BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44800.1
Length=1258
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322141 jgi|Araly1|322141|fgenesh1_pm.C_scaffold_4002198 1720 0.0
Ahg324483 jgi|Araly1|324483|fgenesh1_pm.C_scaffold_5002027 1002 0.0
> Ahg322141 jgi|Araly1|322141|fgenesh1_pm.C_scaffold_4002198
Length=1074
Score = 1720 bits (931), Expect = 0.0
Identities = 1028/1075 (96%), Gaps = 6/1075 (1%)
Strand=Plus/Plus
Query 185 ATGGAGGAAAC-AAAAATGAGTTTGCTTGATGATTCTTTTACAAGTGCAATGACACTTAC 243
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGGAAACGAAAAA-GAGTTTGCTTGATGATTCTTTTACAAGTGCAATGACACTTAC 59
Query 244 CAATTCAGGTGTGCCTCAAGTCCCTGATCGCTACGTTCTTCCTCCTTCGCAAAGGCCAGC 303
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 60 CAATTCAGGTGTGCCTCAAGTCCCTGATCGTTACGTTCTTCCCCCTTCGCAAAGGCCAGC 119
Query 304 TCTTGGTTCAAGCTTAGGCACCAGC-GAGACTACACTTCCTGTCATTGATCTCTCTCTTT 362
||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||
Sbjct 120 TCTTGGTTCAAGCTTAGGCACCA-CTGAGACAACACTTCCTGTCATTGATCTCTCTCTTC 178
Query 363 TGCACCAACCTTTCCTTCGATCCCTCGCAATCCACGAGATTAGCATGGCCTGCAAGGAGT 422
| |||||||| | ||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 179 TAAACCAACCTCTGCTTAGATCCCGCGCAATCCACGAGATTAGCATGGCCTGCAAGGAGT 238
Query 423 TTGGTTTCTTTCAGGTTATAAACCATGGAATACCATCATCAGTGGTTAACGATGCCTTAG 482
|||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
Sbjct 239 TTGGTTTCTTTCAGGTTAGAAACCATGGAATACCATCATCAGTGGTTAAAGATGCCTTTG 298
Query 483 ATGCAGCAACACAGTTCTTCGACTTACCTGTGGAAGAGAAGATGCTTCTGGTGTCTGCAA 542
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 299 ATGCAGCAACACAGTTCTTTGACTTACCTGTGGAGGAGAAGATGCTTCTGGTGTCTGCAA 358
Query 543 ACGTTCATGAGCCAGTCAGGTATGGCACAAGCCTTAACCATTCAACAGACAGAGTTCACT 602
| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 359 ATGTTCATGAGCCAGTAAGGTATGGCACAAGCCTTAACCATTCCACAGACAGAGTTCACT 418
Query 603 ACTGGAGAGATTTCATCAAGCATTACTCTCATCCACTCTCAAAGTGGATCGATATGTGGC 662
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 419 ACTGGAGAGATTTCATCAAGCATTACTCTCATCCACTCTCAAAGTGGATCAATATGTGGC 478
Query 663 CATCAAATCCTCCATGCTACAAGGATAAAGTGGGCAAGTATGCAGAGGCAACACATTTGC 722
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 479 CATCAAATCCTCCATGCTACAAGGATAAAGTGGGCAAGTATGCAGAGGCAACACATGTGC 538
Query 723 TACACAAGCAGTTAATAGAAGCTATCTCAGAAAGCCTGGGACTGGAGAAAAATTACTTAC 782
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TACATAAGCAATTAATAGAAGCTATCTCAGAAAGCCTGGGACTGGAGAAAAATTACTTAC 598
Query 783 AAGAAGAGATAGAAGAAGGCTCACAAGTCATGGCAGTGAATTGTTATCCAGCATGCCCGG 842
|||||||||| |||| |||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 599 AAGAAGAGATTGAAGGAGGCTCACAAGTCATGGCAGTGAACTGTTATCCAGCATGTCCGG 658
Query 843 AACCTGAAATGGCCTTGGGAATGCCACCACACTCAGACTTCAGCTCACTGACCATCTTAC 902
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 AACCTGAAATCGCCTTGGGAATGCCACCACACTCAGACTTCAGCTCACTGACCATCTTAC 718
Query 903 TTCAGAGTAGCAAGGGACTCCAGATAATGGACTGCAACAAAAACTGGGTTTGTGTGCCGT 962
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TTCAAAGTAGCCAGGGACTCCAGATAATGGACTGCAACAAAAACTGGGTTTGTGTGCCGT 778
Query 963 ATATAGAAGGAGCTTTGATAGTTCAGCTGGGAGATCAGGTAGAGGTGATGAGCAACGGCA 1022
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 779 ATATCGAAGGAGCTTTGATAGTTCAGCTGGGAGATCAGGTAGAAGTGATGAGCAACGGCA 838
Query 1023 TATACAAGAGCGTCATTCATCGTGTAACAGTGAACAAAGAAGTCAAAAGGCTATCTTTTG 1082
|||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 839 TATACAAGAGTGTCATTCATCGTGTAACAGTGAACACAGATGTCAAAAGGCTATCTTTTG 898
Query 1083 CAAGTCTTCACAGTCTACCTCTGCACAAGAAAATAAGTCCAGCACCAAAACTCGTCAACC 1142
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 899 CAAGTCTTCACAGTCTACCTCTGCACAAGAAAATAAGTCCAGCACCGAAACTCGTCAACG 958
Query 1143 CAAACAATGCACCAGCCTATGGAGAGTTTAGTTTCAACGATTTTCT-GAACTACATCTCA 1201
|||||||| |||| ||||| |||||||||||||||||||||||||| || ||||||||||
Sbjct 959 CAAACAATACACCTGCCTACGGAGAGTTTAGTTTCAACGATTTTCTTGA-CTACATCTCA 1017
Query 1202 AGCAACGATTTTATACAAGAAAGATTCATTGACACAATAAAGAAAAGCAGTTCCT 1256
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1018 AGCAACGATTTTATACAAGAAAGATTCATTGATACAATAAAGAAGAGCAGTTCCT 1072
> Ahg324483 jgi|Araly1|324483|fgenesh1_pm.C_scaffold_5002027
Length=1086
Score = 1002 bits (542), Expect = 0.0
Identities = 911/1084 (84%), Gaps = 46/1084 (4%)
Strand=Plus/Plus
Query 185 ATGGAGGAAACAA-AAATGAGTTTGCTTGATGATT-CTTTTACAAGTGCAATGACACTTA 242
||||| ||||||| || |||| || ||||||||| | || || ||||| ||| ||||||
Sbjct 1 ATGGAAGAAACAATTAA-GAGTGTGGTTGATGATTGC-TTCACCAGTGCTATGGCACTTA 58
Query 243 CCAATTCAGGTGTGCC-TCAAGTCCCTGA-TCGCTACGTTCTTCCTCCTTCGCAAAGGCC 300
|| | |||||||| || ||| || ||| | ||| ||| ||||||| ||||| ||| | ||
Sbjct 59 CCGACTCAGGTGT-CCTTCATGTGCCT-ACTCGTTACATTCTTCCACCTTCACAACGACC 116
Query 301 -A-GCTCTTGGTTCAAGC-TTAGGCACCAGCGAGA-C-T-ACACTTCCTGTCATTGATCT 354
| |||| ||||||||| || || ||| || | | | || |||||||||||||||||
Sbjct 117 AATGCTC--GGTTCAAGCATT-GG---CAGTGACACCATCACGCTTCCTGTCATTGATCT 170
Query 355 CTCTCTTTTGCACCAACCTTTCCTTCGATCCCT-CG-CAATCCACGAGATTAG-CATGGC 411
||| || || ||| | ||||| ||| || | || | | ||||| |||||| | |||||
Sbjct 171 CTCCCTCTTACACGATCCTTTGCTTAGA-CGCTGTGTC-ATCCATGAGATT-GAAATGGC 227
Query 412 CTGCAA-GGAGTTTGGTTTCTTTCAGGTTATAAACCATGGAATACCATCATCAGTGGTTA 470
|||||| ||| ||||||||||||||| ||||||||||||||||| ||||||||||||| |
Sbjct 228 CTGCAAGGGA-TTTGGTTTCTTTCAGATTATAAACCATGGAATATCATCATCAGTGGTGA 286
Query 471 ACGATGC-CTTAGATGCAGCAACACA-GTTCTTCGACTTACCTGTGGAAGAGAAGATGCT 528
| ||||| | |||||||||| ||| | |||||| ||||||||||| || |||||||||||
Sbjct 287 AAGATGCGC-TAGATGCAGCTACA-AGGTTCTTTGACTTACCTGTTGATGAGAAGATGCT 344
Query 529 TCT-GGTGTCTGCA-AACGTTCATGA-GCCAGTCAGGTATGGCACAAGCCTT-AACCATT 584
||| ||| |||| | ||||||||| | ||||| ||||||||||| || ||| ||||| |
Sbjct 345 TCTGGGT-TCTG-ATAACGTTCAT-ACACCAGTAAGGTATGGCACCAG-CTTAAACCACT 400
Query 585 CAACAGACAGAGTTCACTACTGGAGAGATTTCATCAAGCATTACTCTCATCCACTCTCAA 644
||||||||| |||||| |||||||||||||||||||| |||||||| ||||| || ||||
Sbjct 401 CAACAGACAAAGTTCATTACTGGAGAGATTTCATCAAACATTACTCCCATCCTCTTTCAA 460
Query 645 AGTGGATCGATATGTGGCCATCAAATCCTCCATGCTACAAGGATAAAGTGGGCAAGTATG 704
||||||||||| |||||||||| || ||||||||||||||||| |||||||| || || |
Sbjct 461 AGTGGATCGATTTGTGGCCATCCAACCCTCCATGCTACAAGGAAAAAGTGGGGAAATACG 520
Query 705 CAGAGGCAACACATTTGCTACACAAGCAGTTAATAGAAGCTATCTCAGAAAGCCTGGGAC 764
|||| ||||| ||| |||| || ||||| |||| ||||||||||||||||| || ||||
Sbjct 521 CAGAAGCAACGCATGTGCTGCATAAGCAACTAATTGAAGCTATCTCAGAAAGTCTAGGAC 580
Query 765 TGGAGAAAAATTACTTACAAGAAGAGATAGAAGAAGGCTCACAAGTCATGGCAGTGAATT 824
||||||||||||||||||||||||| || ||||||| ||| ||||||||||| ||||| |
Sbjct 581 TGGAGAAAAATTACTTACAAGAAGAAATTGAAGAAGACTCGCAAGTCATGGCGGTGAACT 640
Query 825 GTTATCCAGCATG-CCCGGAACCTGAAATGGCCTTGGGAATGCCACCACACTCAGACTTC 883
| |||||||| || |||| |||| ||||| ||||||||||||||||||||||| |||||
Sbjct 641 GCTATCCAGCTTGTCCCG-AACCCGAAATTGCCTTGGGAATGCCACCACACTCGGACTTT 699
Query 884 AGCTCACTGACCATCTTACTTCAGAGTAGCAAGGGACTCCAGATAATGGACTGCAACAAA 943
||||||||||||||||||| ||||||||| |||| || ||||||||||||||||||||
Sbjct 700 GGCTCACTGACCATCTTACTCCAGAGTAGCCAGGGCCTGCAGATAATGGACTGCAACAAG 759
Query 944 AACTGGGTTTGTGTGCCGTATATAGAAGGAGCTTTGATAGTTCAGCTGGGAGATCAGGTA 1003
||||||||||||||||||||||| ||||||||| ||||||| ||| |||||||||| ||
Sbjct 760 AACTGGGTTTGTGTGCCGTATATTGAAGGAGCTCTGATAGTCCAGTTGGGAGATCAAATA 819
Query 1004 GAGGTGATGAGCAACGGCATATACAAGAGCGTCATTCATCGTGTAACAGTGAACAAAGAA 1063
|| || |||||||| |||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 820 GAAGTCATGAGCAATGGCATATACAAGAGTGTGGTTCATCGTGTAACAGTGAACAAA-AA 878
Query 1064 GT-CAAAAGGCTATCTTTTGCAAGTCTTCACAGTCTACCTCTGCACAAGAAAATAAGTCC 1122
| ||| |||| ||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 879 TTACAAGCGGCTCTCTTTTGCAAGTCTTCACAGTATGCCTCTGCACAAGAAAATAAGTCC 938
Query 1123 AGCACCAAAACTCGTCAACCCAAACAATGCACCAGCCTATGGAGAGTTTAGTTTCAACGA 1182
||||| | |||||||| ||| || || | ||||||||||| || || ||||||||
Sbjct 939 AGCACTTGAGCTCGTCAATGAAAATAAACCAGCTGCCTATGGAGAATTCAGCTTCAACGA 998
Query 1183 TTTTCT-GAACTACATCTCAAGCAACGATTTTATACAAGAAAGATTCATTGACACAATAA 1241
|||||| || ||| ||||| ||||| ||| ||| |||| ||||||||||||| ||| | |
Sbjct 999 TTTTCTTGA-CTATATCTCTAGCAATGATATTACACAACAAAGATTCATTGATACACTCA 1057
Query 1242 AGAA 1245
||||
Sbjct 1058 AGAA 1061
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47005556661
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5