BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G44770.1 Length=1607 Score E Sequences producing significant alignments: (Bits) Value Ahg497408 jgi|Araly1|497408|fgenesh2_kg.364__1__AT2G44770.1 1507 0.0 Ahg483606 jgi|Araly1|483606|fgenesh2_kg.4__2666__AT2G44770.1 1496 0.0 > Ahg497408 jgi|Araly1|497408|fgenesh2_kg.364__1__AT2G44770.1 Length=1452 Score = 1507 bits (816), Expect = 0.0 Identities = 924/974 (95%), Gaps = 16/974 (2%) Strand=Plus/Plus Query 206 ATTCGAAGTTGATCGCTATTTGATTCGATTGGTTT-TGAGTT--TTCGATCCTCGACGGA 262 ||||||||||||||||| |||| |||||||||||| | | || |||||| | | | || Sbjct 130 ATTCGAAGTTGATCGCTCTTTGGTTCGATTGGTTTCTTA-TTGATTCGAT--T-G-CTGA 184 Query 263 TGGAGATT-T-T-GAAGTGAATCGGAGGAGCGA-ATAAGAGAAAGT-GAGAGATGGATGA 317 || || || | | | || || || |||||| | |||||||| | ||||||||||||| Sbjct 185 TGAAG-TTATCTGGTTTTGCATTTGA-GAGCGAGAAAAGAGAAA-TCGAGAGATGGATGA 241 Query 318 TAGAGAAGGCTCGTTCGTAGCTGTTAGGCGGATTTCTCAGGGTCTCGAACGAGGAAGCGT 377 |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 242 TAGAGAAGGCTCGTTCGTAGCTGTCAGGCGGATTTCTCAGGGTCTCGAACGAGGGAGCGT 301 Query 378 TTACAATTCATCATCTGCTGAGGCTGTGCCTGGATCAGCAGCTTGGTTAGGCCGAGGTCT 437 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 302 TTACAATTCATCATCTGCTGAGGCTGTGCCTGGATCAGCAGCTTGGTTAGGCCGGGGTCT 361 Query 438 TTCTTGTGTTTGTGCTCAGAGAAGAGATAGTGACGCAAATTCTACGTTTGATCTAACACC 497 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 362 TTCTTGTGTTTGTGCTCAGAGAAGAGATAGTGACGCAAATTCTACGTTTGATCTAACACC 421 Query 498 TGCTCAGGAGGAATGCTTGCAGAGTTTGCAGAACCGCATTGACGTAGCTTATGATAGCAC 557 |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 422 TGCTCAGGAGGAATCCTTGCAGAACTTGCAGAACCGCATTGACGTAGCTTATGATAGCAC 481 Query 558 AATACCCTTGCATCAGGAAGCTCTAAGGGAGCTGTGGAAACTTTCCTTTCCTGAAGAAGA 617 ||||||||||||||||||||| || ||||| |||||||||||| |||||||||||||||| Sbjct 482 AATACCCTTGCATCAGGAAGCGCTGAGGGATCTGTGGAAACTTGCCTTTCCTGAAGAAGA 541 Query 618 GCTTCATGGATTAATATCTGAGCAGTGGAAAGAGATGGGTTGGCAGGGCAAAGATCCGTC 677 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 542 GCTTCATGGATTAATATCTGAGCAGTGGAAAGAGATGGGTTGGCAGGGCAAAGATCCGTC 601 Query 678 AACAGATTTTAGGGGTGGTGGTTTCATATCTCTTGAAAACTTGCTGTACTTTGCCAGGAA 737 |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| Sbjct 602 AACAGATTTTAGGGGTGGTGGTCTCATATCTCTTGAAAACTTGCTGTACTTTGCTAGGAA 661 Query 738 CTTTCAGAAATCCTTCCAGGACCTTCTGAGGAAACAGGTTGGGGATCGGTCTGTGTGGGA 797 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 662 CTTTCAGAAATCCTTCCAGGACCTTCTGAGGAAACAGGTTGGGGATCGGTCTGTGTGGGA 721 Query 798 ATACCCCTTTGCTGTCGCTGGTATCAACTTAACATTCATGCTCATCCAAATGCTTGACCT 857 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 722 ATACCCCTTTGCTGTTGCTGGTATCAACTTAACATTCATGCTCATCCAAATGCTTGACCT 781 Query 858 TGAAGCAGTGAAACCGCGAACAATTGTTGGGGCAACTTTTCTGAAATTTCTTTCTGAGAA 917 ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 782 TGAAGCAGTGAAACCACGAACAATTGTTGGGGCAACTTTTCTGAAGTTTCTTTCTGAGAA 841 Query 918 CGAATCTGCATTTGACCTTCTTTATTGCATTGCATTCAAGCTAATGGATCAGCAATGGCT 977 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 842 CGAATCTGCATTTGACCTTCTTTATTGCATTGCATTCAAGCTAATGGATCAGCAATGGCT 901 Query 978 TTCAATGCGTGCCTCATACATGGAGTTTAACACGGTGATGAAATCAACAAGGAGACAGCT 1037 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 902 TTCAATGCGCGCCTCATACATGGAGTTTAACACGGTGATGAAATCAACAAGGAGACAGTT 961 Query 1038 GGAGAGAGAGCTGATGCTGGAAGACATAATGCATCTTGAGGACTTACCCTCCTACGCTCT 1097 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 962 GGAGAGAGAGCTGATGCTGGAAGACATAATGCATCTTGAGGACTTACCCTCCTACGCTCT 1021 Query 1098 TCTCAATCAATAGCCCTTATGATGATATTAAATAGTAAGAAGAGTTTCTAACCTCAGGAT 1157 ||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||| || Sbjct 1022 TCTCAATCAATAGCCCTTACGATAATAATAAATAGTAAGAAGAGTTTCTAACCTCAGAAT 1081 Query 1158 AACACAAGGTTGCT 1171 ||||||||| |||| Sbjct 1082 AACACAAGGCTGCT 1095 Score = 387 bits (209), Expect = 2e-106 Identities = 320/369 (87%), Gaps = 26/369 (7%) Strand=Plus/Plus Query 1223 CTTCGTTGACCTTTTCTTGTGTTTGGTGG------TTCTAAGAAACAACTTCAACACCGA 1276 |||| |||||||||||||||||||||||| ||||||| ||||||| ||| ||||| Sbjct 1094 CTTCTTTGACCTTTTCTTGTGTTTGGTGGTTCTACTTCTAAGTAACAACTCCAAAACCGA 1153 Query 1277 GTTGTTACTTGTTATATTAAAACAAGAAAAAGAGTGTGAGAGAGACGGGGAGAGGTTGGG 1336 ||||||||||||||||||||||||||||| ||||||||| ||||| | ||||||||||| Sbjct 1154 GTTGTTACTTGTTATATTAAAACAAGAAATAGAGTGTGAAAGAGA--GAGAGAGGTTGGG 1211 Query 1337 ATAAATCTCAA-----TTTGGTTGC-AAGGAGTGTGTAGCTAAAATGGAATTGTTTTCTA 1390 ||||||||||| ||||||||| || |||||||||||| |||||| |||||||||| Sbjct 1212 ATAAATCTCAATTTGGTTTGGTTGCAAATGAGTGTGTAGCTGAAATGGGTTTGTTTTCTA 1271 Query 1391 ACAACGTTCAGGTTTTTTAGTTACTGTGTGGGTGATTGATCTTATTGTGT-GGGGATAAT 1449 |||||||| ||||||||||||||||||||| ||||||||| ||| ||||| ||||||||| Sbjct 1272 ACAACGTTGAGGTTTTTTAGTTACTGTGTGAGTGATTGATGTTAGTGTGTGGGGGATAAT 1331 Query 1450 AATCATTTGGTGATGTCCACAAGTTCAAAAGCAGTCTCTGTTAAA-GACTC-T-ACACGA 1506 ||| |||||||||||||||||| ||||||||||||| |||||||| ||||| | ||| | Sbjct 1332 AATGATTTGGTGATGTCCACAAATTCAAAAGCAGTCACTGTTAAAGGACTCTTAACA-GG 1390 Query 1507 GGTTAAAACTTCATTTGTTTGTGTATTaaaaaaaaGAAGTTACTTTGATTGTTTATAGCT 1566 ||||||||||||||||||||||||||||||| | ||| || |||||||||| ||| Sbjct 1391 GGTTAAAACTTCATTTGTTTGTGTATTAAAA----GTTGTT--TT-GATTGTTTATTGCT 1443 Query 1567 GTGAAAATT 1575 ||||| ||| Sbjct 1444 GTGAATATT 1452 > Ahg483606 jgi|Araly1|483606|fgenesh2_kg.4__2666__AT2G44770.1 Length=1450 Score = 1496 bits (810), Expect = 0.0 Identities = 922/974 (95%), Gaps = 16/974 (2%) Strand=Plus/Plus Query 206 ATTCGAAGTTGATCGCTATTTGATTCGATTGGTTT-TGAGTT--TTCGATCCTCGACGGA 262 ||||||||||||||||| |||| |||||||||||| | | || |||||| | | | || Sbjct 130 ATTCGAAGTTGATCGCTCTTTGGTTCGATTGGTTTCTTA-TTGATTCGAT--T-G-CTGA 184 Query 263 TGGAGATT-T-T-GAAGTGAATCGGAGGAGCGA-ATAAGAGAAAGT-GAGAGATGGATGA 317 || || || | | | || || || |||||| | |||||||| | ||||||||||||| Sbjct 185 TGAAG-TTATCTGGTTTTGCATTTGA-GAGCGAGAAAAGAGAAA-TCGAGAGATGGATGA 241 Query 318 TAGAGAAGGCTCGTTCGTAGCTGTTAGGCGGATTTCTCAGGGTCTCGAACGAGGAAGCGT 377 |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 242 TAGAGAAGGCTCGTTCGTAGCTGTCAGGCGGATTTCTCAGGGTCTCGAACGAGGGAGCGT 301 Query 378 TTACAATTCATCATCTGCTGAGGCTGTGCCTGGATCAGCAGCTTGGTTAGGCCGAGGTCT 437 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 302 TTACAATTCATCATCTGCTGAGGCTGTGCCTGGATCAGCAGCTTGGTTAGGCCGGGGTCT 361 Query 438 TTCTTGTGTTTGTGCTCAGAGAAGAGATAGTGACGCAAATTCTACGTTTGATCTAACACC 497 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 362 TTCTTGTGTTTGTGCTCAGAGAAGAGATAGTGACGCAAATTCTACGTTTGATCTAACACC 421 Query 498 TGCTCAGGAGGAATGCTTGCAGAGTTTGCAGAACCGCATTGACGTAGCTTATGATAGCAC 557 |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 422 TGCTCAGGAGGAATCCTTGCAGAACTTGCAGAACCGCATTGACGTAGCTTATGATAGCAC 481 Query 558 AATACCCTTGCATCAGGAAGCTCTAAGGGAGCTGTGGAAACTTTCCTTTCCTGAAGAAGA 617 ||||||||||||||||||||| || ||||| |||||||||||| |||||||||||||||| Sbjct 482 AATACCCTTGCATCAGGAAGCGCTGAGGGATCTGTGGAAACTTGCCTTTCCTGAAGAAGA 541 Query 618 GCTTCATGGATTAATATCTGAGCAGTGGAAAGAGATGGGTTGGCAGGGCAAAGATCCGTC 677 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 542 GCTTCATGGATTAATATCTGAGCAGTGGAAAGAGATGGGTTGGCAGGGCAAAGATCCGTC 601 Query 678 AACAGATTTTAGGGGTGGTGGTTTCATATCTCTTGAAAACTTGCTGTACTTTGCCAGGAA 737 |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| Sbjct 602 AACAGATTTTAGGGGTGGTGGTCTCATATCTCTTGAAAACTTGCTGTACTTTGCTAGGAA 661 Query 738 CTTTCAGAAATCCTTCCAGGACCTTCTGAGGAAACAGGTTGGGGATCGGTCTGTGTGGGA 797 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 662 CTTTCAGAAATCCTTCCAGGACCTTCTGAGGAAACAGGTTGGGGATCGGTCTGTGTGGGA 721 Query 798 ATACCCCTTTGCTGTCGCTGGTATCAACTTAACATTCATGCTCATCCAAATGCTTGACCT 857 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 722 ATACCCCTTTGCTGTTGCTGGTATCAACTTAACATTCATGCTCATCCAAATGCTTGACCT 781 Query 858 TGAAGCAGTGAAACCGCGAACAATTGTTGGGGCAACTTTTCTGAAATTTCTTTCTGAGAA 917 ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 782 TGAAGCAGTGAAACCACGAACAATTGTTGGGGCAACTTTTCTGAAGTTTCTTTCTGAGAA 841 Query 918 CGAATCTGCATTTGACCTTCTTTATTGCATTGCATTCAAGCTAATGGATCAGCAATGGCT 977 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 842 CGAATCTGCATTTGACCTTCTTTATTGCATTGCATTCAAGCTAATGGATCAGCAATGGCT 901 Query 978 TTCAATGCGTGCCTCATACATGGAGTTTAACACGGTGATGAAATCAACAAGGAGACAGCT 1037 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 902 TTCAATGCGCGCCTCATACATGGAGTTTAACACGGTGATGAAATCAACAAGGAGACAGTT 961 Query 1038 GGAGAGAGAGCTGATGCTGGAAGACATAATGCATCTTGAGGACTTACCCTCCTACGCTCT 1097 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 962 GGAGAGAGAGCTGATGCTGGAAGACATAATGCATCTTGAGGACTTACCCTCCTACGCTCT 1021 Query 1098 TCTCAATCAATAGCCCTTATGATGATATTAAATAGTAAGAAGAGTTTCTAACCTCAGGAT 1157 ||||||||||||||| ||| ||| ||| ||||||| ||||||||||||||||||||| || Sbjct 1022 TCTCAATCAATAGCCTTTACGATAATAATAAATAGCAAGAAGAGTTTCTAACCTCAGAAT 1081 Query 1158 AACACAAGGTTGCT 1171 ||||||||| |||| Sbjct 1082 AACACAAGGCTGCT 1095 Score = 379 bits (205), Expect = 3e-104 Identities = 319/369 (86%), Gaps = 28/369 (8%) Strand=Plus/Plus Query 1223 CTTCGTTGACCTTTTCTTGTGTTTGGTGG------TTCTAAGAAACAACTTCAACACCGA 1276 |||| |||||||||||||||||||||||| ||||||| ||||||| ||| ||||| Sbjct 1094 CTTCTTTGACCTTTTCTTGTGTTTGGTGGTTCTACTTCTAAGTAACAACTCCAAAACCGA 1153 Query 1277 GTTGTTACTTGTTATATTAAAACAAGAAAAAGAGTGTGAGAGAGACGGGGAGAGGTTGGG 1336 ||||||||||||||||||||||||||||| ||||||||| | ||| | ||||||||||| Sbjct 1154 GTTGTTACTTGTTATATTAAAACAAGAAATAGAGTGTGA-A-AGA--GAGAGAGGTTGGG 1209 Query 1337 ATAAATCTCAA-----TTTGGTTGC-AAGGAGTGTGTAGCTAAAATGGAATTGTTTTCTA 1390 ||||||||||| ||||||||| || |||||||||||| |||||| |||||||||| Sbjct 1210 ATAAATCTCAATTTGGTTTGGTTGCAAATGAGTGTGTAGCTGAAATGGGTTTGTTTTCTA 1269 Query 1391 ACAACGTTCAGGTTTTTTAGTTACTGTGTGGGTGATTGATCTTATTGTGT-GGGGATAAT 1449 |||||||| ||||||||||||||||||||| ||||||||| ||| ||||| ||||||||| Sbjct 1270 ACAACGTTGAGGTTTTTTAGTTACTGTGTGAGTGATTGATGTTAGTGTGTGGGGGATAAT 1329 Query 1450 AATCATTTGGTGATGTCCACAAGTTCAAAAGCAGTCTCTGTTAAA-GACTC-T-ACACGA 1506 ||| |||||||||||||||||| ||||||||||||| |||||||| ||||| | ||| | Sbjct 1330 AATGATTTGGTGATGTCCACAAATTCAAAAGCAGTCACTGTTAAAGGACTCTTAACA-GG 1388 Query 1507 GGTTAAAACTTCATTTGTTTGTGTATTaaaaaaaaGAAGTTACTTTGATTGTTTATAGCT 1566 ||||||||||||||||||||||||||||||| | ||| || |||||||||| ||| Sbjct 1389 GGTTAAAACTTCATTTGTTTGTGTATTAAAA----GTTGTT--TT-GATTGTTTATTGCT 1441 Query 1567 GTGAAAATT 1575 ||||| ||| Sbjct 1442 GTGAATATT 1450 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60220677345 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5