BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44810.1
Length=1145
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322142 jgi|Araly1|322142|fgenesh1_pm.C_scaffold_4002199 1770 0.0
> Ahg322142 jgi|Araly1|322142|fgenesh1_pm.C_scaffold_4002199
Length=1347
Score = 1770 bits (958), Expect = 0.0
Identities = 1066/1119 (95%), Gaps = 3/1119 (0%)
Strand=Plus/Plus
Query 1 CCCACTGGTTCGAGTATCCCGGTTAAGCTTGGCCGGAGATGGATGGAGTATCAGGGGCTT 60
||| ||||||||| || ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 229 CCCTCTGGTTCGAATAACCCGGTTAAGCTTGGCCGGAGATGGATGGAGTACCAGGGGCTT 288
Query 61 CAAAATTGGGACGGTCTTTTAGACCCATTGGACGACAATCTCCGGCGAGAGATTCTCCGG 120
||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 289 CAAAATTGGGATGGTCTTTTAGACCCATTGGACGAAAATCTCCGGCGTGAGATTCTCCGG 348
Query 121 TACGGTCAATTTGTCGAATCGGCTTATCAAGCATTTGATTTCGATCCTTCCTCTCCAACC 180
||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 349 TACGGTCAATTCGTCGAATCGGCTTATCAAGCGTTTGATTTCGATCCTTCTTCTCCAACC 408
Query 181 TACGGGACATGCCGGTTTCCGAGGAGCACGTTGTTAGAGCGATCCGGTTTACCCAACTCC 240
|||| |||||||||||||||||||||||| |||||||| |||||||||||||| || |||
Sbjct 409 TACGCGACATGCCGGTTTCCGAGGAGCACTTTGTTAGACCGATCCGGTTTACCTAATTCC 468
Query 241 GGTTATCGACTAACGAAGAACCTTCGTGCCACGTCAGGTATTAACTTGCCACGTTGGATT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 GGTTATCGACTAACGAAGAACCTTCGTGCCACGTCAGGTATTAACTTGCCACGTTGGATT 528
Query 301 GAGAAAGCGCCAAGCTGGATGGCTACACAATCTAGCTGGATTGGTTACGTGGCAGTTTGC 360
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 529 GAGAAAGCGCCAAGCTGGATGGCTACACAATCCAGCTGGATTGGTTACGTGGCAGTTTGC 588
Query 361 CAGGACAAAGAAGAGATCTCGCGGCTTGGGCGTAGAGACGTCGTCATCTCCTTCCGTGGA 420
|| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 589 CAAGACAAGGAAGAGATCTCACGGCTTGGGCGTAGAGACGTCGTCATCTCCTTCCGTGGA 648
Query 421 ACCGCCACGTGTCTCGAGTGGTTAGAGAACCTTCGCGCCACGCTGACTCATCTCCCTAAT 480
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 ACCGCCACGTGTCTCGAATGGTTAGAGAACCTTCGCGCCACGCTGACTCATCTCCCTAAT 708
Query 481 GGGCCTACTGGAGCAAATCTAAACGGGTCTAACTCTGGGCCCATGGTTGAGAGCGGGTTT 540
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 709 GGGCCTACTGGACCAAATCTAAACGGGTCTAACTCTGGGCCCATGGTCGAGAGCGGGTTT 768
Query 541 TTAAGCTTGTATACTTCAGGTGTTCACAGTTTGAGAGACATGGTAAGAGAAGAGATCGCA 600
||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||| ||
Sbjct 769 TTAAGCTTGTACACTTCAGGGGTTCACAGTTTGAGAGACATGGTCAGAGAAGAGATCTCA 828
Query 601 AGGCTACTCCAATCTTACGGCGACGAGCCGTTAAGTGTAACGATAACCGGTCACAGCCTC 660
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 829 AGGCTACTCCAATCTTACGGCGACGAGCCGCTAAGTGTAACGATAACCGGCCACAGCCTC 888
Query 661 GGCGCTGCGATCGCGACACTAGCAGCTTACGATATCAAAACGACGTTTAAACGTGCGCCT 720
|| |||||||||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct 889 GGAGCTGCGATCGCGACACTAGCCGCGTATGATATCAAAACGACGTTTAAACGTGCGCCG 948
Query 721 ATGGTTACCGTAATATCTTTCGGAGGTCCACGTGTCGGAAACAGATGCTTTCGGAAACTC 780
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 949 ATGGTTACCGTAATATCTTTTGGAGGTCCACGTGTCGGAAACAGATGCTTTCGGAAACTC 1008
Query 781 CTTGAGAAGCAAGGCACGAAGGTTCTAAGAATCGTGAACTCCGACGACGTCATCACCAAA 840
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1009 CTTGAGAAGCAAGGCACGAAGGTTCTAAGAATCGTGAACTCCGACGACGTTATCACCAAA 1068
Query 841 GTTCCTGGAGTTGTTTTAGAAAACAGAGAGCAAGATAACGTTAAGATGAC-A-G-CGTCG 897
||||||||||| ||||||||||||||||||||||| ||||| |||||| | | | | |||
Sbjct 1069 GTTCCTGGAGTCGTTTTAGAAAACAGAGAGCAAGAGAACGTGAAGATGTCGACGACTTCG 1128
Query 898 ATAATGCCGAGCTGGATACAGAGACGCGTGGAGGAGACGCCGTGGGTTTACGCTGAAATC 957
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1129 ATAATGCCGAGCTGGATACAGAGACGCGTGGAGGAGACGCCGTGGGTTTACGCCGAGGTC 1188
Query 958 GGTAAGGAGCTTCGGCTGAGTAGCCGTGACTCGCCGCACTTGAGCAGCATCAATGTGGCC 1017
|||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 1189 GGTAAGGAGCTTAGGCTGAGCAGCCGTGACTCGCCGCACTTGAACAGCATCAATGTGGCT 1248
Query 1018 ACGTGTCATGAGCTGAAAACGTATTTACATTTGGTAGACGGGTTTGTGAGCTCCACGTGT 1077
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1249 ACGTGTCACGAGCTGAAAACGTATTTACATTTGGTAGACGGGTTTGTGAGCTCCACGTGT 1308
Query 1078 CCATTCAGAGAAACAGCTCGGAGAGTTCTCCATAGATGA 1116
||||||||||| || ||||||||||||||||||||||||
Sbjct 1309 CCATTCAGAGAGACGGCTCGGAGAGTTCTCCATAGATGA 1347
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42697667040
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5