BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44860.1
Length=857
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483616 jgi|Araly1|483616|fgenesh2_kg.4__2676__AT2G44860.1 1144 0.0
> Ahg483616 jgi|Araly1|483616|fgenesh2_kg.4__2676__AT2G44860.1
Length=840
Score = 1144 bits (619), Expect = 0.0
Identities = 775/848 (91%), Gaps = 20/848 (2%)
Strand=Plus/Plus
Query 22 TCTTCTTCTCTTTAGACCt-ttttttCTGCAGGGGGGCTCTAAAGCAAAACCCTTTT-CC 79
||||||||||||||||||| |||||||| | |||||||||||||| |||||||||| |
Sbjct 1 TCTTCTTCTCTTTAGACCTCTTTTTTCTTC--GGGGGCTCTAAAGCGAAACCCTTTTGCT 58
Query 80 TGAAATCGC-CGTCGCAAATTAGAAGAATCACCTACAGTCTTTTGTAGGGTTTT-CAAGA 137
||||||||| | |||||||||||||||||||||||||| ||| | |||||| |||||
Sbjct 59 TGAAATCGCTC-TCGCAAATTAGAAGAATCACCTACAG-GTTTACTTCGGTTTTCCAAGA 116
Query 138 CGAGGCAATATGAGATTGGAGAAGTGTTGGTTTTGCTCTTCCACAATATATCCTGGTCAT 197
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 117 CGGGGCAATATGAGATTGGTCAAGTGTTGGTTTTGCTCTTCCACAATATATCCTGGTCAC 176
Query 198 GGTATTCAATTTGTCCGTAACGATGCCAAGATATTCCGGTTCTGTAGGTCGAAGTGTCAC 257
|||||||| |||||||| |||||||||||||| |||||||||||||||||||| ||||||
Sbjct 177 GGTATTCAGTTTGTCCGCAACGATGCCAAGATTTTCCGGTTCTGTAGGTCGAAATGTCAC 236
Query 258 AAGAACTTCAAGATGAAGAGAAACCCACGTAAAGTGAAATGGACTAAAGCATTCAGAGCT 317
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 237 AAGAACTTCAAGATGAAGAGAAACCCGCGTAAAGTGAAATGGACTAAAGCATTCAGAGCG 296
Query 318 GCACACGGGAAGGACATGACTAAGGATACAACATTTGAGTTTGAGAAGAAGAGAAACAGA 377
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 297 GCACACGGGAAGGACATGACTAAGGATAAAACATTTGAGTTTGAGAAGAAGAGAAACAGA 356
Query 378 CCTGAGAGATACGACAGGAACGTTACAGAGAATACACTCATGGCCATTAAGAAGATTGCT 437
||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||| |
Sbjct 357 CCTGAGAGATACGACAGGAACGTAACAGAGAATACACTCAAGGCCATGAAGAAGATTGAT 416
Query 438 AAGATCAGAACCGCAAGGGAAGCCAAACATATCGAAAATAGGTTGAAGCCAAACAAGCAG 497
|||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 417 AAGATCAGAAGCGCAAGGGAAGCCAAACATATTGAAAATAGGTTGAAGCCAAACAAACAG 476
Query 498 AAGAAACTCAATGACGATATGAAAGAACTTGATCAGA-ACATTCATATGGTCCAGGCTCC 556
||||||||| |||||||| ||||||| ||||| | |||||||| | |||||||||||
Sbjct 477 AAGAAACTCCTTGACGATAAAAAAGAACACGATCA-ACACATTCATCTTGTCCAGGCTCC 535
Query 557 CGGGGCA----CAG--AAGATCAAAGTTGATGTTTCCGAAAAGAAGTCTGTTCAAAACGA 610
||| || ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 AGGGTCAGTTTCAGGGAAGATCAAAGTTGATGTTTCCGAAAAGAAGTCTGTTCAAAACGA 595
Query 611 AGCCATGGAAGAGTGATTCTGTGGTAACAATATGATCCGTCTAAAAGCCTCTCACTTACT 670
|| ||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||
Sbjct 596 AGACATGGAAGAGTGATTCTGTGGAAACATTATGATCCGTTTAAAAGCCTCTCACTTACT 655
Query 671 CTGATGCTGGTGTCATCTTAAAGAACAA-GTCTTCTTTAGTTTCTCTTACCATTTGTTTT 729
|||| |||||||||||||||||||| || | ||||||||||||||||| |||||||||||
Sbjct 656 CTGAAGCTGGTGTCATCTTAAAGAAAAAAGCCTTCTTTAGTTTCTCTTTCCATTTGTTTT 715
Query 730 TGGAAGTCTTTaaaaaaaaaaaaGTTTTGGTTTTTGTACTGATAAAACGGCTTTAAGTTG 789
|||| ||||||||||||||| |||||||||||||||||||||||| | |||||| |||
Sbjct 716 TGGAGGTCTTTAAAAAAAAA---GTTTTGGTTTTTGTACTGATAAAATGACTTTAAATTG 772
Query 790 CTATCATTTTGCAATGTATTATTATGTGTCTTTTATCATGCGAATGGTTAGGAGACATCC 849
|| |||||||||||||||||||||| |||||| |||||||| |||| |||||||||||||
Sbjct 773 CTTTCATTTTGCAATGTATTATTATATGTCTTATATCATGCAAATGTTTAGGAGACATCC 832
Query 850 ATAGCATC 857
||||||||
Sbjct 833 ATAGCATC 840
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31718266944
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5