BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44790.1
Length=962
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483607 jgi|Araly1|483607|fgenesh2_kg.4__2667__AT2G44790.1 531 5e-150
Ahg952086 jgi|Araly1|952086|scaffold_36400003.1 416 1e-115
> Ahg483607 jgi|Araly1|483607|fgenesh2_kg.4__2667__AT2G44790.1
Length=827
Score = 531 bits (287), Expect = 5e-150
Identities = 349/377 (93%), Gaps = 12/377 (3%)
Strand=Plus/Plus
Query 469 CTCCGGCCACTCCCACGCCACCTTCTTCAACTCCGGGAACTCCTACCACACCGGAATCAC 528
|||||| |||||||||||||| ||| |||||||||||||||||||||||||||| ||||
Sbjct 426 CTCCGGGAACTCCCACGCCACCGTCTACAACTCCGGGAACTCCTACCACACCGGACTCAC 485
Query 529 CTCCGTCTGGCGGATcacccacacccaccacacccacaccTGGTGCAGGTTCAACTTCTC 588
||||| ||||||||| ||||||||||||||||||||| | |||| ||||| | |
Sbjct 486 CTCCGGCTGGCGGAT------CACCCACCACACCCACACCTGATTCAGGGTCAAC-T-T- 536
Query 589 CTCCTCCTCCACCAAAGGCAAGTGGTGCGTCTAAGGGAGTGATGAGTTACGTTTTGGTGG 648
||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
Sbjct 537 CTCCTCCTCCACCAAAGCCAAGTGGTGCGTCAAAGGGAGTGATGAGTTACGTTTTGGTCG 596
Query 649 GAGTCTCGATGGTTTTGGGTTATGGTTTGTGGATGTAATTGGTTTAGAGAGCCAGGGTGG 708
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 597 GAGTCTCGATGGTTTTGGGTTATGGTTTGTGGATGTAATTGGTTTAGTGAGCCAGGGTGG 656
Query 709 AGTCAGTGCTTTTGCCTTTTTAAATTATTTTGGTTTTTGGTTGTAAGAGAATTTGGGTTT 768
||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||| |
Sbjct 657 AGTCAGTGCTTTTGC-TTTTTAAATTATTTTGGTCTTTGGTTGTAAGAGAAGTTGGGTAT 715
Query 769 GTGTGCCACGTCAGAAGCTCTTCATTATTCGTAGGATTTTTATTATCTCGGCATTTGATT 828
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 716 GTGTGCCACGTCAGAAGCTCTTCATTATTCGTAGGATTTT-ATTAT-TCGGCATTTGATT 773
Query 829 ATCGTTATCATCATCAT 845
|||||||||||||||||
Sbjct 774 ATCGTTATCATCATCAT 790
Score = 379 bits (205), Expect = 2e-104
Identities = 314/362 (87%), Gaps = 26/362 (7%)
Strand=Plus/Plus
Query 1 GTTATATAATGACACCATAACCATTTCTTCTCTTCACAATCTTTAC---AAGAATATCTC 57
||||||||||||||||||||||||||||||||| ||||| ||| || || ||||||||
Sbjct 1 GTTATATAATGACACCATAACCATTTCTTCTCTGCACAACCTTAACAATAATAATATCTC 60
Query 58 TCTTCTACAGTAAACAAAAAATGGCAATGAATGGTTTGTCCAAGATGGCTGTAGCCGCCG 117
||||||| ||| | |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 61 TCTTCTA-AGT--A-AAAAAATGGCAATGAATGGTTTGTCCAAGATGGCTGCAGCCGCCG 116
Query 118 CAACTGCTCTTCTCCTAGTTCTGACCATTGTCCCGGGCGCAGTAGCTGTGACTTACACTA 177
||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||
Sbjct 117 CAACTGCTCTTCTCCTAGTCCTGACCATTGTCCCGGCCACAGTAGCTGTGACTTACACGG 176
Query 178 TTG-A-ATGGAC--CA------C--TGGTGTGGACTACTCAGGTTGGGCTACCGGAAAGA 225
| | | | || | || | ||||||||||||| ||| ||||| | |||||||||
Sbjct 177 TGGGAGACGGTCAACAATGGGACAGTGGTGTGGACTACACAGTTTGGGTTGCCGGAAAGA 236
Query 226 CTTTCAGGGTTGGTGACATTCTAGA-----GTTCAAGTATGGTTCT-TCCCACACGGTGG 279
||||||||||||||||| ||||||| ||||||||||||| | || ||| ||||||
Sbjct 237 CTTTCAGGGTTGGTGACGTTCTAGAAACAAGTTCAAGTATGGT-CGATCACACTCGGTGG 295
Query 280 ATGTGGTTGACAAAGCCGGATATGATGGCTGCGACGCCTCCTCCTCGACTGAGAACCATT 339
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 296 ATGTGGTTGACAAAGCCGGATATGATGGCTGCGATGCCTCCTCCTCGACTGAGAACCATT 355
Query 340 CC 341
||
Sbjct 356 CC 357
Score = 99.0 bits (53), Expect = 6e-20
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 435 CTAGCCGTTAATGTCGTAGCCGGTTCTGCCGGACCTCCGGCCACTCCCACGCCACCTTCT 494
||||||| || |||| |||||| ||||||||||||||||||||||||||||| || ||
Sbjct 362 CTAGCCGCTACTGTCTTAGCCGCCTCTGCCGGACCTCCGGCCACTCCCACGCCCCCGTCA 421
Query 495 TCAACTCCGGGAACTCC 511
|||||||||||||||||
Sbjct 422 TCAACTCCGGGAACTCC 438
> Ahg952086 jgi|Araly1|952086|scaffold_36400003.1
Length=523
Score = 416 bits (225), Expect = 1e-115
Identities = 301/335 (90%), Gaps = 15/335 (4%)
Strand=Plus/Plus
Query 372 GTAGGAATAAACTATTTCATCTGTTCTACACCTGGTCACTGCAGAACCAATGGCGGCATG 431
||||||||||| |||||||||||| |||||||||||||||| | ||||| ||||||
Sbjct 204 GTAGGAATAAAGTATTTCATCTGTCCTACACCTGGTCACTG-TG--CCAAT---GGCATG 257
Query 432 AAGCTAGCCGTTAATGTCGTAGCCGGTTCTGCCGGACCTCCGGCCACTCCCACGCCACCT 491
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 258 AAGCTAGCCGTTACTGTCGTAGCCGCCTCTGCCGGACCTCCGGCCACTCCCACGCCCCCG 317
Query 492 TCTTCAACTCCGGGAACTCCTACCACACCGGAATCACCTCCGTCTGGCGGATcacccaca 551
||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 318 TCTACAACTCCGGGAACTCCTACCACACCGGACTCACCTCCGGCTGGCGGATCACCCAC- 376
Query 552 cccaccacacccacaccTGGTGCAGGTTCAACTTCTCCTCCTCCTCCACCAAAGGCAAGT 611
| || || || ||||||| | |||| ||||||||||||||||| ||||||| |||||
Sbjct 377 C--AC-AC-CC-ACACCTGATTCAGGGTCAACTTCTCCTCCTCC---ACCAAAGCCAAGT 428
Query 612 GGTGCGTCTAAGGGAGTGATGAGTTACGTTTTGGTGGGAGTCTCGATGGTTTTGGGTTAT 671
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 429 GGTGCGTCAAAGGGAGTGATGAGTTACGTTTTGGTCGGAGTCTCGATGGTTTTGGGTTAT 488
Query 672 GGTTTGTGGATGTAATTGGTTTAGAGAGCCAGGGT 706
| |||||||||||||||||||||| ||||||||||
Sbjct 489 GCTTTGTGGATGTAATTGGTTTAGTGAGCCAGGGT 523
Score = 209 bits (113), Expect = 3e-53
Identities = 179/208 (86%), Gaps = 16/208 (8%)
Strand=Plus/Plus
Query 54 TCTCTCTTCTACAGTAAACAAAAAATGGCAATGAATGGTTTGTCCAAGATGGCTGTAGCC 113
||||||||||| ||| | |||||||||||||||||||||||||||||||||||| ||||
Sbjct 1 TCTCTCTTCTA-AGT--A-AAAAAATGGCAATGAATGGTTTGTCCAAGATGGCTGCAGCC 56
Query 114 GCCGCAACTGCTCTTCTCCTAGTTCTGACCATTGTCCCGGGCGCAGTAGCTGTGACTTAC 173
||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||
Sbjct 57 GCCGCAACTGCTCTTCTCCTAGTCCTGACCATTGTCCCGGCCACAGTAGCTGTGACTTAC 116
Query 174 ACTATTG-A-ATGGAC--CA------C--TGGTGTGGACTACTCAGGTTGGGCTACCGGA 221
|| | | | | || | || | ||||||||||||| ||| ||||| | |||||
Sbjct 117 ACGGTGGGAGACGGTCAACAATGGGACAGTGGTGTGGACTACACAGTTTGGGTTGCCGGA 176
Query 222 AAGACTTTCAGGGTTGGTGACATTCTAG 249
||||||||||||||||||||||||||||
Sbjct 177 AAGACTTTCAGGGTTGGTGACATTCTAG 204
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35721173229
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5