BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44830.1
Length=2399
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483612 jgi|Araly1|483612|fgenesh2_kg.4__2672__AT2G44830.1 3895 0.0
Ahg485660 jgi|Araly1|485660|fgenesh2_kg.5__1652__AT3G52890.2 117 4e-25
> Ahg483612 jgi|Araly1|483612|fgenesh2_kg.4__2672__AT2G44830.1
Length=2374
Score = 3895 bits (2109), Expect = 0.0
Identities = 2273/2353 (97%), Gaps = 7/2353 (0%)
Strand=Plus/Plus
Query 31 GAGAGATTTGTGTTTGGTGTTAAAAATCGCATGAATGCTGGAAATGGAAAGAGTTGCTGA 90
|||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1 GAGAGATTTGGGTTTGGTGTTAAAGATTGCATGAATGCTGGAAATGGAAAGAGTTGCTGA 60
Query 91 GCTCAAGAGACTTCCTAGTAAAGGTCCTGTCTCTGGTCACTTATCAAGAAGACCATACTT 150
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 61 GCTCAAGAGACTTCCTAGTAAAGGTCCTGTCTCTGGTCACTTATCGAGAAGACCATACTT 120
Query 151 AGACTTTGAAACTAGAGATGCCCCGGGTATGCATTTGGAGAGTTTGAGGGAACGAGCTGC 210
|||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 121 AGACTTGGAAACTAGAGATGCCAATGGTATGCATTTGGAGACTTTGAGGGAACGAGCTGC 180
Query 211 TCGATACAACACGGGAAGATCTGTGAATCCAACTACGACATTGGGGAGAGAACTAAGCCA 270
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCGATACAACTCGGGAAGATCAGTGAATCCAACTACGACATTGGGGAGAGAACTAAGCCA 240
Query 271 AGTTCTGAATGTGCATAGGGAAGATATGATGATGACTCAGTTTGGTGGTAACATGAATGA 330
|||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||
Sbjct 241 AGTTCTGAATGTGCATAGAGAAGATATGATAATGACTCAATTTGGTGGTAACATGAATGA 300
Query 331 TTTTCAGGAGTTTGAGCCTGTTGTATCGTCTGTTAGAACGATGAAGGCCAAGTATCCTTT 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTTTCAGGAGTTTGAGCCTGTTGTATCGTCTGTTAGAACGATGAAGGCCAAGTATCCTTT 360
Query 391 GTTGGAGATTGAAGAAATTGGAGCTGCTGATGATGATGTTACTTGTAAGGGAAGCAATGA 450
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTTGGAGATTGAAGAAATTGGGGCTGCTGATGATGATGTTACTTGTAAGGGAAGCAATGA 420
Query 451 TATGTCTGAGGAAGCTGGTTCTAGCTCCTTCCGTGGAGTTAGTCATCCTCCAGAGCCTGA 510
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 421 TATGTCTGAGGAAGCTGGTTCTAGCTCCTTCCGTGGAGTTAGTCATCCTCCTGAGCCTGA 480
Query 511 CGATATGGATCTAATAACAACTGTTTATGTGCCCATCAGCGAGAAAAA-CAAACCTGATT 569
||| |||||||| ||||||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct 481 CGACATGGATCTGATAACAACTGTTTATGTGCCCATTAGCGA-AAAAAGCAAACCTGATT 539
Query 570 CGGTTTGCTTGATGAAGAGCATGTCTACTACTAAAGGACCCTTTATCGAGGATATTTCGC 629
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 540 CGGTTTGCTTGATGAAGAGCATGTCTACTACTAAAGGACCCTTTATCGAGGATATTTCCC 599
Query 630 TCTGTGTGCCTCCAAAGAAGCCAAGCCCGAGAGTACTTTCACCTGCAGAAAGCATAGTTG 689
|||| |||||||| |||||| |||||||| ||||||| ||||| ||||||||||||||||
Sbjct 600 TCTGCGTGCCTCCGAAGAAGTCAAGCCCGGGAGTACTCTCACCCGCAGAAAGCATAGTTG 659
Query 690 AGGAACCTGCTACATCGCTGTCCCCGTTCTCTGTGGCTCGTGCATCGCAGAACACTGAAA 749
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AGGAACCTGCTACGTCACTGTCCCCGTTCTCTGTGGCTCGTGCATCGCAGAACACTGAAA 719
Query 750 ACTCTCTGCTACCACCAGATTCAGACAAAGAATGTGTTTGGGATGCTTCTCTGCCTCCCA 809
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 720 ACTCTCTGCTACCGCCAGATTCAGACAAAGAATGTGTTTGGGATGCTTCTTTGCCTCCCA 779
Query 810 GTACCAATGTGAGCCCACATAGCAGTAGTGTTGAAAGTATGAATTTGGCTCGGGCTATGA 869
||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct 780 GTACCAATGTGAGCCCACATAGCAGTAGTGTTGAAAGTATGAACTTCGCCCGGGCTATGA 839
Query 870 GTATTGCTAATAGCTCTTCTGCAACAAGTACTACTCAGCGGAGCGATGTTGTGCTTAGTA 929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GTATTGCTAATAGCTCTTCTGCAACAAGTACTACTCAGCGGAGCGATGTTGTGCTTAGTA 899
Query 930 TGGACAAGAACTACTTTGACAGGAGTATCAGTATGGTTTTGGATTCGTTTGAAAGCACCA 989
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 900 TGGACAAGAACTACTGTGACAGGAGTATCAGTATGGTTTTAGATTCGTTTGAAAGCACCA 959
Query 990 AGACCAGTGCAAGCAGAGCAAGTGATAGTAGCGGCCTAAGCGAAGAGAGCAGCTGGAGCA 1049
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 960 AGACGAGTGCAAGCAGAGCAAGCGATAGTAGCGGCCTAAGCGAAGAGAGCAGCTGGAGCA 1019
Query 1050 ATTTCACGGGAAGCCTTAATAAGCCACACAAAGGGAATGATCCTTGGTGGAATGCTATCT 1109
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1020 ATTTCACGGGAAGCCTTAATAAGCCTCACAAAGGGAATGATCCTTGGTGGAATGCTATCT 1079
Query 1110 TGGCTATCCGAACCCGAGATGGGATTTTGGGAATGAGCCACTTCAAGTTGCTGAAACGAT 1169
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1080 TGGCTATCCGAACCCGAGATGGGATTTTGGGAATGAGCCACTTCAAGTTGCTGAAACGGT 1139
Query 1170 TAGGTTGTGGTGATATTGGGAGTGTCTATCTGGCTGAATTAAGCGGAACTCGATGCCATT 1229
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1140 TAGGTTGTGGTGATATTGGGAGTGTCTATCTGGCTGAATTGAGCGGAACTCGGTGCCATT 1199
Query 1230 TTGCTGTGAAAGTCATGGATAAAGCGTCTCTTGAGGACCGGAAGAAGTTGAATCGAGCTC 1289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 TTGCTGTGAAAGTCATGGATAAAGCGTCTCTTGAGGACCGGAAGAAGTTGAATCGAGCTC 1259
Query 1290 AGACCGAGAGGGATATTCTACAACTATTGGATCATCCGTTTCTACCGACATTGTACACTC 1349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 AGACCGAGAGGGATATTCTACAACTATTGGATCATCCGTTTCTACCGACATTGTACACTC 1319
Query 1350 ATTTTGAGACTGACAGATTCTCGTGTTTGGTCATGGAATACTGTCCTGGAGGTGATCTGC 1409
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 ATTTTGAGACAGACAGATTCTCGTGTTTGGTCATGGAATACTGTCCTGGAGGTGATCTGC 1379
Query 1410 ACACTCTAAGGCAACGTCAACCCGGGAAGCATTTCTCGGAGTACGCTGCTCGATTTTACG 1469
||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1380 ACACTTTAAGGCAACGTCAACCCGGGAAGCATTTCTCGGAGTACGCAGCTCGATTTTATG 1439
Query 1470 CTGCAGAGGTGTTGCTAGCACTAGAGTATCTCCACATGCTCGGTGTTGTTTACAGAGACT 1529
||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||
Sbjct 1440 CTGCAGAGGTGTTGCTAGCGCTCGAGTATCTCCACATGCTTGGTGTTGTTTACAGAGACT 1499
Query 1530 TGAAGCCTGAGAATGTTCTGGTTCGAGATGATGGTCACATAATGCTTTCAGACTTTGATC 1589
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1500 TGAAACCTGAGAATGTTCTGGTTCGAGATGACGGTCACATAATGCTTTCAGACTTCGATC 1559
Query 1590 TCTCCTTGAGGTGCGCGGTTTCGCCAACACTGATCAAAACATTCGACTCCGATCCATCTA 1649
||||| | || || |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1560 TCTCCCTAAGATGTGCGGTTTCTCCAACACTGATCAAAACATTCGACTCCGATCCATCTA 1619
Query 1650 GACGAGGCGCATTCTGCGTTCAACCTGCTTGTATGGAGCCTACATCAGCTTGCATCATTC 1709
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
Sbjct 1620 GACGAGGCGCATTCTGCGTTCAACCCGCTTGTATGGAGCCTACATCAGCTTGCATTATCC 1679
Query 1710 AACCCTCATGCTTCTTACCGCGCAGCATCTTCCCTAACaaaaacaaaaaaaaCAAGTCCC 1769
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 1680 AACCCTCATGCTTCTTACCGCGCAGCATCTTCCCTAACAAAAACAAAAAGAACAAGACCC 1739
Query 1770 GTAAAACCCAGGCGGATTTCTTCAAATCACACTCTGGTTCTCTCCCAGAGCTAGTAGCTG 1829
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1740 GTAAAACCCAGGCGGATTTCTTCAAATCACACGCTGGTTCTCTCCCAGAGCTAGTAGCTG 1799
Query 1830 AACCTAACACACGGTCCATGTCCTTTGTTGGAACCCACGAGTACTTAGCTCCAGAGATCA 1889
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1800 AACCTAACACACGGTCCATGTCCTTTGTCGGAACCCACGAGTACTTAGCTCCAGAGATCA 1859
Query 1890 TCAAAGGAGAAGGACATGGAAGCGCAGTGGATTGGTGGACTTTTGGTATCTTTGTGCATG 1949
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1860 TCAAAGGAGAAGGACACGGAAGCGCAGTGGATTGGTGGACTTTTGGTATCTTCGTGCACG 1919
Query 1950 AGCTCCTATATGGGAAAACCCCGTTTAAAGGATCAGGAAATCGAGCTACTCTGTTCAATG 2009
|||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1920 AGCTCCTATACGGGAAAACTCCGTTCAAAGGATCAGGAAATCGAGCTACTCTGTTCAATG 1979
Query 2010 TAGTCGGCGAACAGTTGAAATTCCCCGAGTCACCAGCAACTAGCTATGCAGGCAGGGACT 2069
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1980 TAGTCGGCGAACAGTTGAAATTCCCTGAGTCACCAGCAACTAGCTACGCAGGCAGGGACT 2039
Query 2070 TGATACAGGCTTTACTGGTGAAAGATCCAAAGAACAGGTTAGGGACAAAGAGAGGAGCAA 2129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2040 TGATACAGGCTTTACTGGTGAAAGATCCAAAGAACAGGTTAGGGACAAAGAGAGGAGCAA 2099
Query 2130 CGGAGATAAAGCAGCATCCATTCTTTGAAGGTGTGAATTGGGCATTGATAAGGTGTAGCA 2189
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2100 CAGAGATAAAGCAGCATCCGTTCTTTGAAGGTGTGAATTGGGCATTGATAAGGTGTAGCA 2159
Query 2190 CTCCACCTGAAGTACCGAGACAGATGGAGACCGAACCGCCACCAAAGTATGGACCGATTG 2249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2160 CTCCACCTGAAGTACCGAGACAGATGGAGACCGAACCGCCACCAAAGTATGGACCGATTG 2219
Query 2250 ATCCGGTTGGGTTTGGTAGTAATAGCAAAAGGATGATGGGACCACCAGCAGTATCAGCAG 2309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2220 ATCCGGTTGGGTTTGGTAGTAATAGCAAAAGGATGATGGGACCACCAGCAGTATCAGCAG 2279
Query 2310 CAGCAGCAGACACGAAATCTGGTGGTAAATTTCTAGACTTTGAGTTTTTCTAAAGCTTCC 2369
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2280 CAGCAG-A--CACGAAATCTGGTGGTAAATTTCTAGACTTTGAGTTTTTCTAAAGCTTCC 2336
Query 2370 AAGA-TTTG-GTT 2380
|||| |||| |||
Sbjct 2337 AAGAGTTTGTGTT 2349
> Ahg485660 jgi|Araly1|485660|fgenesh2_kg.5__1652__AT3G52890.2
Length=3179
Score = 117 bits (63), Expect = 4e-25
Identities = 307/416 (74%), Gaps = 51/416 (12%)
Strand=Plus/Plus
Query 1818 AGCTAGTAGCTGAACCTAA-C--A-CACGGTCC-ATGTCCTTTGTTGGAACCCACGAGTA 1872
|||| || |||||||| || | | || | ||| || |||||||| ||||| ||||||||
Sbjct 2570 AGCTCGTGGCTGAACC-AACCGAAGCAAGATCCAAT-TCCTTTGTGGGAACACACGAGTA 2627
Query 1873 CTTAGCTCCAGAGATCATCAAAGGAGAAGGACATGGAAGC-GCAGTGGATTGGTGGACTT 1931
| |||||||||||||||||||||||||||||||||| || || || || ||||||||||
Sbjct 2628 CCTAGCTCCAGAGATCATCAAAGGAGAAGGACATGGT-GCTGCGGTTGACTGGTGGACTT 2686
Query 1932 TTGGTAT-CT--TTGTGCATGAGCTCCTATATGGGAAAACCCCGTTT-AAAGGAT-CAGG 1986
| || | || || | | ||||| |||| |||||||| || ||| ||||| | ||
Sbjct 2687 TCGGGGTTCTCCTT-TAC--GAGCTTTTATACGGGAAAACACC-TTTCAAAGGTTACAAC 2742
Query 1987 AA--ATCGAGCTACTCTGTTCAATGTAGTCG--GC-GAACAGTTGAAATTCCCCGAGTCA 2041
|| | |||| ||| || |||||| || | || |||| | || || ||||| | |
Sbjct 2743 AATGA-CGAG--ACTTTGGCCAATGTTGT-GTTGCAGAACC-TC-AAGTTTCCCGA-T-A 2794
Query 2042 -CCAGCAACT-AGCTATGCAGGCAGG-GACTTGAT-ACAGG-CTTTACTGGTGAAAGATC 2096
|| || | |||| | |||||| |||||||| | ||| |||| |||| || || |
Sbjct 2795 GCCCGCTTGTGAGCT-TCCAGGCAAAAGACTTGATCAGAGGGCTTT--TGGTTAAGGAAC 2851
Query 2097 CAAAGAACAGGTTAGGGACAAAGAGAGGAGCAACGGAGAT-AAA-GCAGCATCCATTCTT 2154
|| |||||||| | ||| || ||| |||| | ||||| ||| | | ||||| |||||
Sbjct 2852 CAGAGAACAGGCTCGGGTCAGAGAAAGGATCTGTAGAGATCAAAAG-A-CATCCTTTCTT 2909
Query 2155 TGAAGG-TGTGAATTGGGCAT-TGATAAGGTGTAGCACT-CCACCTGAAG-TACCG 2206
|||||| | |||||||||| | |||| |||| ||| | || ||||| | |||||
Sbjct 2910 TGAAGGAT-TGAATTGGGC-TCTGATCCGGTGC-GCAATACCGCCTGA-GCTACCG 2961
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90388151385
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5