCTTGAGAACCCAAGTGTAATGTCGAAGCTAATAGCATTCTTATCTTCATTG 60
Query 156 CTAGAGCGAGTTGCTGAGTCAAACGATCTGACCCGACGAGTCGCGACTCAGTCACAGAGA 215
||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||
Sbjct 61 CTAGAGCGAGTTGCTGAGTCAAACGATCTGACCAGGCGAGTCACGACTCAGTCACAGAGA 120
Query 216 GTTTCGGTGTTTCATGGACTGAGTCGACCAACGATAACGATTCAGAGCTATCTAGAGAGG 275
||||||||||| |||||| ||||||||||||| ||||||||||||||||||||| |||||
Sbjct 121 GTTTCGGTGTTCCATGGATTGAGTCGACCAACCATAACGATTCAGAGCTATCTACAGAGG 180
Query 276 ATCTTCAAATACGCAAATTGTAGTCCTTCTTGCTTCGTCGTTGCTTACGTTTATCTCGAT 335
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 181 ATCTTCAAATACGCAAATTGTAGTCCTTCTTGCTTCGTCGTGGCTTACGTTTATCTCGAC 240
Query 336 CGTTTCACTCACAGACAACCTTCACTTCCCATCAATTCCTTTAACGTCCATCGTCTTCTC 395
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 241 CGTTTCACTCACAGACAACCTTCACTTCCCATCAAGTCCTTTAATGTCCATCGTCTTCTC 300
Query 396 ATCACTAGTGTCATGGTCGCTGCTAAATTCCTCGATGAT 434
||||| ||||| |||||||||||||||||||||||||||
Sbjct 301 ATCACCAGTGTTATGGTCGCTGCTAAATTCCTCGATGAT 339
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37246089909
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5