BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G44810.1 Length=1145 Score E Sequences producing significant alignments: (Bits) Value Ahg322142 jgi|Araly1|322142|fgenesh1_pm.C_scaffold_4002199 1770 0.0 > Ahg322142 jgi|Araly1|322142|fgenesh1_pm.C_scaffold_4002199 Length=1347 Score = 1770 bits (958), Expect = 0.0 Identities = 1066/1119 (95%), Gaps = 3/1119 (0%) Strand=Plus/Plus Query 1 CCCACTGGTTCGAGTATCCCGGTTAAGCTTGGCCGGAGATGGATGGAGTATCAGGGGCTT 60 ||| ||||||||| || ||||||||||||||||||||||||||||||||| ||||||||| Sbjct 229 CCCTCTGGTTCGAATAACCCGGTTAAGCTTGGCCGGAGATGGATGGAGTACCAGGGGCTT 288 Query 61 CAAAATTGGGACGGTCTTTTAGACCCATTGGACGACAATCTCCGGCGAGAGATTCTCCGG 120 ||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 289 CAAAATTGGGATGGTCTTTTAGACCCATTGGACGAAAATCTCCGGCGTGAGATTCTCCGG 348 Query 121 TACGGTCAATTTGTCGAATCGGCTTATCAAGCATTTGATTTCGATCCTTCCTCTCCAACC 180 ||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 349 TACGGTCAATTCGTCGAATCGGCTTATCAAGCGTTTGATTTCGATCCTTCTTCTCCAACC 408 Query 181 TACGGGACATGCCGGTTTCCGAGGAGCACGTTGTTAGAGCGATCCGGTTTACCCAACTCC 240 |||| |||||||||||||||||||||||| |||||||| |||||||||||||| || ||| Sbjct 409 TACGCGACATGCCGGTTTCCGAGGAGCACTTTGTTAGACCGATCCGGTTTACCTAATTCC 468 Query 241 GGTTATCGACTAACGAAGAACCTTCGTGCCACGTCAGGTATTAACTTGCCACGTTGGATT 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 469 GGTTATCGACTAACGAAGAACCTTCGTGCCACGTCAGGTATTAACTTGCCACGTTGGATT 528 Query 301 GAGAAAGCGCCAAGCTGGATGGCTACACAATCTAGCTGGATTGGTTACGTGGCAGTTTGC 360 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 529 GAGAAAGCGCCAAGCTGGATGGCTACACAATCCAGCTGGATTGGTTACGTGGCAGTTTGC 588 Query 361 CAGGACAAAGAAGAGATCTCGCGGCTTGGGCGTAGAGACGTCGTCATCTCCTTCCGTGGA 420 || ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 589 CAAGACAAGGAAGAGATCTCACGGCTTGGGCGTAGAGACGTCGTCATCTCCTTCCGTGGA 648 Query 421 ACCGCCACGTGTCTCGAGTGGTTAGAGAACCTTCGCGCCACGCTGACTCATCTCCCTAAT 480 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 649 ACCGCCACGTGTCTCGAATGGTTAGAGAACCTTCGCGCCACGCTGACTCATCTCCCTAAT 708 Query 481 GGGCCTACTGGAGCAAATCTAAACGGGTCTAACTCTGGGCCCATGGTTGAGAGCGGGTTT 540 |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 709 GGGCCTACTGGACCAAATCTAAACGGGTCTAACTCTGGGCCCATGGTCGAGAGCGGGTTT 768 Query 541 TTAAGCTTGTATACTTCAGGTGTTCACAGTTTGAGAGACATGGTAAGAGAAGAGATCGCA 600 ||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||| || Sbjct 769 TTAAGCTTGTACACTTCAGGGGTTCACAGTTTGAGAGACATGGTCAGAGAAGAGATCTCA 828 Query 601 AGGCTACTCCAATCTTACGGCGACGAGCCGTTAAGTGTAACGATAACCGGTCACAGCCTC 660 |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| Sbjct 829 AGGCTACTCCAATCTTACGGCGACGAGCCGCTAAGTGTAACGATAACCGGCCACAGCCTC 888 Query 661 GGCGCTGCGATCGCGACACTAGCAGCTTACGATATCAAAACGACGTTTAAACGTGCGCCT 720 || |||||||||||||||||||| || || ||||||||||||||||||||||||||||| Sbjct 889 GGAGCTGCGATCGCGACACTAGCCGCGTATGATATCAAAACGACGTTTAAACGTGCGCCG 948 Query 721 ATGGTTACCGTAATATCTTTCGGAGGTCCACGTGTCGGAAACAGATGCTTTCGGAAACTC 780 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 949 ATGGTTACCGTAATATCTTTTGGAGGTCCACGTGTCGGAAACAGATGCTTTCGGAAACTC 1008 Query 781 CTTGAGAAGCAAGGCACGAAGGTTCTAAGAATCGTGAACTCCGACGACGTCATCACCAAA 840 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1009 CTTGAGAAGCAAGGCACGAAGGTTCTAAGAATCGTGAACTCCGACGACGTTATCACCAAA 1068 Query 841 GTTCCTGGAGTTGTTTTAGAAAACAGAGAGCAAGATAACGTTAAGATGAC-A-G-CGTCG 897 ||||||||||| ||||||||||||||||||||||| ||||| |||||| | | | | ||| Sbjct 1069 GTTCCTGGAGTCGTTTTAGAAAACAGAGAGCAAGAGAACGTGAAGATGTCGACGACTTCG 1128 Query 898 ATAATGCCGAGCTGGATACAGAGACGCGTGGAGGAGACGCCGTGGGTTTACGCTGAAATC 957 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 1129 ATAATGCCGAGCTGGATACAGAGACGCGTGGAGGAGACGCCGTGGGTTTACGCCGAGGTC 1188 Query 958 GGTAAGGAGCTTCGGCTGAGTAGCCGTGACTCGCCGCACTTGAGCAGCATCAATGTGGCC 1017 |||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||| Sbjct 1189 GGTAAGGAGCTTAGGCTGAGCAGCCGTGACTCGCCGCACTTGAACAGCATCAATGTGGCT 1248 Query 1018 ACGTGTCATGAGCTGAAAACGTATTTACATTTGGTAGACGGGTTTGTGAGCTCCACGTGT 1077 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1249 ACGTGTCACGAGCTGAAAACGTATTTACATTTGGTAGACGGGTTTGTGAGCTCCACGTGT 1308 Query 1078 CCATTCAGAGAAACAGCTCGGAGAGTTCTCCATAGATGA 1116 ||||||||||| || |||||||||||||||||||||||| Sbjct 1309 CCATTCAGAGAGACGGCTCGGAGAGTTCTCCATAGATGA 1347 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42697667040 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5