BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44910.1
Length=957
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483619 jgi|Araly1|483619|fgenesh2_kg.4__2679__AT2G44910.1 1515 0.0
> Ahg483619 jgi|Araly1|483619|fgenesh2_kg.4__2679__AT2G44910.1
Length=948
Score = 1515 bits (820), Expect = 0.0
Identities = 914/958 (95%), Gaps = 11/958 (1%)
Strand=Plus/Plus
Query 1 ATGGGGGAAAGAGATGATGGGTTGGGTTTGAGTCTAAGCTTGGGAAATAGTCAACAAAAA 60
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGTGAAAGAGATGATGGGTTGGGTCTGAGTCTAAGCTTGGGAAATAGTCAACAAAAA 60
Query 61 GAACCATCTCTGAGGTTGAATCTTATGCCGTTGACAActtcttcttcttcttcttcGTTT 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 61 GAACCATCTCTGAGGTTGAATCTTATGCCGTTGACAA---CTTCTTCTTCTTCTTCGTTT 117
Query 121 CAACACATGCACAATCAGAATAACAATAGCCATCCCCAGAAGATTCATAACATCTCTTGG 180
||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||
Sbjct 118 CAACACATGCACAATCAGAATAATAATAGCCATCCCCAGAAGATTCATCACAACTCTTGG 177
Query 181 ACTCATCTGTTTCAATCTTCTGGGATTAAACGTACAACTGCAGAGAGAAACTCCGACGCC 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 178 ACTCATCTGTTTCAATCTTCTGGAATTAAACGTACAACTGCAGAGAGAAACTCTGACGCC 237
Query 241 GGGTCATTTCTAAGAGGTTTCAACGTGAACAGAGCTCAGTCTTCGGTGGCGGTAGTGGAC 300
||||| |||||||||||||||||||||| |||||||| |||| |||||||||| ||||||
Sbjct 238 GGGTCTTTTCTAAGAGGTTTCAACGTGAGCAGAGCTCCGTCTGCGGTGGCGGTGGTGGAC 297
Query 301 TTGGAAGAAGAAGCCGCCGTCGTCTCGTCTCCAAACAGCGCCGTTTCGAGTCTGAGTGGA 360
|||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||
Sbjct 298 TTGGAAGAAGAAGCCGCCGTCGTCTCGTCTCCGAACAGCACCGTCTCGAGTCTGAGTGGG 357
Query 361 AATAAAAGGGATCTTGCGGTGGCGAGAGGAGGAGATGAAAACGAGGCGGAGAGAGCTTCT 420
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 358 AATAAGAGGGATCTTGCGGTGGCAAGAGGAGGAGATGAAAACGAGGCGGAGAGAGCTTCT 417
Query 421 TGCTCACGCGGAGGGGGAAGCGGTGGTAGCGACGATGAAGACGGCGGAAACGGCGACGGA 480
|||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 418 TGCTCACGTGGAGGGGGAAGCGGTGGAAGTGACGATGAAGACGGCGGAAACGGCGACGGA 477
Query 481 TCAAGGAAGAAACTACGGTTATCGAAGGATCAAGCTCTTGTTCTCGAGGAGACTTTTAAA 540
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 478 TCAAGGAAGAAACTCCGGTTATCGAAGGAACAAGCTCTTGTTCTCGAGGAGACTTTTAAA 537
Query 541 GAACATAGCACTCTTAATCCGAAGCAAAAGCTGGCTCTAGCAAAACAGTTGAATCTAAGG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GAACATAGCACTCTTAATCCGAAGCAAAAGCTGGCTCTAGCAAAACAGTTGAATCTAAGG 597
Query 601 GCAAGACAAGTTGAAGTGTGGTTTCAGAACCGTAGGGCAAGGACGAAGCTGAAACAAACG 660
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 598 GCAAGACAAGTGGAAGTGTGGTTTCAGAACCGAAGGGCAAGGACGAAGCTGAAACAAACG 657
Query 661 GAGGTTGATTGTGAGTATTTAAAGAGATGTTGCGATAATCTGACCGAGGAGAATCGACGG 720
|||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||
Sbjct 658 GAGGTTGATTGTGAGTATTTGAAGAGATGTTGCGATAGTCTGACGGAGGAGAATCGACGG 717
Query 721 CTGCAGAAAGAAGTGTCGGAGCTGAGGGCGTTGAAGTTGTCTCCACATCTCTACATGCAC 780
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 718 TTGCAGAAAGAAGTGTCGGAGCTGAGAGCGTTGAAGTTGTCTCCACATCTCTACATGCAT 777
Query 781 ATGACTCCTCCTACTACTCTCACCATGTGCCCTTCTTGCGAACGTGTCTCCTCCTCTGCC 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 ATGACTCCTCCTACTACTCTCACCATGTGCCCTTCTTGCGAACGTGTCTCCTCCTCTGCC 837
Query 841 GCCACTGTGACCGCTGCTCCTTCCACTACTACTACTCCTACGGTGGTGGGGCGGCCAAGT 900
||||||||||| ||||||||| || ||||||| | | ||||||||||||||||||||||
Sbjct 838 GCCACTGTGACGGCTGCTCCT-CC--TACTACT-C-C-TACGGTGGTGGGGCGGCCAAGT 891
Query 901 CCACAGCGATTAACTCCTTGGACT-GCTATTTCTCTCCAGCAAAAATCAGGTCGCTAG 957
||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||
Sbjct 892 CCACAGCGATTAACTCCGTGGACTAG-TATTTCTCTCCAGCAAAAATCAGGTCGCTAG 948
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35530558644
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5