BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44760.1
Length=1613
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483605 jgi|Araly1|483605|fgenesh2_kg.4__2665__AT2G44760.1 2497 0.0
> Ahg483605 jgi|Araly1|483605|fgenesh2_kg.4__2665__AT2G44760.1
Length=1588
Score = 2497 bits (1352), Expect = 0.0
Identities = 1514/1589 (95%), Gaps = 23/1589 (1%)
Strand=Plus/Plus
Query 40 ACGATGCAATCACCATTTCTTCATCTCTGTAAAAGCTTCACTTCTTCTTCTCCACTTTCA 99
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACGATGCAAACGCCATTTCTTCATCTCTGTAAAAGCTTCACTTCTTCTTCTCCACTTTCA 60
Query 100 TGTCACAACCACAATATATGCTTTGGATTTCATAATGCTCTGTTATCTCCTTCAATCTGC 159
||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGTAACAACCACAGTCTATGCTTTGGATTTCATAATGCTCTGTTATCTCCTTCAATCTGC 120
Query 160 AATTTCCAGCGACGAAACAATGTCAACGGGAGAAAAATCGTTGCGCAGGGATCAAGACTA 219
||||||| ||||||||||||||||||| |||| |||||||| ||||||||||||| || |
Sbjct 121 AATTTCCGGCGACGAAACAATGTCAACAGGAGGAAAATCGTGGCGCAGGGATCAAAACCA 180
Query 220 AACGACGGAAATAGCCGTCCGGCGGGAAACAAAGGGAAAGTAAGTCTGAAAGGTAACAAA 279
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 181 AACGACGGAAATAGCCGTCCGGCGGGAAACAAAGGGAAAGTGACTCTGAAAGGTAACAAA 240
Query 280 GAGAATATATGGAGCGTTGACAACGAAATGGCGGAGAAGGATAAGCGTAAGGTGAAGCCA 339
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 241 GAGAATATATGGAGCGTTGATAACGAAATGGCGGAGAAGGAGAAGCGTAAGGTGAAGCCA 300
Query 340 AA---AGGAAGAAAAAGCGGGAAGAGATTAGGTGGAGGAAGAAAGGGTAAATTCGGTAGA 396
|| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 301 AAGGGAGGAAGAAGAAGCGGGAAGAGATTAGGTGGAGGAAGAAAGGGTAAAATCGGTAGA 360
Query 397 GTTTTGGTTTCAGGGACGATGTTGATCGAATCCGAGACTGTTCTTCAAACTCAGGAGCCT 456
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 361 GTTTTGGTTTCTGGGACGATGTTGATCGAATCCGAGACTGTTCTTCAAACTCAGGAACCT 420
Query 457 GTGATAAAACCAGTTTGGAGAACATTTGCGAGTAGTGTAAGTGGGATTTGGAAAGGTGTA 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTGATAAAACCAGTTTGGAGAACATTTGCGAGTAGTGTAAGTGGGATTTGGAAAGGTGTA 480
Query 517 GGAGCTGTGTTCTCGCCGATTACTGGAGAGATGGAACCGATTGAAATTGGGAAGAAGAAT 576
|||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||
Sbjct 481 GGAGCTGTGTTCTCGCCGATAACTGCAGAGATGGAGCCGATTGAAATTGGGAAGAAGAAT 540
Query 577 GAGAGTCTTTATGATTGTTATACTCTTTCTAAGATTGAAGCGTTACCA--T-CTCCTTCT 633
||||||||||||||||||||||||||||||| ||| |||||||||||| | ||||||||
Sbjct 541 GAGAGTCTTTATGATTGTTATACTCTTTCTAGGATCGAAGCGTTACCATCTCCTCCTTCT 600
Query 634 AGTGGAGCTAATACAGAGTCTGAGATACAGAGGAAGATCAATTGGGTTACTTTAAATCCT 693
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 601 CGTGGAGCTAATACAGAGTCTGAGATACAGAGGAAGATCAATTGGGTTACTTTGAATCCT 660
Query 694 CATGGAGAG----T-----GTTCTGAGAGTAAAGATGAGGTTTTTGTTGATCAGAGTGGT 744
||||||||| | ||||||||||||||||||| |||| |||||||||| ||||
Sbjct 661 CATGGAGAGTTTTTCCAAATTTCTGAGAGTAAAGATGAGATTTTGGTTGATCAGACTGGT 720
Query 745 GTAGATAGTCGTTTGCCTAAGTTTGAGTCTTTTAACTTGAAAGCAAGTGATGTCATGGAA 804
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 721 GTAGATACTCGTTTGCCTAAGTTCGAGTCTTTTAACTTGAAAGCAAGTGATGTCATGGAA 780
Query 805 GAGGATTCCATGGTAGATGC-ACCCGGCCTCGTTTACTTCGAGGATGGATCGTATTCCAG 863
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 781 GAGGATTCCATGGTAGAT-CAACCCGGCCTCGTTTACTTCGAGGATGGATCGTATTCCAG 839
Query 864 AGGTCCAGTTACAATCCCTGTTGGGGAGATGAGTGAATCCAACTATTACCTCACACCGAC 923
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 840 AGGTCCAGTTACAATCCCTGTTGGGGAGATGAGTGAATCGAACTATTACCTCACACCGAC 899
Query 924 TTTCAAGTTTGAACAGTGTCTGGTGAAGGGTTGCCATAAGAGACTGAGAGTAGTTCACAC 983
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 900 TTTCAAGTTTGAACAGTGTCTGGTGAAGGGTTGCCATAAGAGACTGAGAGTAGTCCACAC 959
Query 984 TATAGAATTCGCCAATGGTGGTGCAGATATACAGATAATGAGAGTTGGTGTTTATGAAGA 1043
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 960 TATAGAGTTCGCCAATGGTGGTGTAGATATACAGATAATGAGAGTTGGTGTTTATGAAGA 1019
Query 1044 ACTGTGGGTTAGTCCTTCAAATTATGAAGAGCAAAGTGACAACGACGCACCATTGGAGTT 1103
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 ACAGTGGGTTAGTCCTTCAAATTATGAAGAGCAAAGTGACAACGACGCACCATTGGAGTT 1079
Query 1104 AAAACCATTCTCACAGAGGAAACGCACGCAACCATCAGAACTAACAGGATCATGGAAAGT 1163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 AAAACCATTCTCACAGAGGAAACGCACGCAACCATCAGAACTAACAGGATCATGGAAAGT 1139
Query 1164 ATTTGAAGTAAATGCAACTCCACTCTACGGAGAAGAAGCCGAATTCGAACAGCCAGGTGA 1223
||||||||||| |||||||||| |||| |||||||||||||||||||| |||||||||||
Sbjct 1140 ATTTGAAGTAAGTGCAACTCCAATCTATGGAGAAGAAGCCGAATTCGAGCAGCCAGGTGA 1199
Query 1224 AAGCACTCCAGTTGTGTACCTCTGCACAGAAGCTCTAAAGAGAAGGAACTTACCGGAAAC 1283
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1200 AAGCACTCCAGTTGTGTACCTGTGCACAGAAGCTCTAAAGAGAAGGAACTTACCGGAAAC 1259
Query 1284 TTTGGTTTCGTTTGGGGAGGAAGAGATGATAGATATGCAAGATGTGTCTGTGATGTGGCT 1343
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 TTTGGTTTCGTTTGGAGAGGAAGAGATGATAGATATGCAAGATGTGTCTGTGATGTGGCT 1319
Query 1344 ACCAGGTGGTGTGAGTGCATACGTGGATGTGAAGAAAGATGGAGTGTTGTGCATTGGAGT 1403
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 ACCAGGTGGTGTGACTGCATACGTGGATGTGAAGAAAGATGGAGTGTTGTGCATTGGAGT 1379
Query 1404 TGGATGGTATTCAGATGAAGGAATCAATCTTGTGATGGAGAGAGATTATGGTTTGGATGG 1463
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1380 TGGATGGTATTCAGATGAAGGAATCAATCTTGTGATGGAGAGGGATTATGGTTTGGATGG 1439
Query 1464 GAATCTTAAAGAAGTTCGATCCAAATCCGAAATGAAGAGACGATGGACAGAAGAACCCAA 1523
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1440 GAATCTTAAAGAAGTTAGATCAAAATCCGAAATGAAGAGACGATGGACAGAAGAACCCAA 1499
Query 1524 GTAAAACTCCTCTGTTTTAGATTTGATACT-A-TCTA-G-TACAAATGTAGTAACAC--T 1577
|||||||| | |||||||||||||||| | | ||| | ||||||||||||||||| |
Sbjct 1500 GTAAAACTTGTTTGTTTTAGATTTGATAATTACTCTTTGGTACAAATGTAGTAACACACT 1559
Query 1578 AGCTGATGTTTGGTAAGGCAATAAATTGT 1606
|||||||||||||||||||||||||||||
Sbjct 1560 AGCTGATGTTTGGTAAGGCAATAAATTGT 1588
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60449218815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5