BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G44930.1 Length=1806 Score E Sequences producing significant alignments: (Bits) Value Ahg483622 jgi|Araly1|483622|fgenesh2_kg.4__2682__AT2G44930.1 2468 0.0 Ahg320646 jgi|Araly1|320646|fgenesh1_pm.C_scaffold_4000703 1086 0.0 > Ahg483622 jgi|Araly1|483622|fgenesh2_kg.4__2682__AT2G44930.1 Length=1767 Score = 2468 bits (1336), Expect = 0.0 Identities = 1613/1740 (93%), Gaps = 45/1740 (3%) Strand=Plus/Plus Query 69 TATATCAGCATACATGGCCAAGGAGAAGCAACCGCTGATGGAGGATCTAGAACAAGGAAT 128 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 42 TATATCAGCATACATGGCCAAGGAGAAGGAACCGCTGATGGAGGATCTAGAACAAGGAAT 101 Query 129 ACAGCTAAGTACGAGGGAGAATGAAA-C--CGGATCTGGTAAAGTGGGTAGATGGAGCGA 185 |||||| | || || |||||||||| | ||| |||||||| ||||||||||||||||| Sbjct 102 ACAGCT-A--ACCAGTGAGAATGAAACCGGCGGGTCTGGTAACGTGGGTAGATGGAGCGA 158 Query 186 AGGATTTCGTGATCCATTGGTTTCTAAACACGGAACAGCTGAGAAAGCAAAGATTGTTTC 245 |||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||| Sbjct 159 AGGATTTCGTGATCCATTGGTTCCTAAACACGGAACAGCTGAGAAAGCAAAGGTTCTTTC 218 Query 246 TGTCACGACTAAACCGTATAAACCGGATT-CTTGCTATGAATCTGAGATTTCCGGTATAT 304 ||||| ||||||||||||||||||| || |||||| ||||||||||||||||||||||| Sbjct 219 GGTCACCACTAAACCGTATAAACCGG-TTCCTTGCTCTGAATCTGAGATTTCCGGTATAT 277 Query 305 GGCCTTCTTCGTTTAGCAAAGAGTATTGTTGCATCTATAGAGTACCTAACCGGTTAAGGA 364 |||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 278 GGCCTTCTTCATTTAGC---GAGTATTGTTGCATTTATAGAGTACCTAACCGGTTAAGGA 334 Query 365 GAGTTAATCCAGAGGCATACACTCCTCAGATGCTTCTCATCGGTCCACTTCAACATTCTA 424 |||| || ||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 335 GAGTGAACCCAGATGCATACACTCCTCAAATGCTTCTCATCGGTCCACTTCAACATTCTA 394 Query 425 AGAAAGCT-AATGCCCTTGAGCTTTCCAAAACCGATTTAAGATATTTGGACTATATGAAC 483 |||||||| || || |||||||| ||||||||||||| ||||||||||||||||||||| Sbjct 395 AGAAAGCTCAA-GCTCTTGAGCTCTCCAAAACCGATTCGAGATATTTGGACTATATGAAC 453 Query 484 ATGGAGCTTCACAAGAAGAAGTACCTTAATGCTATTGCAAATAAATATGGGGATCAAATT 543 ||||| ||||||||| |||||||||||||||||||||||||||||||||| || |||||| Sbjct 454 ATGGAACTTCACAAGGAGAAGTACCTTAATGCTATTGCAAATAAATATGGAGAACAAATT 513 Query 544 ATCGAAGTTTTCAAGG-AGATCAT-AGAAACAAGTGAGAAATTCGTTAGAGAAAGCTACG 601 |||||||||||| ||| | ||||| || ||||||||||||||| | ||||||||||||| Sbjct 514 ATCGAAGTTTTC-AGGAAAATCATAAG-AACAAGTGAGAAATTTATAAGAGAAAGCTACG 571 Query 602 CCGAGTCAACGGACTGGATCAAA-CCTCAAGATTTCGTTGATATGATCCTTCTCGACTCG 660 ||||||||||||| ||||||||| || ||||| ||||| || |||||||| ||||||||| Sbjct 572 CCGAGTCAACGGAGTGGATCAAATCC-CAAGAGTTCGTGGAAATGATCCTCCTCGACTCG 630 Query 661 GTGTTCATACTAGGGGTCTTTATTCAGGCTGAAACTACTCAAAACATCAAGAAGAAAGAA 720 ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 631 GTGTTCATACTAGGGTTCTTTATTCAGACTGAAACTACTCAAAACATCAAGAAGAAAGAA 690 Query 721 GAAATTCTTTTCCATGAAGAAGATATTATTTTCCAGGAGCCTTGTCTCATAACCACTATT 780 | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 691 GCAATTCTTTTCCATGAAGAAGATATTCTTTTCCAGGAGCCTTGTCTCATAACCACTATT 750 Query 781 TTAGAAGACCTAATCTTACTCGAGAACCAACTCCCTTATGTCCTTTTAGAGAAACTCTCT 840 ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct 751 TTAGAAGACCTAATCTTGCTCGAGAACCAACTCCCTTATGTCCTTTTAGAGGAACTCTCT 810 Query 841 AAACCTTTTTTCGCAAATCTTAAAACCAAGGAAACTTTCCGTGACATTATCCTTCGAGCT 900 | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 811 ATACATTTTTTCGCAAATCTTAAAACCAAGGAAACTTTCCGTGACATTATCCTTCGAGCT 870 Query 901 TTTAGGTTGAAAGGAGAGATCAAAGAAGGAACGAATTTCCGTCATTTTACAGATTTGTTC 960 || ||||| ||||||||| |||||||||||| ||||||||| |||||||||||||||||| Sbjct 871 TTCAGGTTAAAAGGAGAGGTCAAAGAAGGAATGAATTTCCGACATTTTACAGATTTGTTC 930 Query 961 AGACGTGTCCGTGTGGAAACACTTTGTTTGACAAAAGAACAAATCAAAAGCGCAAAGGAT 1020 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 931 CGACGTGTCCTTGTGGAAACACTTTGTTTGACAAAAGAACAAATCAAAAGCGCAAAGGAT 990 Query 1021 AAGCCACCGGAGATCATAAAGAGTCTGCACAACGCAGACAAACTAGACAGTGCTGGAGTG 1080 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 991 AAGCCACCGGAGAGCATAAAGAGTCTGCACAACGCAGACAAACTAGACAGTGCTGGAGTG 1050 Query 1081 GATTTTGTGCGTCTGGAAAG-AAAAAACGATTTATCGTTGGTGATAACTTTCGAACGCGG 1139 |||||||||| ||||| ||| ||||||| |||||||||||||||| ||||||||||| || Sbjct 1051 GATTTTGTGCCTCTGG-AAGAAAAAAACAATTTATCGTTGGTGATTACTTTCGAACGGGG 1109 Query 1140 AATCTTGGAAATACCTTGTTTCTTAGCGGACGACAACACCGAGAGGATTATGAGGAACTT 1199 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1110 AATCTTGGAAATACCTTGTTTCTTAGCGGACGACAACACCGAGAGGATTATGAGGAACTT 1169 Query 1200 AATGGCCCTCGAGCAATGTCATTACCCTCTCACTGCTTATGTTTGTAACTACATAGCTTT 1259 |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| || Sbjct 1170 AATGGCCCTCGAACAATGTCATTACCCTCTCACTTCTTATGTTTGTAACTACATAGCCTT 1229 Query 1260 CTTGGATTTTCTTATCGACACCGACCAAGACGTTGACTTGCTCGTCAAGAAAGGAGTTAT 1319 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1230 CTTGGATTTTCTCATCGACACCGACCAAGACGTTGACTTGCTCGTCAAGAAAGGAGTTAT 1289 Query 1320 AAAGAACTGGTTAGGACATCAAGCATCGGTGGCGGAAATGGTAAACAAGCTGTGTTTAGG 1379 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1290 AAAGAACTGGTTAGGACATCAAGCATCGGTGGCGGAAATGGTGAACAAGCTGTGTTTAGG 1349 Query 1380 GCTTGTGGATTTTGGATCTCACTATTACGGTATAGCCGATAGACTCAACAAACACTACGA 1439 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1350 GCTTGTGGATTTTGGATCTCACTATTACGATATAGCCGATAGACTCAACAAACACTACGA 1409 Query 1440 AAGCCGTCGCAATAGATCCATAGCCACACTCCGGCGAGTTTACTTTAAAGATCTTTGGAC 1499 |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 1410 GAGCCGTCGCAATAGATCCATCGCCACACTCCGGCGAGTTTACTTTAAAGACCTTTGGAC 1469 Query 1500 CGGAACTGCCACCATTGCCGCCGCCGTTATCCTCGTGTTGACTTTGATTGGGACGGTTGC 1559 ||||||||||||| ||||||||| |||||||||||||||||||||||||||||| || || Sbjct 1470 CGGAACTGCCACCGTTGCCGCCGTCGTTATCCTCGTGTTGACTTTGATTGGGACTGTGGC 1529 Query 1560 TTCCGTACTCCAGGTGACGCAGAAGGATAA-TAATTCTCCACCGCCTCCGGCTATGTTCC 1618 |||||| ||||| |||||||||||||| || ||||||||||||||||||| || ||||| Sbjct 1530 TTCCGTTCTCCAAGTGACGCAGAAGGAAAAATAATTCTCCACCGCCTCCGTCTCTGTTCT 1589 Query 1619 GAGGACCGTAGATTGTCTCTTGTTATATACGAAACAAA--CAATAGTTG-tt-tt-tttt 1673 ||||||| ||||||||||||||||||| |||||||||| ||||| ||| || || |||| Sbjct 1590 GAGGACCATAGATTGTCTCTTGTTATACACGAAACAAAAACAATATTTGCTTCTTCTTTT 1649 Query 1674 -----CTC-CA---A----T--GTTTAATTTGGTTTTCTCTTT-GCTCGACTTTGTTCCA 1717 ||| || | | |||||||||| |||||||||| ||||||||| |||| | Sbjct 1650 TTTTTCTCTCATGCAAAACTATGTTTAATTTGTTTTTCTCTTTAGCTCGACTTGGTTCAA 1709 Query 1718 CAAATAATGCTTCTTTTTCATATTTTCTTTATTTAGTCCATCATGGCTAACGTCATCTTT 1777 ||||||||| |||||||||||||| | || ||||| |||||||||||||||||||||||| Sbjct 1710 CAAATAATGTTTCTTTTTCATATTGT-TT-ATTTATTCCATCATGGCTAACGTCATCTTT 1767 > Ahg320646 jgi|Araly1|320646|fgenesh1_pm.C_scaffold_4000703 Length=1608 Score = 1086 bits (588), Expect = 0.0 Identities = 1119/1369 (82%), Gaps = 62/1369 (5%) Strand=Plus/Plus Query 286 TCTGAGATTTCCGGTATATGGCCTTCTTC-GTTTAGCAAAGAGTATTGTTGCATCTATAG 344 ||| |||| ||||| | ||| ||||||| ||| | | |||| ||||||||||||||| Sbjct 277 TCTAAGATACCCGGTCTTTGGTCTTCTTCGGTTAAAC-CCGAGTTTTGTTGCATCTATAG 335 Query 345 AGTACCTA-ACCGGTTAAGGAGAGTTAATCCAGAGGCATACACTCCTCAGATGCTTCTCA 403 |||||| | |||||||| | | ||| || || ||||| ||||||||||| ||||| || | Sbjct 336 AGTACC-AGACCGGTTACGCAAAGTGAACCCCGAGGCTTACACTCCTCAAATGCTGCTAA 394 Query 404 TCGGTCCACTTCAACATTCTAAGAAAGCT-AATGCCCTT-GAGCTTTCCAAAACCGATTT 461 |||| || ||||| ||||| ||||||| | || | |||| ||| | |||||||| || Sbjct 395 TCGGACCTCTTCACCATTCCAAGAAAGTTGAA-G-CCTTCAAGCGCTATAAAACCGAGTT 452 Query 462 AAGATATTTGGACTATATGAACATGGAGCTTCACAAGAAGAAGTACCTTAAT-GCTATTG 520 |||||||||| ||||| | ||||||||||||||||||||||||| |||| || | ||||| Sbjct 453 AAGATATTTGAACTATCTCAACATGGAGCTTCACAAGAAGAAGTGCCTTGATAG-TATTG 511 Query 521 CAAATAAATATGGGGATCAAATTATCGAAGTTTTCAAGGAGA-TCATAGAAACAAG-TGA 578 | ||| ||||||||| || | || ||| ||| |||||| |||| |||| || ||| Sbjct 512 GAGATATATATGGGGAACAGCCTGTCAAAGAGTTC-AGGAGACTCATTGAAA-GAGATGA 569 Query 579 GAAATTCGTTAGAGAAAGCTACGCCGAGTCAACGGA-CTGGATCAA-ACCTCAAGATTTC 636 ||||||| | ||||| ||||||||||||||||| || |||||||| | || |||||||| Sbjct 570 GAAATTCATAAGAGATAGCTACGCCGAGTCAAC-GATTTGGATCAATA-CTAAAGATTTC 627 Query 637 GTTGATATGATCCTTC-TCGACTCGGTGTTCATACTAGGGGTCTTTATTCAGGCTGAAAC 695 || || |||||||| | | |||||||||||||||||| | |||| ||||| | | || Sbjct 628 GTAGAAATGATCCTCCAT-GACTCGGTGTTCATACTAATGTTCTTCATTCAAACAGGAAG 686 Query 696 TACTCAAAACATCAAG-AAGAAAGAAGAAATTCTTTTCCATGAAGAAGATATTATTTTCC 754 ||||| |||| || || ||||||||||| |||||||| | || || | | | | | Sbjct 687 TACTCTAAACTTC-AGCAAGAAAGAAGATATTCTTTT-C---AACCAG--AGTCGTCT-C 738 Query 755 AGGAGCCTTGTCTCATAACCACTATTTTAGAAGACCTAATCTTACTCGAGAACCAACTCC 814 | | ||| | ||| | ||||||||||| |||||||| |||||||||||||| | Sbjct 739 ---A---TAAACTC-T-ACCGCCATTTTAGAAGATCTAATCTTGCTCGAGAACCAACTTC 790 Query 815 CTTATGTCCTTTTAGAGAAACTCTCTAAACCTTTTTTCGCAAATCTTAAAACCAAGGAAA 874 |||||| ||||||||||||||||| | ||||||||||| |||||||| | || ||||||| Sbjct 791 CTTATGCCCTTTTAGAGAAACTCTTTGAACCTTTTTTCTCAAATCTTGATACTAAGGAAA 850 Query 875 C-TTTCCGTGACATTATCCTTCGAGCTTTTAGG-TT-GAAAGGAGAGATCAAAGAAGGAA 931 | ||| |||||||||| ||||||||||||| || || | | ||| ||||||||||| ||| Sbjct 851 CGTTT-CGTGACATTACCCTTCGAGCTTTT-GGCTTCG-AGGGAAAGATCAAAGAA-GAA 906 Query 932 -CGA-ATTTCCGTCATTTTACAGATTTG-TTCAGACGTGTCCGTGTGGA-AACACTTTGT 987 || | |||| |||||||| |||||| ||| | |||||||||| | ||||||| | Sbjct 907 GTGAGA-TTCCAACATTTTACTGATTTGTTTC-GGTGTGTCCGTGT-CAGCACACTTTCT 963 Query 988 TTGACAAAAGAACAAATCAAAAGCGCAAAGGATAAGCCACCGGAGATCATAAAGAGTCTG 1047 ||| || |||||||||||| | |||||| || |||||||| ||| || ||||| | || Sbjct 964 TTGGCAGAAGAACAAATCAGTATAGCAAAGAATGAGCCACCGAAGAGCAGAAAGATTATG 1023 Query 1048 CACAACGCAGACAAACTAGACAGTGCTGGAGTGGATTTTGTGCGTCTGGAAAGAA-AAAA 1106 ||||||||||||||||||||||||| ||||||||||||||| | ||| | ||| |||| Sbjct 1024 TACAACGCAGACAAACTAGACAGTGCAGGAGTGGATTTTGTGAATGTGG-ATGAAGAAAA 1082 Query 1107 CGATTTATCGTTGGTGATAACTTTCGAACG-CGGAATCTTGGAAATACCTTGTTTCTTAG 1165 ||||||||||||||||| |||||| || | |||||||||| |||| ||||||||| || Sbjct 1083 TGATTTATCGTTGGTGATTACTTTC-AAAGACGGAATCTTGCAAATGCCTTGTTTCACAG 1141 Query 1166 CGGACGACAACACCGAGAGGATTATGAGGAACTTAATGGCCCTCGAGCAATGTCATTACC 1225 ||| ||||||||||||||| |||||||||| |||||||| ||||||||||||||||||| Sbjct 1142 TGGAAGACAACACCGAGAGGGTTATGAGGAATTTAATGGCACTCGAGCAATGTCATTACC 1201 Query 1226 CTCTCACTGCTTATGTTTGTAACTACATAGCTTTCTTGGATTTTCTTATCGACACCGACC 1285 ||| ||||||||||||||| ||||||| | ||||||||||| || ||| | ||||||| Sbjct 1202 CTCAAACTGCTTATGTTTGTGACTACATCTCCTTCTTGGATTTCCTCATCAATACCGACC 1261 Query 1286 AAGACGTTGACTTGCTCGTCAAGAAAGGAGTTATAAAGAACTGGTTAGGACATCAAGCAT 1345 ||||||||||||||||||||||||||||| || ||||| |||||||||||||||||| || Sbjct 1262 AAGACGTTGACTTGCTCGTCAAGAAAGGAATTGTAAAGGACTGGTTAGGACATCAAGGAT 1321 Query 1346 CGGTGGCGGAAATGGTAAACAAGCTGTGTTTAGGGCTTGTGGATTTTGGATCTCACTATT 1405 ||||| | |||||||| |||||||||||||||||||| |||||||| ||||||||||||| Sbjct 1322 CGGTGACAGAAATGGTGAACAAGCTGTGTTTAGGGCTCGTGGATTTCGGATCTCACTATT 1381 Query 1406 ACGGTATAGCCGATAGACTCAACAAACACTACGA-AAGCCGTCGCAATAGATCCATAGCC 1464 || ||||||||| || ||||||||||||||||| || | ||| ||| ||||| | ||| Sbjct 1382 GCGATATAGCCGAAAGCCTCAACAAACACTACGACAATC-GTCTCAACAGATCGGTCGCC 1440 Query 1465 ACACTCCGGCGAGTTTACTTT-AAAGATCTTTGGACCGGAACTGCCACCATTGCCGCCGC 1523 || |||||||||||||| ||| ||||||||||||||||| ||||||||| | ||||||| Sbjct 1441 ACTCTCCGGCGAGTTTA-TTTCAAAGATCTTTGGACCGGTACTGCCACCGTCGCCGCCGT 1499 Query 1524 CGTTATCCTCGTGTTGACTTTGATTGGGACGGTTGCTTCCGTACTCCAGGTGAC---GCA 1580 ||| |||||||||||||||||||| ||| || |||||| | ||||| || | ||| Sbjct 1500 TGTTCTCCTCGTGTTGACTTTGATTCAGACTGTAGCTTCCATTCTCCAAGTCATAATGCA 1559 Query 1581 GAAGGATAATAATTCTCCACCGCCTCCGGCTATGTTCCGAGGACCGTAG 1629 ||| || ||||| ||||| |||||||||||| || ||| |||| |||| Sbjct 1560 GAACGACAATAAGTCTCCGCCGCCTCCGGCTCCGTCCCGGGGACTGTAG 1608 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67800636100 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5