BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44850.1
Length=1203
Score E
Sequences producing significant alignments: (Bits) Value
Ahg902517 jgi|Araly1|902517|Al_scaffold_0004_3167 1293 0.0
Ahg487434 jgi|Araly1|487434|fgenesh2_kg.6__568__AT5G06260.1 231 7e-60
Ahg349983 jgi|Araly1|349983|fgenesh1_pg.C_scaffold_6000576 165 7e-40
> Ahg902517 jgi|Araly1|902517|Al_scaffold_0004_3167
Length=990
Score = 1293 bits (700), Expect = 0.0
Identities = 816/870 (94%), Gaps = 15/870 (2%)
Strand=Plus/Plus
Query 349 GTGCCTTCTGCAAATGCAATATTCTTTCATGGTGACAAAGTTCAAGACACTGGGAATCAT 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTGCCTTCTGCAAATGCAATATTCTTTCATGGTGACAAAGTTCAAGACACTGGGAATCAT 180
Query 409 GTGATTGAGAGGCTCTATGATCTGCAGAAAGTAGCTGAAATCATTGTTTCTAAATTTGGC 468
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTGATTGAGAGGCTATATGATTTGCAGAAAGTAGCTGAAATCATTGTTTCTAAATTTGGC 240
Query 469 AACTCTGTTAATGCTTGGGTTGTTGAAGCTTCTGTCTTTAATGGACCATTTGCTATCTAC 528
||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||
Sbjct 241 AACTCTGTTAATGCTTGGGTTGTTGAAGCTTCTCTTTTTAGTGGACCATTTGCTATCTAC 300
Query 529 AAAGACTTTGTTCCATCAGTGAATCACATGGGAGCACCAAAATCTTATTCCCCAGTTGGC 588
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 301 AAAGACTTTGTTCCATCAGTGAATCACAAGGGAGCACCAAAATCTTATTCCCCAGTTGGC 360
Query 589 TTCCCAGCTTCTTCATCAATTGTCTCCCTCTTATCTAGTTGCCTCCA----T----G-AG 639
|||||||||||||||||| ||||||||||||||||||||||| |||| | | |
Sbjct 361 TTCCCAGCTTCTTCATCAGTTGTCTCCCTCTTATCTAGTTGCTTCCAGGCGTCAAAGAAC 420
Query 640 GT-A--TTGAAGGAAGGCACTGATGTGTGTTTGATAGACCAGATTGCATCAGTTCATCAC 696
| | || |||||||||| || |||||||||||| |||||||||||||||||||||||
Sbjct 421 CTCATTTTAAAGGAAGGCAAAGAAGTGTGTTTGATAAACCAGATTGCATCAGTTCATCAC 480
Query 697 TGTCCCAAAACTATTGTGCTTGGATTTAGCAAGGGTGGAGTTGTGATGAACCAGCTCATG 756
||||||| ||||||||| |||||||||||||| |||||||||||||| ||||||||||||
Sbjct 481 TGTCCCAGAACTATTGTTCTTGGATTTAGCAAAGGTGGAGTTGTGATTAACCAGCTCATG 540
Query 757 AGTGAGATCAGTTCCTTGGATACCAACTTTGCGAAAACTTCATCTGCAATGGTAGAAGAA 816
|||||||||||||| |||||||| ||||||||| ||||| ||||||||| ||||||||||
Sbjct 541 AGTGAGATCAGTTCATTGGATACAAACTTTGCGGAAACTACATCTGCAACGGTAGAAGAA 600
Query 817 TCTACCAGCCAGCATGAAAAGATTCAGATCATTCCAGCCTCCAAAGAAAGCTTCCTCAAC 876
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CCTACGAGCCAGCATGAAAAGATTCAGATCATTCCAGCCTCCAAAGAAAGCTTCCTCAAC 660
Query 877 AGCATTTCTGAAGTTCATTATATAGATGTAGGACTGAACTCTTCTGGTGCCTACATTACT 936
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 661 AGCATTTCTGAAGTTCATTATATCGATGTAGGACTGAACTCTTCTGGTGCCTACATTACG 720
Query 937 GATCACAATGTCGTGCAGAGAATCTCCCAACGCCTTGCACGAGGTGCAGACTCG---CTA 993
|||||||||||||||||||||||||| |||||||| |||||| | |||||||| |||
Sbjct 721 GATCACAATGTCGTGCAGAGAATCTCTCAACGCCTCGCACGAAGAACAGACTCGCTACTA 780
Query 994 CGCATTGTCATTCATGGAACTCCTAGGCAGTGGTGTGATGAGCTGCGAGGCTGGATTCGC 1053
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 781 CGCATTGTCATTCATGGAACTCCTAGGCAGTGGTGTGATGAGCAGCGTGGCTGGATTCGC 840
Query 1054 AAGGAAAAAGATGAGTTGGTTCGTTTGCTCAAAGCTGAAACTGAGAATTCCGGTGGGAAA 1113
|||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||| |||
Sbjct 841 AAGGAAAAAGATGACTTGGTTCGTTTGCTCGAAGCTGAAACTGAAAATTCCGGTGGTAAA 900
Query 1114 CTACAGGTCTGTGAAAGGTTCTATTTTTCTGATAGACTTGCTGATTTGCAAATGCACTTT 1173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CTACAGGTCTGTGAAAGGTTCTATTTTTCTGATAGACTTGCTGATTTGCAAATGCACTTT 960
Query 1174 GAGATAATTGATGCTATGGATGTCTCCTAA 1203
||||||||||||||||||||||||||||||
Sbjct 961 GAGATAATTGATGCTATGGATGTCTCCTAA 990
> Ahg487434 jgi|Araly1|487434|fgenesh2_kg.6__568__AT5G06260.1
Length=1412
Score = 231 bits (125), Expect = 7e-60
Identities = 149/160 (93%), Gaps = 4/160 (3%)
Strand=Plus/Plus
Query 71 ATGGG-AATTTGAA-T--TCGTCTTCTGTTGATCATCGCTTCACTTCTGCTTCCAGAGCT 126
||||| |||| ||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGAAATTCGAATTCGTCGTCTTCTGTTGATCATCGCTTCACTTCTGCTTCCAGAGCT 60
Query 127 TTTACTCAGAAGAAGCTCGATGATCTCAAATCTCTCTTTGTTTCCCTCGCTTCCAAGTCT 186
|||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||
Sbjct 61 TTTACTCAGAAGAAGCTCGATGATCTCAAATCACTCTTCGTCTCCCTCGCTTCCAAGTCC 120
Query 187 CACAGCAATGACCAATACGTCTCGTACCCTGTTTTCCAGG 226
|| ||||||||||||||||| |||||||||||||||||||
Sbjct 121 CAGAGCAATGACCAATACGTATCGTACCCTGTTTTCCAGG 160
> Ahg349983 jgi|Araly1|349983|fgenesh1_pg.C_scaffold_6000576
Length=1314
Score = 165 bits (89), Expect = 7e-40
Identities = 106/114 (93%), Gaps = 2/114 (2%)
Strand=Plus/Plus
Query 76 AATTTGAATTCGTCTTCTGTTGATCATCGCTTCACTTCTGCTTCCAGAGCTTTTACTCAG 135
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 7 AATTCGAATTCGTCTTCTGTTGATCATCACTTCACTTCTGCTTCCAGAGCTTTTACTCAG 66
Query 136 AAGAAGCTCGATGATCTCAAATCTCTCTT-TGTTTCCCTCGCTTCCAAGTCTCA 188
||||||||||||||||||||||| ||||| | || || ||| ||||||||||||
Sbjct 67 AAGAAGCTCGATGATCTCAAATCACTCTTCTCTTACC-TCGATTCCAAGTCTCA 119
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44908796226
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5