BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G44910.1 Length=957 Score E Sequences producing significant alignments: (Bits) Value Ahg483619 jgi|Araly1|483619|fgenesh2_kg.4__2679__AT2G44910.1 1515 0.0 > Ahg483619 jgi|Araly1|483619|fgenesh2_kg.4__2679__AT2G44910.1 Length=948 Score = 1515 bits (820), Expect = 0.0 Identities = 914/958 (95%), Gaps = 11/958 (1%) Strand=Plus/Plus Query 1 ATGGGGGAAAGAGATGATGGGTTGGGTTTGAGTCTAAGCTTGGGAAATAGTCAACAAAAA 60 ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1 ATGGGTGAAAGAGATGATGGGTTGGGTCTGAGTCTAAGCTTGGGAAATAGTCAACAAAAA 60 Query 61 GAACCATCTCTGAGGTTGAATCTTATGCCGTTGACAActtcttcttcttcttcttcGTTT 120 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 61 GAACCATCTCTGAGGTTGAATCTTATGCCGTTGACAA---CTTCTTCTTCTTCTTCGTTT 117 Query 121 CAACACATGCACAATCAGAATAACAATAGCCATCCCCAGAAGATTCATAACATCTCTTGG 180 ||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||| Sbjct 118 CAACACATGCACAATCAGAATAATAATAGCCATCCCCAGAAGATTCATCACAACTCTTGG 177 Query 181 ACTCATCTGTTTCAATCTTCTGGGATTAAACGTACAACTGCAGAGAGAAACTCCGACGCC 240 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 178 ACTCATCTGTTTCAATCTTCTGGAATTAAACGTACAACTGCAGAGAGAAACTCTGACGCC 237 Query 241 GGGTCATTTCTAAGAGGTTTCAACGTGAACAGAGCTCAGTCTTCGGTGGCGGTAGTGGAC 300 ||||| |||||||||||||||||||||| |||||||| |||| |||||||||| |||||| Sbjct 238 GGGTCTTTTCTAAGAGGTTTCAACGTGAGCAGAGCTCCGTCTGCGGTGGCGGTGGTGGAC 297 Query 301 TTGGAAGAAGAAGCCGCCGTCGTCTCGTCTCCAAACAGCGCCGTTTCGAGTCTGAGTGGA 360 |||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||| Sbjct 298 TTGGAAGAAGAAGCCGCCGTCGTCTCGTCTCCGAACAGCACCGTCTCGAGTCTGAGTGGG 357 Query 361 AATAAAAGGGATCTTGCGGTGGCGAGAGGAGGAGATGAAAACGAGGCGGAGAGAGCTTCT 420 ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 358 AATAAGAGGGATCTTGCGGTGGCAAGAGGAGGAGATGAAAACGAGGCGGAGAGAGCTTCT 417 Query 421 TGCTCACGCGGAGGGGGAAGCGGTGGTAGCGACGATGAAGACGGCGGAAACGGCGACGGA 480 |||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 418 TGCTCACGTGGAGGGGGAAGCGGTGGAAGTGACGATGAAGACGGCGGAAACGGCGACGGA 477 Query 481 TCAAGGAAGAAACTACGGTTATCGAAGGATCAAGCTCTTGTTCTCGAGGAGACTTTTAAA 540 |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 478 TCAAGGAAGAAACTCCGGTTATCGAAGGAACAAGCTCTTGTTCTCGAGGAGACTTTTAAA 537 Query 541 GAACATAGCACTCTTAATCCGAAGCAAAAGCTGGCTCTAGCAAAACAGTTGAATCTAAGG 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 538 GAACATAGCACTCTTAATCCGAAGCAAAAGCTGGCTCTAGCAAAACAGTTGAATCTAAGG 597 Query 601 GCAAGACAAGTTGAAGTGTGGTTTCAGAACCGTAGGGCAAGGACGAAGCTGAAACAAACG 660 ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 598 GCAAGACAAGTGGAAGTGTGGTTTCAGAACCGAAGGGCAAGGACGAAGCTGAAACAAACG 657 Query 661 GAGGTTGATTGTGAGTATTTAAAGAGATGTTGCGATAATCTGACCGAGGAGAATCGACGG 720 |||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||| Sbjct 658 GAGGTTGATTGTGAGTATTTGAAGAGATGTTGCGATAGTCTGACGGAGGAGAATCGACGG 717 Query 721 CTGCAGAAAGAAGTGTCGGAGCTGAGGGCGTTGAAGTTGTCTCCACATCTCTACATGCAC 780 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 718 TTGCAGAAAGAAGTGTCGGAGCTGAGAGCGTTGAAGTTGTCTCCACATCTCTACATGCAT 777 Query 781 ATGACTCCTCCTACTACTCTCACCATGTGCCCTTCTTGCGAACGTGTCTCCTCCTCTGCC 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 778 ATGACTCCTCCTACTACTCTCACCATGTGCCCTTCTTGCGAACGTGTCTCCTCCTCTGCC 837 Query 841 GCCACTGTGACCGCTGCTCCTTCCACTACTACTACTCCTACGGTGGTGGGGCGGCCAAGT 900 ||||||||||| ||||||||| || ||||||| | | |||||||||||||||||||||| Sbjct 838 GCCACTGTGACGGCTGCTCCT-CC--TACTACT-C-C-TACGGTGGTGGGGCGGCCAAGT 891 Query 901 CCACAGCGATTAACTCCTTGGACT-GCTATTTCTCTCCAGCAAAAATCAGGTCGCTAG 957 ||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||| Sbjct 892 CCACAGCGATTAACTCCGTGGACTAG-TATTTCTCTCCAGCAAAAATCAGGTCGCTAG 948 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35530558644 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5