BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44770.1
Length=1607
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497408 jgi|Araly1|497408|fgenesh2_kg.364__1__AT2G44770.1 1507 0.0
Ahg483606 jgi|Araly1|483606|fgenesh2_kg.4__2666__AT2G44770.1 1496 0.0
> Ahg497408 jgi|Araly1|497408|fgenesh2_kg.364__1__AT2G44770.1
Length=1452
Score = 1507 bits (816), Expect = 0.0
Identities = 924/974 (95%), Gaps = 16/974 (2%)
Strand=Plus/Plus
Query 206 ATTCGAAGTTGATCGCTATTTGATTCGATTGGTTT-TGAGTT--TTCGATCCTCGACGGA 262
||||||||||||||||| |||| |||||||||||| | | || |||||| | | | ||
Sbjct 130 ATTCGAAGTTGATCGCTCTTTGGTTCGATTGGTTTCTTA-TTGATTCGAT--T-G-CTGA 184
Query 263 TGGAGATT-T-T-GAAGTGAATCGGAGGAGCGA-ATAAGAGAAAGT-GAGAGATGGATGA 317
|| || || | | | || || || |||||| | |||||||| | |||||||||||||
Sbjct 185 TGAAG-TTATCTGGTTTTGCATTTGA-GAGCGAGAAAAGAGAAA-TCGAGAGATGGATGA 241
Query 318 TAGAGAAGGCTCGTTCGTAGCTGTTAGGCGGATTTCTCAGGGTCTCGAACGAGGAAGCGT 377
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 242 TAGAGAAGGCTCGTTCGTAGCTGTCAGGCGGATTTCTCAGGGTCTCGAACGAGGGAGCGT 301
Query 378 TTACAATTCATCATCTGCTGAGGCTGTGCCTGGATCAGCAGCTTGGTTAGGCCGAGGTCT 437
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 302 TTACAATTCATCATCTGCTGAGGCTGTGCCTGGATCAGCAGCTTGGTTAGGCCGGGGTCT 361
Query 438 TTCTTGTGTTTGTGCTCAGAGAAGAGATAGTGACGCAAATTCTACGTTTGATCTAACACC 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 TTCTTGTGTTTGTGCTCAGAGAAGAGATAGTGACGCAAATTCTACGTTTGATCTAACACC 421
Query 498 TGCTCAGGAGGAATGCTTGCAGAGTTTGCAGAACCGCATTGACGTAGCTTATGATAGCAC 557
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 422 TGCTCAGGAGGAATCCTTGCAGAACTTGCAGAACCGCATTGACGTAGCTTATGATAGCAC 481
Query 558 AATACCCTTGCATCAGGAAGCTCTAAGGGAGCTGTGGAAACTTTCCTTTCCTGAAGAAGA 617
||||||||||||||||||||| || ||||| |||||||||||| ||||||||||||||||
Sbjct 482 AATACCCTTGCATCAGGAAGCGCTGAGGGATCTGTGGAAACTTGCCTTTCCTGAAGAAGA 541
Query 618 GCTTCATGGATTAATATCTGAGCAGTGGAAAGAGATGGGTTGGCAGGGCAAAGATCCGTC 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 GCTTCATGGATTAATATCTGAGCAGTGGAAAGAGATGGGTTGGCAGGGCAAAGATCCGTC 601
Query 678 AACAGATTTTAGGGGTGGTGGTTTCATATCTCTTGAAAACTTGCTGTACTTTGCCAGGAA 737
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 602 AACAGATTTTAGGGGTGGTGGTCTCATATCTCTTGAAAACTTGCTGTACTTTGCTAGGAA 661
Query 738 CTTTCAGAAATCCTTCCAGGACCTTCTGAGGAAACAGGTTGGGGATCGGTCTGTGTGGGA 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 CTTTCAGAAATCCTTCCAGGACCTTCTGAGGAAACAGGTTGGGGATCGGTCTGTGTGGGA 721
Query 798 ATACCCCTTTGCTGTCGCTGGTATCAACTTAACATTCATGCTCATCCAAATGCTTGACCT 857
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 ATACCCCTTTGCTGTTGCTGGTATCAACTTAACATTCATGCTCATCCAAATGCTTGACCT 781
Query 858 TGAAGCAGTGAAACCGCGAACAATTGTTGGGGCAACTTTTCTGAAATTTCTTTCTGAGAA 917
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 782 TGAAGCAGTGAAACCACGAACAATTGTTGGGGCAACTTTTCTGAAGTTTCTTTCTGAGAA 841
Query 918 CGAATCTGCATTTGACCTTCTTTATTGCATTGCATTCAAGCTAATGGATCAGCAATGGCT 977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 CGAATCTGCATTTGACCTTCTTTATTGCATTGCATTCAAGCTAATGGATCAGCAATGGCT 901
Query 978 TTCAATGCGTGCCTCATACATGGAGTTTAACACGGTGATGAAATCAACAAGGAGACAGCT 1037
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 902 TTCAATGCGCGCCTCATACATGGAGTTTAACACGGTGATGAAATCAACAAGGAGACAGTT 961
Query 1038 GGAGAGAGAGCTGATGCTGGAAGACATAATGCATCTTGAGGACTTACCCTCCTACGCTCT 1097
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 GGAGAGAGAGCTGATGCTGGAAGACATAATGCATCTTGAGGACTTACCCTCCTACGCTCT 1021
Query 1098 TCTCAATCAATAGCCCTTATGATGATATTAAATAGTAAGAAGAGTTTCTAACCTCAGGAT 1157
||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||| ||
Sbjct 1022 TCTCAATCAATAGCCCTTACGATAATAATAAATAGTAAGAAGAGTTTCTAACCTCAGAAT 1081
Query 1158 AACACAAGGTTGCT 1171
||||||||| ||||
Sbjct 1082 AACACAAGGCTGCT 1095
Score = 387 bits (209), Expect = 2e-106
Identities = 320/369 (87%), Gaps = 26/369 (7%)
Strand=Plus/Plus
Query 1223 CTTCGTTGACCTTTTCTTGTGTTTGGTGG------TTCTAAGAAACAACTTCAACACCGA 1276
|||| |||||||||||||||||||||||| ||||||| ||||||| ||| |||||
Sbjct 1094 CTTCTTTGACCTTTTCTTGTGTTTGGTGGTTCTACTTCTAAGTAACAACTCCAAAACCGA 1153
Query 1277 GTTGTTACTTGTTATATTAAAACAAGAAAAAGAGTGTGAGAGAGACGGGGAGAGGTTGGG 1336
||||||||||||||||||||||||||||| ||||||||| ||||| | |||||||||||
Sbjct 1154 GTTGTTACTTGTTATATTAAAACAAGAAATAGAGTGTGAAAGAGA--GAGAGAGGTTGGG 1211
Query 1337 ATAAATCTCAA-----TTTGGTTGC-AAGGAGTGTGTAGCTAAAATGGAATTGTTTTCTA 1390
||||||||||| ||||||||| || |||||||||||| |||||| ||||||||||
Sbjct 1212 ATAAATCTCAATTTGGTTTGGTTGCAAATGAGTGTGTAGCTGAAATGGGTTTGTTTTCTA 1271
Query 1391 ACAACGTTCAGGTTTTTTAGTTACTGTGTGGGTGATTGATCTTATTGTGT-GGGGATAAT 1449
|||||||| ||||||||||||||||||||| ||||||||| ||| ||||| |||||||||
Sbjct 1272 ACAACGTTGAGGTTTTTTAGTTACTGTGTGAGTGATTGATGTTAGTGTGTGGGGGATAAT 1331
Query 1450 AATCATTTGGTGATGTCCACAAGTTCAAAAGCAGTCTCTGTTAAA-GACTC-T-ACACGA 1506
||| |||||||||||||||||| ||||||||||||| |||||||| ||||| | ||| |
Sbjct 1332 AATGATTTGGTGATGTCCACAAATTCAAAAGCAGTCACTGTTAAAGGACTCTTAACA-GG 1390
Query 1507 GGTTAAAACTTCATTTGTTTGTGTATTaaaaaaaaGAAGTTACTTTGATTGTTTATAGCT 1566
||||||||||||||||||||||||||||||| | ||| || |||||||||| |||
Sbjct 1391 GGTTAAAACTTCATTTGTTTGTGTATTAAAA----GTTGTT--TT-GATTGTTTATTGCT 1443
Query 1567 GTGAAAATT 1575
||||| |||
Sbjct 1444 GTGAATATT 1452
> Ahg483606 jgi|Araly1|483606|fgenesh2_kg.4__2666__AT2G44770.1
Length=1450
Score = 1496 bits (810), Expect = 0.0
Identities = 922/974 (95%), Gaps = 16/974 (2%)
Strand=Plus/Plus
Query 206 ATTCGAAGTTGATCGCTATTTGATTCGATTGGTTT-TGAGTT--TTCGATCCTCGACGGA 262
||||||||||||||||| |||| |||||||||||| | | || |||||| | | | ||
Sbjct 130 ATTCGAAGTTGATCGCTCTTTGGTTCGATTGGTTTCTTA-TTGATTCGAT--T-G-CTGA 184
Query 263 TGGAGATT-T-T-GAAGTGAATCGGAGGAGCGA-ATAAGAGAAAGT-GAGAGATGGATGA 317
|| || || | | | || || || |||||| | |||||||| | |||||||||||||
Sbjct 185 TGAAG-TTATCTGGTTTTGCATTTGA-GAGCGAGAAAAGAGAAA-TCGAGAGATGGATGA 241
Query 318 TAGAGAAGGCTCGTTCGTAGCTGTTAGGCGGATTTCTCAGGGTCTCGAACGAGGAAGCGT 377
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 242 TAGAGAAGGCTCGTTCGTAGCTGTCAGGCGGATTTCTCAGGGTCTCGAACGAGGGAGCGT 301
Query 378 TTACAATTCATCATCTGCTGAGGCTGTGCCTGGATCAGCAGCTTGGTTAGGCCGAGGTCT 437
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 302 TTACAATTCATCATCTGCTGAGGCTGTGCCTGGATCAGCAGCTTGGTTAGGCCGGGGTCT 361
Query 438 TTCTTGTGTTTGTGCTCAGAGAAGAGATAGTGACGCAAATTCTACGTTTGATCTAACACC 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 TTCTTGTGTTTGTGCTCAGAGAAGAGATAGTGACGCAAATTCTACGTTTGATCTAACACC 421
Query 498 TGCTCAGGAGGAATGCTTGCAGAGTTTGCAGAACCGCATTGACGTAGCTTATGATAGCAC 557
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 422 TGCTCAGGAGGAATCCTTGCAGAACTTGCAGAACCGCATTGACGTAGCTTATGATAGCAC 481
Query 558 AATACCCTTGCATCAGGAAGCTCTAAGGGAGCTGTGGAAACTTTCCTTTCCTGAAGAAGA 617
||||||||||||||||||||| || ||||| |||||||||||| ||||||||||||||||
Sbjct 482 AATACCCTTGCATCAGGAAGCGCTGAGGGATCTGTGGAAACTTGCCTTTCCTGAAGAAGA 541
Query 618 GCTTCATGGATTAATATCTGAGCAGTGGAAAGAGATGGGTTGGCAGGGCAAAGATCCGTC 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 GCTTCATGGATTAATATCTGAGCAGTGGAAAGAGATGGGTTGGCAGGGCAAAGATCCGTC 601
Query 678 AACAGATTTTAGGGGTGGTGGTTTCATATCTCTTGAAAACTTGCTGTACTTTGCCAGGAA 737
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 602 AACAGATTTTAGGGGTGGTGGTCTCATATCTCTTGAAAACTTGCTGTACTTTGCTAGGAA 661
Query 738 CTTTCAGAAATCCTTCCAGGACCTTCTGAGGAAACAGGTTGGGGATCGGTCTGTGTGGGA 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 CTTTCAGAAATCCTTCCAGGACCTTCTGAGGAAACAGGTTGGGGATCGGTCTGTGTGGGA 721
Query 798 ATACCCCTTTGCTGTCGCTGGTATCAACTTAACATTCATGCTCATCCAAATGCTTGACCT 857
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 ATACCCCTTTGCTGTTGCTGGTATCAACTTAACATTCATGCTCATCCAAATGCTTGACCT 781
Query 858 TGAAGCAGTGAAACCGCGAACAATTGTTGGGGCAACTTTTCTGAAATTTCTTTCTGAGAA 917
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 782 TGAAGCAGTGAAACCACGAACAATTGTTGGGGCAACTTTTCTGAAGTTTCTTTCTGAGAA 841
Query 918 CGAATCTGCATTTGACCTTCTTTATTGCATTGCATTCAAGCTAATGGATCAGCAATGGCT 977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 CGAATCTGCATTTGACCTTCTTTATTGCATTGCATTCAAGCTAATGGATCAGCAATGGCT 901
Query 978 TTCAATGCGTGCCTCATACATGGAGTTTAACACGGTGATGAAATCAACAAGGAGACAGCT 1037
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 902 TTCAATGCGCGCCTCATACATGGAGTTTAACACGGTGATGAAATCAACAAGGAGACAGTT 961
Query 1038 GGAGAGAGAGCTGATGCTGGAAGACATAATGCATCTTGAGGACTTACCCTCCTACGCTCT 1097
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 GGAGAGAGAGCTGATGCTGGAAGACATAATGCATCTTGAGGACTTACCCTCCTACGCTCT 1021
Query 1098 TCTCAATCAATAGCCCTTATGATGATATTAAATAGTAAGAAGAGTTTCTAACCTCAGGAT 1157
||||||||||||||| ||| ||| ||| ||||||| ||||||||||||||||||||| ||
Sbjct 1022 TCTCAATCAATAGCCTTTACGATAATAATAAATAGCAAGAAGAGTTTCTAACCTCAGAAT 1081
Query 1158 AACACAAGGTTGCT 1171
||||||||| ||||
Sbjct 1082 AACACAAGGCTGCT 1095
Score = 379 bits (205), Expect = 3e-104
Identities = 319/369 (86%), Gaps = 28/369 (8%)
Strand=Plus/Plus
Query 1223 CTTCGTTGACCTTTTCTTGTGTTTGGTGG------TTCTAAGAAACAACTTCAACACCGA 1276
|||| |||||||||||||||||||||||| ||||||| ||||||| ||| |||||
Sbjct 1094 CTTCTTTGACCTTTTCTTGTGTTTGGTGGTTCTACTTCTAAGTAACAACTCCAAAACCGA 1153
Query 1277 GTTGTTACTTGTTATATTAAAACAAGAAAAAGAGTGTGAGAGAGACGGGGAGAGGTTGGG 1336
||||||||||||||||||||||||||||| ||||||||| | ||| | |||||||||||
Sbjct 1154 GTTGTTACTTGTTATATTAAAACAAGAAATAGAGTGTGA-A-AGA--GAGAGAGGTTGGG 1209
Query 1337 ATAAATCTCAA-----TTTGGTTGC-AAGGAGTGTGTAGCTAAAATGGAATTGTTTTCTA 1390
||||||||||| ||||||||| || |||||||||||| |||||| ||||||||||
Sbjct 1210 ATAAATCTCAATTTGGTTTGGTTGCAAATGAGTGTGTAGCTGAAATGGGTTTGTTTTCTA 1269
Query 1391 ACAACGTTCAGGTTTTTTAGTTACTGTGTGGGTGATTGATCTTATTGTGT-GGGGATAAT 1449
|||||||| ||||||||||||||||||||| ||||||||| ||| ||||| |||||||||
Sbjct 1270 ACAACGTTGAGGTTTTTTAGTTACTGTGTGAGTGATTGATGTTAGTGTGTGGGGGATAAT 1329
Query 1450 AATCATTTGGTGATGTCCACAAGTTCAAAAGCAGTCTCTGTTAAA-GACTC-T-ACACGA 1506
||| |||||||||||||||||| ||||||||||||| |||||||| ||||| | ||| |
Sbjct 1330 AATGATTTGGTGATGTCCACAAATTCAAAAGCAGTCACTGTTAAAGGACTCTTAACA-GG 1388
Query 1507 GGTTAAAACTTCATTTGTTTGTGTATTaaaaaaaaGAAGTTACTTTGATTGTTTATAGCT 1566
||||||||||||||||||||||||||||||| | ||| || |||||||||| |||
Sbjct 1389 GGTTAAAACTTCATTTGTTTGTGTATTAAAA----GTTGTT--TT-GATTGTTTATTGCT 1441
Query 1567 GTGAAAATT 1575
||||| |||
Sbjct 1442 GTGAATATT 1450
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60220677345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5