BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44890.1
Length=1536
Score E
Sequences producing significant alignments: (Bits) Value
Ahg346360 jgi|Araly1|346360|fgenesh1_pg.C_scaffold_4002702 2061 0.0
Ahg483688 jgi|Araly1|483688|fgenesh2_kg.4__2748__AT2G44890.1 1491 0.0
> Ahg346360 jgi|Araly1|346360|fgenesh1_pg.C_scaffold_4002702
Length=1536
Score = 2061 bits (1116), Expect = 0.0
Identities = 1405/1545 (91%), Gaps = 18/1545 (1%)
Strand=Plus/Plus
Query 1 ATGGAGATTTTGACGAGCATGGCGATTATAGTAGTAACAACGATCTTCATCCTTCTGTCT 60
|||||||||||||||||||| || |||| | ||| |||||||||||||||| || |||||
Sbjct 1 ATGGAGATTTTGACGAGCATAGCTATTACAATAGCAACAACGATCTTCATCGTTTTGTCT 60
Query 61 TTC-GCACTCTATCTAACTATCAGAATCTTCACCGGAAAATCCAGAAACGACAAGAGGTA 119
||| || ||||||| || ||||||||||| ||||||||||| |||||||||||||| ||
Sbjct 61 TTCACCA-TCTATCTCACGATCAGAATCTTTACCGGAAAATCAAGAAACGACAAGAGATA 119
Query 120 TACTCCTGTACACGCCACAATCTTTGATCTTTTCTTCCACAGCCACAAATTATACGATTA 179
| |||| ||||| ||||| ||||||||||| |||||||||| || |||||||||||||
Sbjct 120 TGCTCCAGTACATGCCACGGTCTTTGATCTTCTCTTCCACAGGGACGAATTATACGATTA 179
Query 180 CGAGACAGAGATCGCGAGGACAAAGCCTACTT-TCAGGTTCTTGAGTCCAGGACAGAGCG 238
|||||||||||||||||| |||||||| |||| | |||||||| ||||||||||||||||
Sbjct 180 CGAGACAGAGATCGCGAGAACAAAGCCGACTTAT-AGGTTCTTAAGTCCAGGACAGAGCG 238
Query 239 AGATATTCACTGCAGATCCTCGGAACGTGGAGCATATTCTCAAGACAAGATTCCATAACT 298
||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 239 AGATATTAACTGCTGATCCTCGGAACGTGGAGCATATTCTCAAGACAAGATTCGATAACT 298
Query 299 ATAGTAAAGGACCCGTTGGTACAGTGAATCTTGCGGATCTTCTGGGACATGGGATCTTCG 358
||||||||||||| | ||||| || |||||| ||||||||| | |||||||||||||| |
Sbjct 299 ATAGTAAAGGACCTGCTGGTAGAGAGAATCTGGCGGATCTTTTAGGACATGGGATCTTTG 358
Query 359 CTGTTGATGGAGAGAAATGGAAACAACAAAGGAAGCTCGTGAGCTTTGAGTTCTCCACTA 418
||||||||||||||||||||| ||||||||||||||| | ||||||||||||||| ||||
Sbjct 359 CTGTTGATGGAGAGAAATGGAGACAACAAAGGAAGCTTGCGAGCTTTGAGTTCTCTACTA 418
Query 419 GAGTTTTAAGAAATTTTAGCTACTCTGTTTTTCGGACAAGTGCTTCTAAGCTTGTCGGTT 478
||||||||||| ||||||||| |||||||||| ||| || ||| ||||||||| | ||||
Sbjct 419 GAGTTTTAAGAGATTTTAGCTGCTCTGTTTTTAGGAGAAATGCATCTAAGCTTATTGGTT 478
Query 479 TTAT-TGCGGAGTTTGCTCTCTCTGGAAAATCTTTTGATTTTCAGGATATGTTGATGAAA 537
|| | | ||||||||||||||||||||||| |||||||| ||| ||||||||||||| |
Sbjct 479 TTGTCT-CGGAGTTTGCTCTCTCTGGAAAAGCTTTTGATGCTCAAGATATGTTGATGAGA 537
Query 538 TGTACATTGGACTCCATCTTTAAAGTTGGATTCGGTGTGGAGTTAGGATGTCTAGATGGG 597
||||||||||||||||||||||||||||| || |||||||||||| |||| | ||||||
Sbjct 538 TGTACATTGGACTCCATCTTTAAAGTTGGGTTTGGTGTGGAGTTAAAATGTTTGGATGGG 597
Query 598 TTTAGCAAAGAAGGGGAAGAGTTCATGAAGGCTTTTGATGAAGGCAACGGCGCAACTAGT 657
||||||||| ||||||||||||| ||| |||||||||||||||| |||| |||||||||
Sbjct 598 TTTAGCAAAAAAGGGGAAGAGTTTATGGAGGCTTTTGATGAAGGTAACGTTGCAACTAGT 657
Query 658 TCCAGGGT-CACCGACCCGTTTTGGAAGCTGAAATGTTTTCTTAACATTGGATCAGAGTC 716
|||| | | || ||| || |||||||||||||||| ||||| |||||||||||| | ||
Sbjct 658 TCCA-GATACATCGATCCACTTTGGAAGCTGAAATGGTTTCTCAACATTGGATCACAATC 716
Query 717 -AAGACTCAAGAAGAGCATTGCTATTATAGACAAGTTTGTCTATAGTCTCATTACCACTA 775
|| |||||||||||| ||||||| |||||| || ||||||||||||||||||||||| |
Sbjct 717 TAA-ACTCAAGAAGAGTATTGCTACTATAGATAAATTTGTCTATAGTCTCATTACCACAA 775
Query 776 AAAGGAAAGAGCTTTCCAAGGAACAGAACACT-TCTGTTAGAGAGGACATCCTATCGAAA 834
|||||||||||||| | ||||||||||||||| | ||||||||||||||| ||||||| |
Sbjct 776 AAAGGAAAGAGCTTGCTAAGGAACAGAACACTGT-TGTTAGAGAGGACATACTATCGAGA 834
Query 835 TTTCTTCTCGAGAGTGAGAAAGATCCGGAGAACATGAATGATAAGTACCTGAGGGATATC 894
||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 835 TTTCTAGTGGAGAGTGAGAAAGATCCGGAGAACATGAATGATAAGTACCTGAGAGATATA 894
Query 895 ATTTTGAA-TGTTATGGTTGCTGGTAAGGACACAACCGCTGCATCACTCTCTTGGTTCTT 953
||| |||| | ||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 895 ATTCTGAACT-TTATGATTGCTGGTAAGGACACAACCGCTGCATCACTTTCTTGGTTCTT 953
Query 954 GTACATGCTCTGCAAAAACCCACTTGTTCAGGAGAAAATCGTTCAAGAAATCAGAGATGT 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 GTACATGCTCTGCAAAAACCCACTTGTTCAGGAGAAAATCGTTCAAGAAATCAGAGATGT 1013
Query 1014 GACATCAAGTCACGAGAAAACAACCGATGTAAATGGTTTCATTGAAAGTGT-AACCGAAG 1072
||||||||||||||||||||||||||| ||||||||||||||||||||| | ||| ||||
Sbjct 1014 GACATCAAGTCACGAGAAAACAACCGACGTAAATGGTTTCATTGAAAGTATTAAC-GAAG 1072
Query 1073 AAGCTCTTGCTCAGATGCAGTATCTCCATGCGGCCTTGTCTGAGAC-TATGAGGCTTTAC 1131
| ||||||| ||||||||||||||||||||| |||||||||||||| | |||||||||||
Sbjct 1073 AGGCTCTTGATCAGATGCAGTATCTCCATGCAGCCTTGTCTGAGACCT-TGAGGCTTTAC 1131
Query 1132 CCACCTGTGCCTGAGCACATGAGGTGTGCAGAAAATGATGACGTTCTTCCAGATGGACAT 1191
|| |||||||||| | ||| ||| | |||||||||||||||| |||||||||||||||||
Sbjct 1132 CCTCCTGTGCCTGTGGACACGAGATATGCAGAAAATGATGACATTCTTCCAGATGGACAT 1191
Query 1192 AGAGTGAGCAAAGGGGATAATATCTACTACATATCCTATGCAATGGGTAGGATGACTTAC 1251
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1192 AGAGTGAGCAAAGGGGATAATATCTACTACATAGCCTATGCAATGGGTAGGATGACTTAC 1251
Query 1252 ATTTGGGGTCAAGATGCTGAGGAATTCAAGCCAGAGAGATGGCTCAAGGACGGCGTATTC 1311
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1252 ATTTGGGGACAAGATGCTGAGGAATTCAAGCCAGAGAGATGGCTTAAGGACGGCGTGTTC 1311
Query 1312 CAACCCGAATCACAATTCAAATTCATAAGCTTTCATGCTGGTCCAAGAATCTGTATTGGC 1371
||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 1312 CAACCCGAATCACCATTCAAATTTATAAGCTTTCATGCTGGTCCAAGAATCTGTCTTGGC 1371
Query 1372 AAGGATTTCGCATACCGGCAGATGAAGATAGTATCAATGGCACTTCTTCACTTCTTTCGC 1431
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 1372 AAGGATTTCGCATACCGGCAAATGAAGATAGTAGCAATGGCACTTCTTCACTTCTTTCGC 1431
Query 1432 TTCAAAATGGCTGATGAGAACAGCAAGGTGTCTTACAAGAAAATGCTTACACTTCATGTC 1491
|||||||||||||||||||| ||||| |||| |||||||| |||||||||||||||||||
Sbjct 1432 TTCAAAATGGCTGATGAGAAGAGCAATGTGTGTTACAAGACAATGCTTACACTTCATGTC 1491
Query 1492 GATGGAGGACTACATCTCTGTGCAATCCCGAGGACAAGCACTTGA 1536
|| |||||||| ||||| || ||||| ||||||||||||||||||
Sbjct 1492 GAAGGAGGACTCCATCTATGCGCAATTCCGAGGACAAGCACTTGA 1536
> Ahg483688 jgi|Araly1|483688|fgenesh2_kg.4__2748__AT2G44890.1
Length=1485
Score = 1491 bits (807), Expect = 0.0
Identities = 923/980 (94%), Gaps = 4/980 (0%)
Strand=Plus/Plus
Query 1 ATGGAGATTTTGACGAGCATGGCGATTATAGTAGTAACAACGATCTTCATCCTTCTGTCT 60
||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||
Sbjct 1 ATGGAGATTTTGACGAGCATGGCAATTATAGTTGTAACAACGATCTTCATCGTTCTGTCT 60
Query 61 TTCGCACTCTATCTAACTATCAGAATCTTCACCGGAAAATCCAGAAACGACAAGAGGTAT 120
|| ||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 TTTGCACTCTATCTCACGATCAGAATCTTCACCGGGAAATCCAGAAACGACAAGAGGTAT 120
Query 121 ACTCCTGTACACGCCACAATCTTTGATCTTTTCTTCCACAGCCACAAATTATACGATTAC 180
||||| ||||||||||||||||| |||||||||||||| ||| |||||||||||||||||
Sbjct 121 ACTCCAGTACACGCCACAATCTTCGATCTTTTCTTCCATAGCGACAAATTATACGATTAC 180
Query 181 GAGACAGAGATCGCGAGGACAAAGCCTACTTTCAGGTTCTTGAGTCCAGGACAGAGCGAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAGACAGAGATCGCGAGGACAAAGCCTACTTTCAGGTTCTTGAGTCCAGGACAGAGCGAG 240
Query 241 ATATTCACTGCAGATCCTCGGAACGTGGAGCATATTCTCAAGACAAGATTCCATAACTAT 300
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 241 ATATTGACTGCAGATCCTCGGAACGTGGAGCATATTCTCAAGACAAGATTCGATAACTAT 300
Query 301 AGTAAAGGACCCGTTGGTACAGTGAATCTTGCGGATCTTCTGGGACATGGGATCTTCGCT 360
||||||||||||||||||| || |||||||||||||||| |||||||||| ||||| |||
Sbjct 301 AGTAAAGGACCCGTTGGTAGAGAGAATCTTGCGGATCTTTTGGGACATGGAATCTTTGCT 360
Query 361 GTTGATGGAGAGAAATGGAAACAACAAAGGAAGCTCGTGAGCTTTGAGTTCTCCACTAGA 420
| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 361 GCTGATGGAGAGAAATGGAAACAACAAAGGAAGCTTGTGAGCTTTGAGTTCTCTACTAGA 420
Query 421 GTTTTAAGAAATTTTAGCTACTCTGTTTTTCGGACAAGTGCTTCTAAGCTTGTCGGTTTT 480
||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||
Sbjct 421 GTTTTAAGAAATTTTAGCTGCTCTGTTTTTCGGACAAGTGCTTCAAAGCTTGTTAGTTTT 480
Query 481 ATTGCGGAGTTTGCTCTCTCTGGAAAATCTTTTGATTTTCAGGATATGTTGATGAAATGT 540
|| ||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||
Sbjct 481 GTTTCGGAGTTTGCTCTCTCTGGAAAACCTTTTGATGCTCAGGATATGTTGATGAGATGT 540
Query 541 ACATTGGACTCCATCTTTAAAGTTGGATTCGGTGTGGAGTTAGGATGTCTAGATGGGTTT 600
||| | ||||| |||||||||||||| || |||||||| || |||||||||||||||||
Sbjct 541 ACAATAGACTCGATCTTTAAAGTTGGGTTTGGTGTGGAACTAAGATGTCTAGATGGGTTT 600
Query 601 AGCAAAGAAGGGGAAGAGTTCATGAAGGCTTTTGATGAAGGCAACGGCGCAACTAGTTCC 660
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 601 AGCAAAGAAGGGGAAGAGTTCATGAAGGCTTTTGATGAAGGCAACGTTGCAACTAGTTCC 660
Query 661 AGGGTCACCGACCCGTTTTGGAAGCTGAAATGTTTTCTTAACATTGGATCAGAGTCAAGA 720
||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 661 AGGTTCACCGATCCGCTTTGGAAGCTGAAATGTTTTCTTAACATTGGATCAGAGTCTAGA 720
Query 721 CTCAAGAAGAGCATTGCTATTATAGACAAGTTTGTCTATAGTCTCATTACCACTAAAAGG 780
||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CTCCAGAAGAGCGTTGCTACTATAGACAAGTTTGTCTATAGTCTCATTACCACTAAAAGG 780
Query 781 AAAGAGCTTTCCAAGGAACA-GAACACTTCTGTTAGAGAGGACATCCTATCGAAATTTCT 839
||||||||| |||||||||| || |||| |||||||||||||||||||||||||||||||
Sbjct 781 AAAGAGCTTGCCAAGGAACATGA-CACTGCTGTTAGAGAGGACATCCTATCGAAATTTCT 839
Query 840 TCTCGAGAGTGAGAAAGATCCGGAGAACATGAATGATAAGTACCTGAGGGATATCATTTT 899
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 840 TCTCGAGAGTGAGAAAGATCCGGAGAACATGAATGATAAGTACCTGAGAGATATCATTTT 899
Query 900 GAATGTT-ATGGTTGCTGGTAAGGACACAACCGCTGCATCACTCTCTTGGTTCTTGTACA 958
|||| || |||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 900 GAAT-TTCATGGTTGCTGGTAAGGACACAACCGCTGCATCTCTTTCTTGGTTCTTGTACA 958
Query 959 TGCTCTGCAAAAACCCACTT 978
||||||||||||||||||||
Sbjct 959 TGCTCTGCAAAAACCCACTT 978
Score = 800 bits (433), Expect = 0.0
Identities = 482/506 (95%), Gaps = 2/506 (0%)
Strand=Plus/Plus
Query 1032 AACAACCGATGTAAATGGTTTCATTGAAAGTGTAACCGAAGAAG-CTCTTGCTCAGATGC 1090
|||||| ||||||||||||||||||| |||||||||||||| || |||||||||||||||
Sbjct 981 AACAACTGATGTAAATGGTTTCATTGGAAGTGTAACCGAAG-AGACTCTTGCTCAGATGC 1039
Query 1091 AGTATCTCCATGCGGCCTTGTCTGAGACTATGAGGCTTTACCCACCTGTGCCTGAGCACA 1150
||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||
Sbjct 1040 AGTATCTCCATGCGGCCTTGTCTGAGACTCTGAGGCTTTACCCTCCTGTGCCTGAGGACA 1099
Query 1151 TGAGGTGTGCAGAAAATGATGACGTTCTTCCAGATGGACATAGAGTGAGCAAAGGGGATA 1210
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1100 TGAGGTGTGCAGGAAATGATGACGTTCTTCCAGATGGACATAGAGTGAGCAAAGGGGATA 1159
Query 1211 ATATCTACTACATATCCTATGCAATGGGTAGGATGACTTACATTTGGGGTCAAGATGCTG 1270
|| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1160 ATGTCTACTACATAGCCTATGCAATGGGTAGGATGACTTACATTTGGGGTCCAGATGCTG 1219
Query 1271 AGGAATTCAAGCCAGAGAGATGGCTCAAGGACGGCGTATTCCAACCCGAATCACAATTCA 1330
||||||||||||||||||||||||||||||||||||| |||||| |||||| || |||||
Sbjct 1220 AGGAATTCAAGCCAGAGAGATGGCTCAAGGACGGCGTGTTCCAAACCGAATTACCATTCA 1279
Query 1331 AATTCATAAGCTTTCATGCTGGTCCAAGAATCTGTATTGGCAAGGATTTCGCATACCGGC 1390
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1280 AATTCATAAGCTTTCATGCTGGTCCAAGAATCTGTCCAGGCAAGGATTTTGCATACCGGC 1339
Query 1391 AGATGAAGATAGTATCAATGGCACTTCTTCACTTCTTTCGCTTCAAAATGGCTGATGAGA 1450
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1340 AAATGAAGATAGTATCAATGGCACTTCTTCACTTCTTTCGCTTCAAAATGGCTGATGAGA 1399
Query 1451 ACAGCAAGGTGTCTTACAAGAAAATGCTTACACTTCATGTCGATGGAGGACTACATCTCT 1510
|||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1400 ACAGCAAGGTGTGTTACAAGAGGATGCTTACACTTCATGTCGATGGAGGACTCCATCTCT 1459
Query 1511 GTGCAATCCCGAGGACAAGCACTTGA 1536
||||||||||||||||||||||||||
Sbjct 1460 GTGCAATCCCGAGGACAAGCACTTGA 1485
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57516269950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5