BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44820.2
Length=1032
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483610 jgi|Araly1|483610|fgenesh2_kg.4__2670__AT2G44820.2 1155 0.0
> Ahg483610 jgi|Araly1|483610|fgenesh2_kg.4__2670__AT2G44820.2
Length=947
Score = 1155 bits (625), Expect = 0.0
Identities = 853/960 (89%), Gaps = 28/960 (3%)
Strand=Plus/Plus
Query 1 CTCCGCCAGTGAAACCCTAAACTCCTCTT-TCCGATATTTCACTGTTCATCAATCGCTCT 59
|||||||| ||||||||||||| || ||| | |||| |||||||||||||||||| ||||
Sbjct 1 CTCCGCCATTGAAACCCTAAAC-CC-CTTAT-CGAT-TTTCACTGTTCATCAATCACTCT 56
Query 60 GCGTCACTCTTCCTAGCAAGCTCCTTTAATTTTCCTCTCA-ATCCAATCGTGATTTTGCA 118
||| |||||| |||| |||||| ||| ||||||||||| | | ||| |||||||||||||
Sbjct 57 GCGCCACTCTCCCTATCAAGCTTCTTCAATTTTCCTCTGAGA-CCAGTCGTGATTTTGCA 115
Query 119 TACCCATCAGGTTTCAGAAAAACT-GAAATAATG-GTGTATAAGCGCAAGTCAATGGAGA 176
| | || |||| || | | |||| | | ||||||| |||| | |||||||||
Sbjct 116 GA-TTGTTTTGTCTCAGGAAGATTCAAAATCA-GAATGTATAATCGCAGGCCAATGGAGA 173
Query 177 AGAAAAAGGAAGGCATGGGTTCTACTATTGATCAAAACCTGAGCTTTAAGAATATTATGA 236
||||||||||||||||||| | | ||||||| ||| |||| ||||||| ||| |||||||
Sbjct 174 AGAAAAAGGAAGGCATGGG-T-T-CTATTGACCAAGACCTCAGCTTTAGGAAGATTATGA 230
Query 237 AAGATGTTGCACTCTTTGGTTCTTCGCATATGACATGGAAGGATAAGAAAGCACTGGAGG 296
||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 231 AAGATGTTGAACTCTTTGGCTCTTCGCATATGACATGGAAGGATAAGAAAGCATTGGAGA 290
Query 297 ATAAGAAAGTGACTGCACTTGGTGGAAAGGCACAAAAGATGCATAGGCTACCGCTGAGTG 356
| ||||| ||||||||||| ||||||||| | |||||||||||||||||||| |||||||
Sbjct 291 ACAAGAAGGTGACTGCACTCGGTGGAAAGCCTCAAAAGATGCATAGGCTACCTCTGAGTG 350
Query 357 TAGCTCGAGTGCagatgaagaaacagaaagatagagaagagaagatgttagaacagaaTG 416
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 TAGCTAGAGTACAGATGAAGAAACAGAAAGATAGAGAAGAGAAGATGTTAGAACAGAATA 410
Query 417 TGATTCTTGGCAGATTTGGTGGGGGTGGAAGTAGCAGTAGGAAACCCGCAGAGAGAAAGC 476
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 411 TGATTCTTGGCAGATTTGGTGGGGGTGGAAGTAGTAGTAGGAAACCCGCAGAGAGGAAGC 470
Query 477 GTACGCCAGAAGAGAGAGTATTGAAGTCAACTGGAGGGATTTTCAAAGGCGGTGTTCTTG 536
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 471 GTACGCCAGAAGAGAGAGTCTTGAAGTCAACTGTAGGGATTTTCAAAGGCGGTGTTCTTG 530
Query 537 ATGTTAAGCATTTGCTACGTTCTGGTCCTTCAAGTAGTAGTGACAGAGATTTCAAGACGA 596
|||||| ||||||||||| |||||| ||||||||| || ||||||||||||||||| ||
Sbjct 531 ATGTTAGGCATTTGCTACACTCTGGTTCTTCAAGTACTAATGACAGAGATTTCAAGATGA 590
Query 597 AGAAACCCAGTAGGGTCGAGAAGAACTTGGGAGGAGGAGGTGATGGAGGAGGCATCAAGT 656
||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 AGAAACCTGGTAAGATCGAGAAGAACTTGGGAGGAGGAGGTGATGGAGGAGGCATCAAGT 650
Query 657 CTaagggaaaaaagaaaggaggcaaaaataagaataaaggaaagaagaa-a--ggaggtg 713
|||||||||| ||||||||||||||||| |||||||||||||||||||| | ||||| |
Sbjct 651 CTAAGGGAAAGAAGAAAGGAGGCAAAAAGAAGAATAAAGGAAAGAAGAAGAAAGGAGGCG 710
Query 714 gcaagaagagaggcaagTAATCGCG---G-TAGCTCTGTAACAAGTTTTGAAGC---G-T 765
| || |||| ||||||||||||||| | |||||||||||||| ||||||||| | |
Sbjct 711 GTAAAAAGAAAGGCAAGTAATCGCGTTAGCTAGCTCTGTAACAATTTTTGAAGCAAAGGT 770
Query 766 TTCAAGTATCATTGTATACTTCACAAGGATTACTCTTGGAATTCAACATTACAGTGAAAG 825
|||||| ||| |||||||||||||||||||| |||||||||| ||||||||||| ||||
Sbjct 771 TTCAAGCATCGCTGTATACTTCACAAGGATTAATCTTGGAATTGAACATTACAGTAAAAG 830
Query 826 AGCTATGAGTTTTGTTACAAACATGAAATGTTCTTTCGGCAGTATCCTCTCTTAGGACGA 885
|||| |||||||||| ||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 831 AGCT--GAGTTTTGTTTCAAACGTGAAATGTTCTTTAGGCAGTATCCTCTCTTAGGACGA 888
Query 886 GTCTGTTACAGGTATTGATCTTGTTATGATTGTTTTTATCTTCTTTAAGAGTATTGTAGA 945
||||||||||| ||||||||| |||||||||||||| |||||||||| |||| |||||||
Sbjct 889 GTCTGTTACAGCTATTGATCTGGTTATGATTGTTTT-ATCTTCTTTATGAGTTTTGTAGA 947
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38389777419
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5