BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44930.1
Length=1806
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483622 jgi|Araly1|483622|fgenesh2_kg.4__2682__AT2G44930.1 2468 0.0
Ahg320646 jgi|Araly1|320646|fgenesh1_pm.C_scaffold_4000703 1086 0.0
> Ahg483622 jgi|Araly1|483622|fgenesh2_kg.4__2682__AT2G44930.1
Length=1767
Score = 2468 bits (1336), Expect = 0.0
Identities = 1613/1740 (93%), Gaps = 45/1740 (3%)
Strand=Plus/Plus
Query 69 TATATCAGCATACATGGCCAAGGAGAAGCAACCGCTGATGGAGGATCTAGAACAAGGAAT 128
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 42 TATATCAGCATACATGGCCAAGGAGAAGGAACCGCTGATGGAGGATCTAGAACAAGGAAT 101
Query 129 ACAGCTAAGTACGAGGGAGAATGAAA-C--CGGATCTGGTAAAGTGGGTAGATGGAGCGA 185
|||||| | || || |||||||||| | ||| |||||||| |||||||||||||||||
Sbjct 102 ACAGCT-A--ACCAGTGAGAATGAAACCGGCGGGTCTGGTAACGTGGGTAGATGGAGCGA 158
Query 186 AGGATTTCGTGATCCATTGGTTTCTAAACACGGAACAGCTGAGAAAGCAAAGATTGTTTC 245
|||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||
Sbjct 159 AGGATTTCGTGATCCATTGGTTCCTAAACACGGAACAGCTGAGAAAGCAAAGGTTCTTTC 218
Query 246 TGTCACGACTAAACCGTATAAACCGGATT-CTTGCTATGAATCTGAGATTTCCGGTATAT 304
||||| ||||||||||||||||||| || |||||| |||||||||||||||||||||||
Sbjct 219 GGTCACCACTAAACCGTATAAACCGG-TTCCTTGCTCTGAATCTGAGATTTCCGGTATAT 277
Query 305 GGCCTTCTTCGTTTAGCAAAGAGTATTGTTGCATCTATAGAGTACCTAACCGGTTAAGGA 364
|||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 278 GGCCTTCTTCATTTAGC---GAGTATTGTTGCATTTATAGAGTACCTAACCGGTTAAGGA 334
Query 365 GAGTTAATCCAGAGGCATACACTCCTCAGATGCTTCTCATCGGTCCACTTCAACATTCTA 424
|||| || ||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 335 GAGTGAACCCAGATGCATACACTCCTCAAATGCTTCTCATCGGTCCACTTCAACATTCTA 394
Query 425 AGAAAGCT-AATGCCCTTGAGCTTTCCAAAACCGATTTAAGATATTTGGACTATATGAAC 483
|||||||| || || |||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 395 AGAAAGCTCAA-GCTCTTGAGCTCTCCAAAACCGATTCGAGATATTTGGACTATATGAAC 453
Query 484 ATGGAGCTTCACAAGAAGAAGTACCTTAATGCTATTGCAAATAAATATGGGGATCAAATT 543
||||| ||||||||| |||||||||||||||||||||||||||||||||| || ||||||
Sbjct 454 ATGGAACTTCACAAGGAGAAGTACCTTAATGCTATTGCAAATAAATATGGAGAACAAATT 513
Query 544 ATCGAAGTTTTCAAGG-AGATCAT-AGAAACAAGTGAGAAATTCGTTAGAGAAAGCTACG 601
|||||||||||| ||| | ||||| || ||||||||||||||| | |||||||||||||
Sbjct 514 ATCGAAGTTTTC-AGGAAAATCATAAG-AACAAGTGAGAAATTTATAAGAGAAAGCTACG 571
Query 602 CCGAGTCAACGGACTGGATCAAA-CCTCAAGATTTCGTTGATATGATCCTTCTCGACTCG 660
||||||||||||| ||||||||| || ||||| ||||| || |||||||| |||||||||
Sbjct 572 CCGAGTCAACGGAGTGGATCAAATCC-CAAGAGTTCGTGGAAATGATCCTCCTCGACTCG 630
Query 661 GTGTTCATACTAGGGGTCTTTATTCAGGCTGAAACTACTCAAAACATCAAGAAGAAAGAA 720
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 631 GTGTTCATACTAGGGTTCTTTATTCAGACTGAAACTACTCAAAACATCAAGAAGAAAGAA 690
Query 721 GAAATTCTTTTCCATGAAGAAGATATTATTTTCCAGGAGCCTTGTCTCATAACCACTATT 780
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 691 GCAATTCTTTTCCATGAAGAAGATATTCTTTTCCAGGAGCCTTGTCTCATAACCACTATT 750
Query 781 TTAGAAGACCTAATCTTACTCGAGAACCAACTCCCTTATGTCCTTTTAGAGAAACTCTCT 840
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 751 TTAGAAGACCTAATCTTGCTCGAGAACCAACTCCCTTATGTCCTTTTAGAGGAACTCTCT 810
Query 841 AAACCTTTTTTCGCAAATCTTAAAACCAAGGAAACTTTCCGTGACATTATCCTTCGAGCT 900
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 811 ATACATTTTTTCGCAAATCTTAAAACCAAGGAAACTTTCCGTGACATTATCCTTCGAGCT 870
Query 901 TTTAGGTTGAAAGGAGAGATCAAAGAAGGAACGAATTTCCGTCATTTTACAGATTTGTTC 960
|| ||||| ||||||||| |||||||||||| ||||||||| ||||||||||||||||||
Sbjct 871 TTCAGGTTAAAAGGAGAGGTCAAAGAAGGAATGAATTTCCGACATTTTACAGATTTGTTC 930
Query 961 AGACGTGTCCGTGTGGAAACACTTTGTTTGACAAAAGAACAAATCAAAAGCGCAAAGGAT 1020
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 931 CGACGTGTCCTTGTGGAAACACTTTGTTTGACAAAAGAACAAATCAAAAGCGCAAAGGAT 990
Query 1021 AAGCCACCGGAGATCATAAAGAGTCTGCACAACGCAGACAAACTAGACAGTGCTGGAGTG 1080
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 991 AAGCCACCGGAGAGCATAAAGAGTCTGCACAACGCAGACAAACTAGACAGTGCTGGAGTG 1050
Query 1081 GATTTTGTGCGTCTGGAAAG-AAAAAACGATTTATCGTTGGTGATAACTTTCGAACGCGG 1139
|||||||||| ||||| ||| ||||||| |||||||||||||||| ||||||||||| ||
Sbjct 1051 GATTTTGTGCCTCTGG-AAGAAAAAAACAATTTATCGTTGGTGATTACTTTCGAACGGGG 1109
Query 1140 AATCTTGGAAATACCTTGTTTCTTAGCGGACGACAACACCGAGAGGATTATGAGGAACTT 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1110 AATCTTGGAAATACCTTGTTTCTTAGCGGACGACAACACCGAGAGGATTATGAGGAACTT 1169
Query 1200 AATGGCCCTCGAGCAATGTCATTACCCTCTCACTGCTTATGTTTGTAACTACATAGCTTT 1259
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 1170 AATGGCCCTCGAACAATGTCATTACCCTCTCACTTCTTATGTTTGTAACTACATAGCCTT 1229
Query 1260 CTTGGATTTTCTTATCGACACCGACCAAGACGTTGACTTGCTCGTCAAGAAAGGAGTTAT 1319
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1230 CTTGGATTTTCTCATCGACACCGACCAAGACGTTGACTTGCTCGTCAAGAAAGGAGTTAT 1289
Query 1320 AAAGAACTGGTTAGGACATCAAGCATCGGTGGCGGAAATGGTAAACAAGCTGTGTTTAGG 1379
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1290 AAAGAACTGGTTAGGACATCAAGCATCGGTGGCGGAAATGGTGAACAAGCTGTGTTTAGG 1349
Query 1380 GCTTGTGGATTTTGGATCTCACTATTACGGTATAGCCGATAGACTCAACAAACACTACGA 1439
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1350 GCTTGTGGATTTTGGATCTCACTATTACGATATAGCCGATAGACTCAACAAACACTACGA 1409
Query 1440 AAGCCGTCGCAATAGATCCATAGCCACACTCCGGCGAGTTTACTTTAAAGATCTTTGGAC 1499
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1410 GAGCCGTCGCAATAGATCCATCGCCACACTCCGGCGAGTTTACTTTAAAGACCTTTGGAC 1469
Query 1500 CGGAACTGCCACCATTGCCGCCGCCGTTATCCTCGTGTTGACTTTGATTGGGACGGTTGC 1559
||||||||||||| ||||||||| |||||||||||||||||||||||||||||| || ||
Sbjct 1470 CGGAACTGCCACCGTTGCCGCCGTCGTTATCCTCGTGTTGACTTTGATTGGGACTGTGGC 1529
Query 1560 TTCCGTACTCCAGGTGACGCAGAAGGATAA-TAATTCTCCACCGCCTCCGGCTATGTTCC 1618
|||||| ||||| |||||||||||||| || ||||||||||||||||||| || |||||
Sbjct 1530 TTCCGTTCTCCAAGTGACGCAGAAGGAAAAATAATTCTCCACCGCCTCCGTCTCTGTTCT 1589
Query 1619 GAGGACCGTAGATTGTCTCTTGTTATATACGAAACAAA--CAATAGTTG-tt-tt-tttt 1673
||||||| ||||||||||||||||||| |||||||||| ||||| ||| || || ||||
Sbjct 1590 GAGGACCATAGATTGTCTCTTGTTATACACGAAACAAAAACAATATTTGCTTCTTCTTTT 1649
Query 1674 -----CTC-CA---A----T--GTTTAATTTGGTTTTCTCTTT-GCTCGACTTTGTTCCA 1717
||| || | | |||||||||| |||||||||| ||||||||| |||| |
Sbjct 1650 TTTTTCTCTCATGCAAAACTATGTTTAATTTGTTTTTCTCTTTAGCTCGACTTGGTTCAA 1709
Query 1718 CAAATAATGCTTCTTTTTCATATTTTCTTTATTTAGTCCATCATGGCTAACGTCATCTTT 1777
||||||||| |||||||||||||| | || ||||| ||||||||||||||||||||||||
Sbjct 1710 CAAATAATGTTTCTTTTTCATATTGT-TT-ATTTATTCCATCATGGCTAACGTCATCTTT 1767
> Ahg320646 jgi|Araly1|320646|fgenesh1_pm.C_scaffold_4000703
Length=1608
Score = 1086 bits (588), Expect = 0.0
Identities = 1119/1369 (82%), Gaps = 62/1369 (5%)
Strand=Plus/Plus
Query 286 TCTGAGATTTCCGGTATATGGCCTTCTTC-GTTTAGCAAAGAGTATTGTTGCATCTATAG 344
||| |||| ||||| | ||| ||||||| ||| | | |||| |||||||||||||||
Sbjct 277 TCTAAGATACCCGGTCTTTGGTCTTCTTCGGTTAAAC-CCGAGTTTTGTTGCATCTATAG 335
Query 345 AGTACCTA-ACCGGTTAAGGAGAGTTAATCCAGAGGCATACACTCCTCAGATGCTTCTCA 403
|||||| | |||||||| | | ||| || || ||||| ||||||||||| ||||| || |
Sbjct 336 AGTACC-AGACCGGTTACGCAAAGTGAACCCCGAGGCTTACACTCCTCAAATGCTGCTAA 394
Query 404 TCGGTCCACTTCAACATTCTAAGAAAGCT-AATGCCCTT-GAGCTTTCCAAAACCGATTT 461
|||| || ||||| ||||| ||||||| | || | |||| ||| | |||||||| ||
Sbjct 395 TCGGACCTCTTCACCATTCCAAGAAAGTTGAA-G-CCTTCAAGCGCTATAAAACCGAGTT 452
Query 462 AAGATATTTGGACTATATGAACATGGAGCTTCACAAGAAGAAGTACCTTAAT-GCTATTG 520
|||||||||| ||||| | ||||||||||||||||||||||||| |||| || | |||||
Sbjct 453 AAGATATTTGAACTATCTCAACATGGAGCTTCACAAGAAGAAGTGCCTTGATAG-TATTG 511
Query 521 CAAATAAATATGGGGATCAAATTATCGAAGTTTTCAAGGAGA-TCATAGAAACAAG-TGA 578
| ||| ||||||||| || | || ||| ||| |||||| |||| |||| || |||
Sbjct 512 GAGATATATATGGGGAACAGCCTGTCAAAGAGTTC-AGGAGACTCATTGAAA-GAGATGA 569
Query 579 GAAATTCGTTAGAGAAAGCTACGCCGAGTCAACGGA-CTGGATCAA-ACCTCAAGATTTC 636
||||||| | ||||| ||||||||||||||||| || |||||||| | || ||||||||
Sbjct 570 GAAATTCATAAGAGATAGCTACGCCGAGTCAAC-GATTTGGATCAATA-CTAAAGATTTC 627
Query 637 GTTGATATGATCCTTC-TCGACTCGGTGTTCATACTAGGGGTCTTTATTCAGGCTGAAAC 695
|| || |||||||| | | |||||||||||||||||| | |||| ||||| | | ||
Sbjct 628 GTAGAAATGATCCTCCAT-GACTCGGTGTTCATACTAATGTTCTTCATTCAAACAGGAAG 686
Query 696 TACTCAAAACATCAAG-AAGAAAGAAGAAATTCTTTTCCATGAAGAAGATATTATTTTCC 754
||||| |||| || || ||||||||||| |||||||| | || || | | | | |
Sbjct 687 TACTCTAAACTTC-AGCAAGAAAGAAGATATTCTTTT-C---AACCAG--AGTCGTCT-C 738
Query 755 AGGAGCCTTGTCTCATAACCACTATTTTAGAAGACCTAATCTTACTCGAGAACCAACTCC 814
| | ||| | ||| | ||||||||||| |||||||| |||||||||||||| |
Sbjct 739 ---A---TAAACTC-T-ACCGCCATTTTAGAAGATCTAATCTTGCTCGAGAACCAACTTC 790
Query 815 CTTATGTCCTTTTAGAGAAACTCTCTAAACCTTTTTTCGCAAATCTTAAAACCAAGGAAA 874
|||||| ||||||||||||||||| | ||||||||||| |||||||| | || |||||||
Sbjct 791 CTTATGCCCTTTTAGAGAAACTCTTTGAACCTTTTTTCTCAAATCTTGATACTAAGGAAA 850
Query 875 C-TTTCCGTGACATTATCCTTCGAGCTTTTAGG-TT-GAAAGGAGAGATCAAAGAAGGAA 931
| ||| |||||||||| ||||||||||||| || || | | ||| ||||||||||| |||
Sbjct 851 CGTTT-CGTGACATTACCCTTCGAGCTTTT-GGCTTCG-AGGGAAAGATCAAAGAA-GAA 906
Query 932 -CGA-ATTTCCGTCATTTTACAGATTTG-TTCAGACGTGTCCGTGTGGA-AACACTTTGT 987
|| | |||| |||||||| |||||| ||| | |||||||||| | ||||||| |
Sbjct 907 GTGAGA-TTCCAACATTTTACTGATTTGTTTC-GGTGTGTCCGTGT-CAGCACACTTTCT 963
Query 988 TTGACAAAAGAACAAATCAAAAGCGCAAAGGATAAGCCACCGGAGATCATAAAGAGTCTG 1047
||| || |||||||||||| | |||||| || |||||||| ||| || ||||| | ||
Sbjct 964 TTGGCAGAAGAACAAATCAGTATAGCAAAGAATGAGCCACCGAAGAGCAGAAAGATTATG 1023
Query 1048 CACAACGCAGACAAACTAGACAGTGCTGGAGTGGATTTTGTGCGTCTGGAAAGAA-AAAA 1106
||||||||||||||||||||||||| ||||||||||||||| | ||| | ||| ||||
Sbjct 1024 TACAACGCAGACAAACTAGACAGTGCAGGAGTGGATTTTGTGAATGTGG-ATGAAGAAAA 1082
Query 1107 CGATTTATCGTTGGTGATAACTTTCGAACG-CGGAATCTTGGAAATACCTTGTTTCTTAG 1165
||||||||||||||||| |||||| || | |||||||||| |||| ||||||||| ||
Sbjct 1083 TGATTTATCGTTGGTGATTACTTTC-AAAGACGGAATCTTGCAAATGCCTTGTTTCACAG 1141
Query 1166 CGGACGACAACACCGAGAGGATTATGAGGAACTTAATGGCCCTCGAGCAATGTCATTACC 1225
||| ||||||||||||||| |||||||||| |||||||| |||||||||||||||||||
Sbjct 1142 TGGAAGACAACACCGAGAGGGTTATGAGGAATTTAATGGCACTCGAGCAATGTCATTACC 1201
Query 1226 CTCTCACTGCTTATGTTTGTAACTACATAGCTTTCTTGGATTTTCTTATCGACACCGACC 1285
||| ||||||||||||||| ||||||| | ||||||||||| || ||| | |||||||
Sbjct 1202 CTCAAACTGCTTATGTTTGTGACTACATCTCCTTCTTGGATTTCCTCATCAATACCGACC 1261
Query 1286 AAGACGTTGACTTGCTCGTCAAGAAAGGAGTTATAAAGAACTGGTTAGGACATCAAGCAT 1345
||||||||||||||||||||||||||||| || ||||| |||||||||||||||||| ||
Sbjct 1262 AAGACGTTGACTTGCTCGTCAAGAAAGGAATTGTAAAGGACTGGTTAGGACATCAAGGAT 1321
Query 1346 CGGTGGCGGAAATGGTAAACAAGCTGTGTTTAGGGCTTGTGGATTTTGGATCTCACTATT 1405
||||| | |||||||| |||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1322 CGGTGACAGAAATGGTGAACAAGCTGTGTTTAGGGCTCGTGGATTTCGGATCTCACTATT 1381
Query 1406 ACGGTATAGCCGATAGACTCAACAAACACTACGA-AAGCCGTCGCAATAGATCCATAGCC 1464
|| ||||||||| || ||||||||||||||||| || | ||| ||| ||||| | |||
Sbjct 1382 GCGATATAGCCGAAAGCCTCAACAAACACTACGACAATC-GTCTCAACAGATCGGTCGCC 1440
Query 1465 ACACTCCGGCGAGTTTACTTT-AAAGATCTTTGGACCGGAACTGCCACCATTGCCGCCGC 1523
|| |||||||||||||| ||| ||||||||||||||||| ||||||||| | |||||||
Sbjct 1441 ACTCTCCGGCGAGTTTA-TTTCAAAGATCTTTGGACCGGTACTGCCACCGTCGCCGCCGT 1499
Query 1524 CGTTATCCTCGTGTTGACTTTGATTGGGACGGTTGCTTCCGTACTCCAGGTGAC---GCA 1580
||| |||||||||||||||||||| ||| || |||||| | ||||| || | |||
Sbjct 1500 TGTTCTCCTCGTGTTGACTTTGATTCAGACTGTAGCTTCCATTCTCCAAGTCATAATGCA 1559
Query 1581 GAAGGATAATAATTCTCCACCGCCTCCGGCTATGTTCCGAGGACCGTAG 1629
||| || ||||| ||||| |||||||||||| || ||| |||| ||||
Sbjct 1560 GAACGACAATAAGTCTCCGCCGCCTCCGGCTCCGTCCCGGGGACTGTAG 1608
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67800636100
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5