BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44745.1
Length=871
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483604 jgi|Araly1|483604|fgenesh2_kg.4__2664__AT2G44745.1 1321 0.0
> Ahg483604 jgi|Araly1|483604|fgenesh2_kg.4__2664__AT2G44745.1
Length=875
Score = 1321 bits (715), Expect = 0.0
Identities = 830/882 (94%), Gaps = 22/882 (2%)
Strand=Plus/Plus
Query 1 AAACAATGGAAGGAGGAGGGAGAAGAGTATTCAGTAATTACGATCTACAACAAGTGACAT 60
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 AAACAATGGAAGGAGGAGGAAGAAGAGTATTCAATAATTACGATCTACAACAAGTGACAT 60
Query 61 CGTCGTCGACGACGATTCAAGAGAATATGAACTTCCTCGTTCCTTTTGAAGAAACCAATG 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGTCGTCGACGACGGTTCAAGAGAATATGAACTTCCTCGTTCCTTTTGAAGAAACCAATG 120
Query 121 TCTTAACctttttctcttcttcttcttcctcttctctttcttctccttctttccccattc 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 121 TCTTAACCTTTTTCTCTTCTTCTTCTTCCTCTTCTCTCTCTTCTCCTTCTTTCCCCATTC 180
Query 181 acaactcttcctccACTACTACTACTCATGCACCTCTAGGGTTTTCTAATAATCTTCAGG 240
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 181 ACAACTCTTCATCCACTACTACTACTCATGCACCTCTAGGGTTTTCTAACAATCTTCAGG 240
Query 241 GTGGAGGACCCTTGGGATCAAAGGTGGTTAATGATGATCAGGAGAATTTTGGAGGTGGAA 300
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 GTGGAGGACCCTTGGGATCAAAGGTGGTTAATGATGATCAGGAGAATTTTAGAGGTGGAA 300
Query 301 CTAACAATGATGCTCATTCTAATTCTTGGTGGAGATCAAATAGTGGAAGTGGAGATATGA 360
|||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 301 CTAACACTGATGCCCATTCTAATTCTTGGTGGAGATCAAATAGTGGGAGTGGAGATATGA 360
Query 361 AGAACAAAGTGAAGATAAGGAGGAAACTAAGAGAGCCAAGATTCTGTTTCCAAACCAAAA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 361 AGAACAAAGTGAAGATAAGGAGGAAACTAAGAGAGCCAAGATTCTGTTTCCAAACAAAAA 420
Query 421 GCGATGTTGATGTTCTTGACGATGGCTACAAATGGCGTAAATATGGTCAGAAAGTCGTCA 480
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GCGATGTCGATGTTCTTGACGATGGCTACAAATGGCGTAAATATGGTCAGAAAGTCGTCA 480
Query 481 AGAACAGCCTTCACCCCAGGAGTTATTACAGATGCACACACAACAACTGTAGGGTGAAAA 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 481 AGAACAGCCTTCACCCCAGGAGTTATTACAGATGCACACACAACAACTGTAGGGTGAAGA 540
Query 541 AGAGAGTGGAGCGACTATCGGAAGATTGTAGAATGGTGATTACTACTTACGAAGGTCGTC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AGAGAGTGGAGCGACTATCGGAAGATTGTAGAATGGTGATTACTACTTACGAAGGTCGTC 600
Query 601 ACAACCACATTCCCTCTGATGACTCCACTTCTCCTGACCATGATTGTCTCTCTTCCTTTT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ACAACCACATTCCCTCTGATGACTCCACTTCTCCTGACCATGATTGTCTCTCTTCCTTTT 660
Query 661 AACATCTCTTTCtatatatctatatatagacagttatat--gtgcacatatagatgtgtg 718
||| ||||||||| |||||||||||||| |||| ||||| ||||| |||||||||||||
Sbjct 661 AACCTCTCTTTCTGTATATCTATATATATACAGATATATCTGTGCATATATAGATGTGTG 720
Query 719 atatattgcat--atttgatatTGC-ATGTGTTTTTCAAGAGTATGTCATCAGATGTTAT 775
||||||||||| || || | || | | | || | ||| | | |||||||||||||||
Sbjct 721 ATATATTGCATGCATGTGTTTTT-CTA-GAGTATGTCAT-A--A-GTCATCAGATGTTAT 774
Query 776 GCATATATTCTTGACTTGTT-GCTTA--TA------GTATACATATGTAATAATATATAT 826
|||||| ||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct 775 GCATATCTTCTTGACTTGTTTGCTTACATATATATAGTATACATATGTAATAATATATAT 834
Query 827 TGACATTGGTAGTTCATTTCTGT-TCAAACTTTCAATGCGTT 867
|||||||||| |||||||| || | ||| ||||||||||||
Sbjct 835 TGACATTGGTTGTTCATTT-TGGATAAAATTTTCAATGCGTT 875
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32251987782
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5