BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G44850.1 Length=1203 Score E Sequences producing significant alignments: (Bits) Value Ahg902517 jgi|Araly1|902517|Al_scaffold_0004_3167 1293 0.0 Ahg487434 jgi|Araly1|487434|fgenesh2_kg.6__568__AT5G06260.1 231 7e-60 Ahg349983 jgi|Araly1|349983|fgenesh1_pg.C_scaffold_6000576 165 7e-40 > Ahg902517 jgi|Araly1|902517|Al_scaffold_0004_3167 Length=990 Score = 1293 bits (700), Expect = 0.0 Identities = 816/870 (94%), Gaps = 15/870 (2%) Strand=Plus/Plus Query 349 GTGCCTTCTGCAAATGCAATATTCTTTCATGGTGACAAAGTTCAAGACACTGGGAATCAT 408 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GTGCCTTCTGCAAATGCAATATTCTTTCATGGTGACAAAGTTCAAGACACTGGGAATCAT 180 Query 409 GTGATTGAGAGGCTCTATGATCTGCAGAAAGTAGCTGAAATCATTGTTTCTAAATTTGGC 468 |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| Sbjct 181 GTGATTGAGAGGCTATATGATTTGCAGAAAGTAGCTGAAATCATTGTTTCTAAATTTGGC 240 Query 469 AACTCTGTTAATGCTTGGGTTGTTGAAGCTTCTGTCTTTAATGGACCATTTGCTATCTAC 528 ||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||| Sbjct 241 AACTCTGTTAATGCTTGGGTTGTTGAAGCTTCTCTTTTTAGTGGACCATTTGCTATCTAC 300 Query 529 AAAGACTTTGTTCCATCAGTGAATCACATGGGAGCACCAAAATCTTATTCCCCAGTTGGC 588 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 301 AAAGACTTTGTTCCATCAGTGAATCACAAGGGAGCACCAAAATCTTATTCCCCAGTTGGC 360 Query 589 TTCCCAGCTTCTTCATCAATTGTCTCCCTCTTATCTAGTTGCCTCCA----T----G-AG 639 |||||||||||||||||| ||||||||||||||||||||||| |||| | | | Sbjct 361 TTCCCAGCTTCTTCATCAGTTGTCTCCCTCTTATCTAGTTGCTTCCAGGCGTCAAAGAAC 420 Query 640 GT-A--TTGAAGGAAGGCACTGATGTGTGTTTGATAGACCAGATTGCATCAGTTCATCAC 696 | | || |||||||||| || |||||||||||| ||||||||||||||||||||||| Sbjct 421 CTCATTTTAAAGGAAGGCAAAGAAGTGTGTTTGATAAACCAGATTGCATCAGTTCATCAC 480 Query 697 TGTCCCAAAACTATTGTGCTTGGATTTAGCAAGGGTGGAGTTGTGATGAACCAGCTCATG 756 ||||||| ||||||||| |||||||||||||| |||||||||||||| |||||||||||| Sbjct 481 TGTCCCAGAACTATTGTTCTTGGATTTAGCAAAGGTGGAGTTGTGATTAACCAGCTCATG 540 Query 757 AGTGAGATCAGTTCCTTGGATACCAACTTTGCGAAAACTTCATCTGCAATGGTAGAAGAA 816 |||||||||||||| |||||||| ||||||||| ||||| ||||||||| |||||||||| Sbjct 541 AGTGAGATCAGTTCATTGGATACAAACTTTGCGGAAACTACATCTGCAACGGTAGAAGAA 600 Query 817 TCTACCAGCCAGCATGAAAAGATTCAGATCATTCCAGCCTCCAAAGAAAGCTTCCTCAAC 876 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 CCTACGAGCCAGCATGAAAAGATTCAGATCATTCCAGCCTCCAAAGAAAGCTTCCTCAAC 660 Query 877 AGCATTTCTGAAGTTCATTATATAGATGTAGGACTGAACTCTTCTGGTGCCTACATTACT 936 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 661 AGCATTTCTGAAGTTCATTATATCGATGTAGGACTGAACTCTTCTGGTGCCTACATTACG 720 Query 937 GATCACAATGTCGTGCAGAGAATCTCCCAACGCCTTGCACGAGGTGCAGACTCG---CTA 993 |||||||||||||||||||||||||| |||||||| |||||| | |||||||| ||| Sbjct 721 GATCACAATGTCGTGCAGAGAATCTCTCAACGCCTCGCACGAAGAACAGACTCGCTACTA 780 Query 994 CGCATTGTCATTCATGGAACTCCTAGGCAGTGGTGTGATGAGCTGCGAGGCTGGATTCGC 1053 ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| Sbjct 781 CGCATTGTCATTCATGGAACTCCTAGGCAGTGGTGTGATGAGCAGCGTGGCTGGATTCGC 840 Query 1054 AAGGAAAAAGATGAGTTGGTTCGTTTGCTCAAAGCTGAAACTGAGAATTCCGGTGGGAAA 1113 |||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||| ||| Sbjct 841 AAGGAAAAAGATGACTTGGTTCGTTTGCTCGAAGCTGAAACTGAAAATTCCGGTGGTAAA 900 Query 1114 CTACAGGTCTGTGAAAGGTTCTATTTTTCTGATAGACTTGCTGATTTGCAAATGCACTTT 1173 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 901 CTACAGGTCTGTGAAAGGTTCTATTTTTCTGATAGACTTGCTGATTTGCAAATGCACTTT 960 Query 1174 GAGATAATTGATGCTATGGATGTCTCCTAA 1203 |||||||||||||||||||||||||||||| Sbjct 961 GAGATAATTGATGCTATGGATGTCTCCTAA 990 > Ahg487434 jgi|Araly1|487434|fgenesh2_kg.6__568__AT5G06260.1 Length=1412 Score = 231 bits (125), Expect = 7e-60 Identities = 149/160 (93%), Gaps = 4/160 (3%) Strand=Plus/Plus Query 71 ATGGG-AATTTGAA-T--TCGTCTTCTGTTGATCATCGCTTCACTTCTGCTTCCAGAGCT 126 ||||| |||| ||| | |||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGGAAATTCGAATTCGTCGTCTTCTGTTGATCATCGCTTCACTTCTGCTTCCAGAGCT 60 Query 127 TTTACTCAGAAGAAGCTCGATGATCTCAAATCTCTCTTTGTTTCCCTCGCTTCCAAGTCT 186 |||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| Sbjct 61 TTTACTCAGAAGAAGCTCGATGATCTCAAATCACTCTTCGTCTCCCTCGCTTCCAAGTCC 120 Query 187 CACAGCAATGACCAATACGTCTCGTACCCTGTTTTCCAGG 226 || ||||||||||||||||| ||||||||||||||||||| Sbjct 121 CAGAGCAATGACCAATACGTATCGTACCCTGTTTTCCAGG 160 > Ahg349983 jgi|Araly1|349983|fgenesh1_pg.C_scaffold_6000576 Length=1314 Score = 165 bits (89), Expect = 7e-40 Identities = 106/114 (93%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 76 AATTTGAATTCGTCTTCTGTTGATCATCGCTTCACTTCTGCTTCCAGAGCTTTTACTCAG 135 |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 7 AATTCGAATTCGTCTTCTGTTGATCATCACTTCACTTCTGCTTCCAGAGCTTTTACTCAG 66 Query 136 AAGAAGCTCGATGATCTCAAATCTCTCTT-TGTTTCCCTCGCTTCCAAGTCTCA 188 ||||||||||||||||||||||| ||||| | || || ||| |||||||||||| Sbjct 67 AAGAAGCTCGATGATCTCAAATCACTCTTCTCTTACC-TCGATTCCAAGTCTCA 119 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44908796226 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5