BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44840.1
Length=932
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935434 jgi|Araly1|935434|scaffold_403422.1 1059 0.0
Ahg493127 jgi|Araly1|493127|fgenesh2_kg.7__2560__AT4G17490.1 122 3e-27
Ahg494254 jgi|Araly1|494254|fgenesh2_kg.8__70__AT5G47220.1 119 4e-26
> Ahg935434 jgi|Araly1|935434|scaffold_403422.1
Length=763
Score = 1059 bits (573), Expect = 0.0
Identities = 666/707 (94%), Gaps = 21/707 (3%)
Strand=Plus/Plus
Query 103 AGCTCATCTGATTCCGTTAATAACGGCGTTAACTCACGGATGTACTTCCGTAACCCGAGT 162
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 51 AGCTCATCTGATTCCGTTAATAACGGCGTTAACTCACGGATGTTCTTCCGTAACCCGAGT 110
Query 163 TTCAGCAACGTTATCTTAAACGATAACTGGAGCGACTTGCCGTTAAGTGTCGACGATTCT 222
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 111 TTCAGCAACGTTATCTTAAACGATAACTGGAGTGATTTGCCGTTAAGTGTCGACGATTCT 170
Query 223 CAAGACATGGCTATTTACAACACTCTCCGTGATGCCGTTAGCTCCGGCTGGACACCCTCC 282
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 171 CAAGACATGGCTATTTACAACACTCTCCGTGACGCCGTTAGCTCCGGATGGACACCCTCC 230
Query 283 GTTCCTCCCGTTACCTCT-C--C----G--G----CG---GAGGA-AA-ATAAGCCTCCG 324
|||||||||||||||||| | | | | || ||||| || | ||||||||
Sbjct 231 GTTCCTCCCGTTACCTCTCCGGCGGAGGAAGTTTCCGTTCGAGGAGAAGAGAAGCCTCCA 290
Query 325 GCGACGAAGGCGAGTGGCTCACACGCGCCGAGGCAGAAGGGGATGCAGTACAGAGGAGTG 384
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 291 GCGAC---GGCGAGTGGCTCGCACGCGCCGAGGCAGAAGGGGATGCAGTACAGAGGAGTG 347
Query 385 AGGAGGAGGCCGTGGGGGAAATTCGCGGCGGAGATTAGGGATCCGAAGAAGAACGGAGCT 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 348 AGGAGGAGGCCGTGGGGGAAATTCGCGGCGGAGATTAGGGATCCGAAGAAGAACGGAGCT 407
Query 445 AGGGTTTGGCTCGGGACTTACGAGACGCCGGAGGACGCGGCGGTGGCGTACGACCGAGCG 504
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 408 AGGGTTTGGCTCGGGACTTACGAGACGCCGGAAGACGCGGCGGTGGCTTACGACCGAGCG 467
Query 505 GCGTTTCAGCTCAGAGGATCGAAAGCTAAGCTGAATTTTCCGCATTTGATTGGTTCTTGT 564
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 GCGTTTCAGCTTAGAGGATCGAAAGCTAAGCTGAATTTTCCGCATTTGATTGGTTCTTGT 527
Query 565 AAGTATGAGCCGGTTAGGATTAGGCCTCGCCGTCGCTCGCCGGAACCGTCAGTCTCCGAT 624
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 528 AAGTATGAGCCGGTTAGGATTAGGCCTCGCCGTCGTTCGCCGGAACCGTCAGTCTCCAAT 587
Query 625 CAGTTAACGTCGGAGCAGAAGAGGGAAAGCCACGTGGATGACGGCGAGTCTAGTTTGGTT 684
|||||||| |||||||| ||||| |||||||||||||||||||||||||||| |||||||
Sbjct 588 CAGTTAACATCGGAGCAAAAGAGAGAAAGCCACGTGGATGACGGCGAGTCTATTTTGGTT 647
Query 685 GTACCGGAGTTGGATTTCACGGTGGATCAGTTTTACTTCGATGGTAGTTTATTAATGGAC 744
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 GTACCGGAGTTGGATTTCACGGTGGATCAGTTTTACTTCGATGGTAGTTTATTAATGGAT 707
Query 745 CAATCAGAATGTTCTTATTCTGATAATCGGATATAATTAGTTTTAAG 791
|||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 708 CAATCAGAATGTTCTTATTCTGGTAATCGGACATAATTAGTTTTAAG 754
> Ahg493127 jgi|Araly1|493127|fgenesh2_kg.7__2560__AT4G17490.1
Length=940
Score = 122 bits (66), Expect = 3e-27
Identities = 157/199 (79%), Gaps = 14/199 (7%)
Strand=Plus/Plus
Query 357 GCAGAAG-G-GGATGCAGTACAGAGGAGTGAGGAGGAGGCCGTGGGGGAAATTCGCGGCG 414
||||||| | || ||| |||||||||||||| | |||||||||||||||||||||||||
Sbjct 412 GCAGAAGAGAAGAGGCATTACAGAGGAGTGAGAATGAGGCCGTGGGGGAAATTCGCGGCG 471
Query 415 GAGATTAGGGATCCGAAGAAGAACG-G-AGCTAGGGTTTGGCTCGGGAC-TTACGAGACG 471
|||||| | |||||||| | || | | |||| |||||||||||||| || ||||||
Sbjct 472 GAGATTCGAGATCCGAACC-GT-CGTGGAACTAGAGTTTGGCTCGGGACGTTT-GAGACG 528
Query 472 CCGGAG-GACGCGGCG-GTGGCGTACGACCGAGCGGCGTTTCAG-CTCAGAGGATCGAAA 528
|| | || ||||| | | | |||||| ||| |||||| || ||| ||||||| |||
Sbjct 529 GCG-ATCGAAGCGGCTAGAG-CTTACGACAAAGCAGCGTTT-AGACTCCGAGGATCAAAA 585
Query 529 GCTAAGCTGAATTTTCCGC 547
|| | |||||||| ||||
Sbjct 586 GCGATTCTGAATTTCCCGC 604
> Ahg494254 jgi|Araly1|494254|fgenesh2_kg.8__70__AT5G47220.1
Length=830
Score = 119 bits (64), Expect = 4e-26
Identities = 118/144 (82%), Gaps = 4/144 (3%)
Strand=Plus/Plus
Query 369 GCAGTACAGAGGAGTGAGGA-GGAGGCCGTGGGGGAAATTCGCGGCGGAGATTAGGGATC 427
||| ||||||||||||| || |||||||||||||||||||||||||||||| | ||||
Sbjct 308 GCATTACAGAGGAGTGA-GACAGAGGCCGTGGGGGAAATTCGCGGCGGAGATCCGTGATC 366
Query 428 CGAAGAAGAACGGAGCTAGGGTTTGGCTCGGGAC-TTACGAGACGCCGGAGGACGCGGCG 486
|| |||||| ||||||||||||||| | ||||| || |||||| |||| || |||||
Sbjct 367 CGGCGAAGAATGGAGCTAGGGTTTGGTTAGGGACGTTT-GAGACGGCGGAAGATGCGGCT 425
Query 487 GTGGCGTACGACCGAGCGGCGTTT 510
| || ||||| |||| || |||
Sbjct 426 TTAGCTTACGATAGAGCAGCTTTT 449
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34577485719
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5